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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014790 ID=TCONS_00014790|Name=TCONS_00014790|organism=Clytia hemisphaerica|type=transcript|length=5972bpRun BLAST on NCBI transcript from alignment at sc0000198:358429..383007+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014790 ID=TCONS_00014790|Name=TCONS_00014790|organism=Clytia hemisphaerica|type=transcript|length=24579bp|location=Sequence derived from alignment at sc0000198:358429..383007+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00014790 vs. Swiss-Prot (Human)
Match: ERCC6 (DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1 SV=1) HSP 1 Score: 761.525 bits (1965), Expect = 0.000e+0 Identity = 347/548 (63.32%), Postives = 441/548 (80.47%), Query Frame = 3
Query: 2853 ESENDEVTIQDDFTLPKKMWRKLYRYQRVGVKWLWQLHQQQVGGIIGDEMGLGKTIQMITFLHGLSNQMKRDRST----KGLGATLVVCPGTVLHQWVAEFHKWAPTFRVAILHDSGSFVGRKEALIKTINNHKGGILVTTYAGVRINKKELYRYKWHYVVLDEGHKIRNPDSEVTMAVKQIDTPHRIILTGTPMQNSLKELWSLFDFVFPGRLGTLPVFMAEFSVPITMGGYANATPVQVQTAHRCATVLKDTINPYMMRRLKKDVKMAINLPQKNEQVLFCKLTEAQKDMYEKYIKSPEVTNILQGRMKVFPGLIKLRKICNHPDLAFFEHXXXXXXXXXXITKSSDCGYWERSGKMLVVESLLKMWKEKKHRVLLFSQSKQMLDIMELFLKKFSYTYLRMDGETNIGSRQVVVKNFTQNTSIFVFLLTTRVGGLGLNLTAADRIIIFDPDWNPSTDTQARERAWRIGQDKHVTIYRLMTTGTIEEKIYHRQIFKQFLTNRVLANPFQRRFFKSNDLYELFSLDDIGPMQSTETGAIFAGTGSEIR 4484
+SE + + F +P +++KL++YQ+ GV+WLW+LH QQ GGI+GDEMGLGKTIQ+I FL GLS R R + +GLG T++VCP TV+HQWV EFH W P FRVAILH++GS+ +KE LI+ + H GIL+T+Y+ +R+ + ++ RY WHYV+LDEGHKIRNP++ VT+A KQ TPHRIIL+G+PMQN+L+ELWSLFDF+FPG+LGTLPVFM +FSVPITMGGY+NA+PVQV+TA++CA VL+DTINPY++RR+K DVKM+++LP KNEQVLFC+LT+ Q +Y+ ++ S EV IL G M++F GLI LRKICNHPDL F + D+ + GYW+RSGKM+VVESLLK+W ++ RVLLFSQS+QMLDI+E+FL+ YTYL+MDG T I SRQ ++ + ++TSIFVFLLTTRVGGLG+NLT A+R++I+DPDWNPSTDTQARERAWRIGQ K VT+YRL+T GTIEEKIYHRQIFKQFLTNRVL +P QRRFFKSNDLYELF+L QSTET AIFAGTGS+++
Sbjct: 485 DSEESDAEFDEGFKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKKEKLIRDVA-HCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGEMQIFSGLIALRKICNHPDL-FSGGPKNLKGLPDDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTLTSPDASQSTETSAIFAGTGSDVQ 1030 HSP 2 Score: 115.931 bits (289), Expect = 1.736e-25 Identity = 88/294 (29.93%), Postives = 144/294 (48.98%), Query Frame = 1
Query: 4768 VEIDGSKVEHVDKMESYKTKEEEIEQDEKTDTKVLSSSTSEDDVLMSLFRSS-GIHSALKHDKIEQSGNPDYVLVEKEAERVAKQAANALRQSRSQCRANGYSVPTWTG-RNSSTEPSSQPAKKRFGKRTNETNGDFSTAPKIKKEEPTTGYGDSQDLNLDSEAIDVXXXXXXXXXXXXNMVSTGGTPFLGMGGTPQSDE----DRLLKDXGTPSLGMGGTPQSDEDRLLKDIEMFV--KCKPDFTATSDQLTENFKERLKPGQNPLFKELLKQICSFKKVN-GDGFWKLKDEF 5622
+ +G+++ H+ K Y+ ++ E + + K +++D VL LF+ S G+HS +KHD I +PDYVLVE EA RVA+ A ALR SR +C VPTWTG R S P+ + K RFGK+ N +FS ++ T+ QD + E D R + S + + +RL + G P ++ D LL ++ F+ + D A++ ++ + F+ +L Q+ +F+ELL+ +C+F + + G+G WKLK E+
Sbjct: 1215 AKFEGTRIPHLVKKRRYQKQDSENKSEAK-------EQSNDDYVLEKLFKKSVGVHSVMKHDAIMDGASPDYVLVEAEANRVAQDALKALRLSRQRCLGAVSGVPTWTGHRGISGAPAGK--KSRFGKK---RNSNFS----VQHPSSTSPTEKCQDGIMKKEGKDNVPEHFSGRAEDADSSSGPLASSSLLAKMRARNHLILPERLESESGHLQEASALLPTTEHDDLLVEMRNFIAFQAHTDGQASTREILQEFESKLSASQSCVFRELLRNLCTFHRTSGGEGIWKLKPEY 1492 The following BLAST results are available for this feature:
BLAST of TCONS_00014790 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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