TCONS_00014807 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00014807
Unique Name	TCONS_00014807
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1046

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000198:205533..211012-

transcript sequence

>TCONS_00014807 ID=TCONS_00014807|Name=TCONS_00014807|organism=Clytia hemisphaerica|type=transcript|length=1046bp
aattaaattccctctaaaaaactttttcggccatccgccaaattaaattc
ccgccaaaatttcttcctttaaggtatgttGTTAACATTTggttgttttg
ataaaaaaagcttttcctTCCTAGGGTAAAAGTGTTGGTATCTTGGATGT
TGATGTATTTGGACCATCTATACCTAAAATGATGAACTTGTCAGGAGAAC
CAAGAGTAACTAAAGCATGTCAATGGGATTTTTGGTTGATGAGAATTCAC
CAATTGTCTGGAGAGGTCCAATGGTTATTTCAGCCATTCAGAAGCTTTTG
TTTCAAGTGCAATGGGGTCACTTAGATTACTTGTTCATCGATATGCCACC
AGGAACTGGTGATACTCAGCTCTCCATCTCACAGCTCATCCAAATCAATG
GAGCTGTCATCGTAACCACACCTCAAGATATAGCTTTGTTGGATGCGCGA
AGGGGCGCCGAAATGTTCAAAAAGGTTGATATTCCTATTTTGGGACTTGT
ACAGAACATGAGTCAATTTGTTTGTCCGAAATGTGAGCACGTGACACACG
TATTTGGGGATAATGGTGCAATGAAGTTGGTCAAAGATATGAATATCGAA
TTGCTCGGAGACGTGCCATTGCATTTGGAGATCCGAGAAACTTCCGATCA
AGGAATACCTGTTGTCGCAGCTAATCCTTCAAGTCCTcagAGTTTGGCTT
ACTGTAATATTGCTTCAAAGATTACAGAGAAATTGCCCACGTGAACGAAC
GAAGAAAGAAACGATGTAATGAGTGAACCTGTTTTCGTCGTGTATGAATA
CCAGAATGCAGGGGTGCAATTGGAAGCAGCTGTTCAACGGCTTGGATTGT
GCTGACCTTCATATATGCTGTAAACTTCCTTATGCGAAGATGTACGTAAC
CAACTTCGAGCTACATTTTTACCTCTATCCAGTAAATAGAGTTTACAGCT
CCTTCTGCAAGAATAATATTCCAATGAGAATATGTATTATGTATCTGATT
AGACTTTGTTATGTAACTGAAATATCGACAGATGAATGcagaaaaa

Run BLAST on NCBI

transcript from alignment at sc0000198:205533..211012-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00014807 ID=TCONS_00014807|Name=TCONS_00014807|organism=Clytia hemisphaerica|type=transcript|length=5480bp|location=Sequence derived from alignment at sc0000198:205533..211012- (Clytia hemisphaerica)
AATTAAATTCCCTCTAAAAAACTTTTTCGGCCATCCGCCAAATTAAATTC
CCGCCAAAATTTCTTCCTTTAAGGTATGTTGTTAACATTTGGTTGTTTTG
ATAAAAAAAGCTTTTCCTTCCTAGGGTAAAAGTGTTGGTATCTTGGATGT
TGATGTATTTGGACCATCTATACCTAAAATGATGAACTTGTCAGGAGAAC
CAAGAGTAACTAAAGGCAAGGTGTTTATGGAAACCTTAAATAGTCTTGAT
AATTATAGATTTTTATTATAAAACAGGAATACCTTTGAAATTCCTTGAAA
CCGTTTAAAATATCATTTTCATGTGTTTGGTTATCTTTTTCTAATTTGTG
TCGTTGTACTGTAATTTGAGTATTTGTATTATCTAGAATAATTTTGGGCA
TTTTGCTTGCAATCACCTACCTCGCCTACTCTCAATTGTCCCATTTGTTT
TACCATCATTTTCATAATTTTGGTTTTTGGAAAACTTTCAAAAAGACCCC
ATGAAAATGTGGAAAAAAGCTGTGTAGAGACATTGTTACTTCAAATGTAT
GATTTTGTTTACTATTTTAATGTATTTTTTTTGCAGAAAATCTTATGATC
CCCCAAGTCAACTATGGCATTAAATGGTTTGTATAGTAACACACTTGTTA
ATGTCAGAGTTAAATTTGACACAATACACAATCCTTTCTTTGTTAGAGCG
GAGAATCTCTTGCGACCAAGGAAATGTATGACCACAATTTTTTTTATCTT
TAACTTTCTTTTCGTTTCTGTAGCATGTCAATGGGATTTTTGGTTGATGA
GAATTCACCAATTGTCTGGAGAGGTCCAATGGTAAGAAAATATAAGAGAG
AAGATACTACAATCATGGTCGTAATATTTGAGAAAAAAGGGAAATTCACC
GGGAAGTTTTGAAACCACAATCGATTTGTAAGTGCTCTAAAGTAGGGTAG
AGTTTTAACTCTGAGTTTTAGCATAAGACTTAAGACTTTAAAAATGTTCA
AAAATGGTCCAGTAAGGCTCATAATATAGCCTGGAGGTCTATAAACCCGA
GCCAAATCGAAATATCCGATTAAATTTAAGAGATGCCTCACATTTTGAAA
AACGAGGAAATAAGCTTAATTCTCAATAGATTTCGACCATGATTGTAGTT
TAATCCAATAATAAGTTTGATCACTCACTTTATTTTCACCGTTGATAAAT
TCATAGTAGGGAAAATTAAATTTTGTTCACTTAAAAATCGTATACAAATA
TCAGAATTACAGTGGTTTGAATGTACATGGTATTATTGATAATTGGGAAG
AAAAGTGTAATTTTGAATAGGTTTGTGCTTCAAGGTCAATAAGGTTTAAA
AGATATTCAATGCAAATGGACACTTTTTTCTTTCACCAGGTTATTTCAGC
CATTCAGAAGCTTTTGTTTCAAGTGCAATGGGGTCACTTAGATTACTTGT
TCATCGATATGCCACCAGGAACTGGTGATACTCAGCTCTCCATCTCACAG
CTCATCCAAATCAATGGTATTGAATTTTAGATTTGAACCAAAGATTTCAG
AATTAAAAGTTTTATTTTTACAAGTGTTCACATTTCATATCAGACATATA
TTTCATATCAGGACAGTGTCTTCATATTATATTGTGCTGATATAAACAAA
AAATGTTTTTCTTTTCCTCTTTCTGATCAATCTTGCTCCTCATCGGTGTC
AATCCAATGTGAAAAAGCTTGTGAATTAAAATTGATGAGTAAGCAAACGA
CATTACTCTTATTTAAAAACAAAACCTTTAATTCAATCAACGACCGCATG
GATAGATATGTTGATTGATCACCTCATATGATCATTTTCGTCATCAGGAA
TAAGATATCATCGTCTTACTATACCTACTCTCGGGTACCTAATAGTCGGG
GGGGGGTTGGAATAAAAATGTCCTTGGTGGAAAACTTTCGAAAAGGAGGC
TAATACAGCAGAATTAGGGCAAAAGAGGGAACTTTCAAAAAAAATTTCCC
GAAAATCAATTAGCGGGGGGGGGGTTGGAATAAGAATGTCCTGGGTGGAA
AATTTTAGAAAAATTAACTAGCGGGCCCCCGGCTGGTACCAGGTACCCGA
GAGTATGCTTATAGGTGAAGAGAAGGGGGTTAACAAAATTTGGATCAAAA
TATGTATCATATTTAATATTGGGTGGTCCAAACCCCTGACTATGCTAGGT
ACGCAGGATAAGATTTTAACGACTTTATGTATTAGAGATAAATCGAAGGA
GACGGTATATAAAGCAAAGTTGCCTGTACCAGACGACCACAGCTTTTTCC
TCGACACTGTTCAACAGAGTGATAAAAAAATTGCTTGTTGGGATAGAGAT
AGGCTAAAAGCAAAAATGACATAGCGCTTAAGTCGCCCGCCACTTTGCTC
GACAGCGGTAAAAACACCAAAATACCGTCGTCTGTTTAGATGAGCAAAGG
CGTTATAGAGCCGTATAGAGCTATTGTTTTAGAGAAAAGGGATATTAATA
AATGCTTGTTTTGTAGGAGCTGTCATCGTAACCACACCTCAAGATATAGC
TTTGTTGGATGCGCGAAGGGGCGCCGAAATGTTCAAAAAGGTTGATATTC
CTGTAAGTTAGGCGATCTTTCATTTCAAAATCATAATTTTAATCATAAAC
CTTCTAACTTCTTGTAGGTGCCGAGGGCTTAAATTTGCCATTTTTTTTTC
ACTACTTCGTAAAGTAAAAGCTTTTTAGATAAATTGACGATAGCAAACGA
AAGCCCTTGACCCAATACGCATAAATATGTTATACTAGTAGGGTGGACAA
TGCAAACTTTTAAGTACATAATTGAACTAGAATACTTGGCAACCCCAGGG
CTGAAGCAAAAATTGGAGTTGCAAAAGAAATGTGTCCATGCTGAGCTTCT
AAGTAGACGGTTTACATAAGAAGGTGTTTAAACAAAAGCTTTCGACCCCA
TGTTTGATAAATATTTTACTCATGTGAGCTTAGATAAAGTATGGTTCAAA
ACACTTCTATAATCATTTTAGATTTTGGGACTTGTACAGAACATGAGTCA
ATTTGTTTGTCCGAAATGTGAGCACGTGACACACGTATTTGGGGATAATG
GTGCAATGAAGTTGGTCAAAGATATGAATATCGAATTGCTCGGTATGACT
TTTCATTTCTTTTTCTTCTTTTATGCTCTCCTTTCTAGTTCAAAGTGCTA
AAGTACATTATTCTATTGAATTCAATTTATTTTTCATACTTTAGGTGTAC
AAACTTTCGCAAGCAGGATCTTTTAGCTCTTTGTGCAAAAGTAAATGTCT
TTGCAAATTTTTGACATAGCCAATCGCGAAAATTTATGTTTGGGCTCTTC
CAAAAAAATTCGTTCATGGTGGGGGGGGGTGTAGAATATATTACTTTTCA
ATGGTCTACTCCTGGACATTTCGATTTTTCATACCCTTGACACACGTCTT
ACCCCTGGACACTAAAATTCACCCCTGGACATTACAAATTCACCCCATGG
ACACGGACATGGATTTTTTCGATACCCCTGGACATATTATTGTTCACGAA
CTTTTGATAAGTCAAGTCTCAATTTGACAAATTCTGATTTTTGCTTTCCA
TCTCAAGAAAACTGGCGATTGTTTAAGATCGAGAGCACCAGTTTCCCAAG
GACGTTTTCCGTAGATATTCTTATAAGTTTTATTACATGAAAATTGTCTG
TCCATAAAGTATATAATTGTATGTTTACACATTTTGTATATAAATAACTC
CAATTTAAAAAAAAATTGCCTTGACCACCTTCATATCATACCAAATTCTT
TGTTATCCCTTCCCATTGCATTGCATTGTCTTATATTTTGCTCGGTTTTT
CTTTAAAGGAGACGTGCCATTGCATTTGGAGATCCGAGAAACTTCCGATC
AAGGAATACCTGTTGTCGCAGCTAATCCTTCAAGTCCTCAGGTAAAATAT
AAAATGTATTTTTTCTGCAAAATTCAACTTATCGCAATCTAAATCTCTAA
GTATGTTTTCCAAACATAGTTTTGCCAATCGAAGTAACTTTAGACAAAGT
CAGTTGCTTGTGGTCATATTGCAGGCTCGGTGACCATTTTTCGAAATTGC
TGAATAAAGTTGTATTATCTCCTTCATTAATAAGCCTTTGTCCTATGATG
CTAATCAAAAATAGTGTGGCATTGTAAAAAATGCTCAAAATCAACTTTTT
GGAATAACTCTTCATATTTTTTGAGTCAACCATAGAGGTTTCACAGGGTA
ATAGACCTCAACATGGAGATATGATTAAGTGTAAGCCACACGATATTGAA
AAGTGATCTCTGAATGGGACCTTCTAGACTTGAAAGAAGAAAGGCTGAAT
TTTCCAAAAAGTGTTAAATTTACATACTTTTGCGTTGTTGTACTTTTTTG
TGCCTTTTTTTCAGCCACATATTTTACTCACACTTCATGCTTTAATATAT
TTAAGTTGAGTAAGCCACAAAATTTTGTTCTTTTTGCAAAAGGTAGATAA
ATTATTCAGCTTAACACCATGGATGTATTTTGACATTTAAGCCACATGAT
GGCCTCATTCTATGAGCAAAATAGTGGATGACATCAAAAATGTCACAAAA
CAGGGGTTAATTTTTTATTAGCATCCTATGTCTCAGAAACATGAAAAAAA
GAATGTCCCTCCTAAAAACTAAGAATTTGAATAATAATTGGGGATAATCA
CCGAAAATATACGGTATTTGATATTCTATAGCTATAGCCTATAGCTTTTC
GGTATCTCTTTCGTATTATATGAGGCCCGCAGTCACATTTCAAATCACGT
TATCACGAGTTAAATTTCCTTTCTATCACGATCACGTTAATAACGTTGGT
TCCTCCTCTCACGCAATCGCGCACTTTGAAATCACGAAATCACGCCATCA
CGAAAACTGCTGGGGGCCTCTTATATTACCTTATCATTCAACTTTTTCTC
AGACCTTCCTATTTTATAAATAAATTCTTTTTTTTGTAACTCAGAGTTTG
GCTTACTGTAATATTGCTTCAAAGATTACAGAGAAATTGCCCACGTGAAC
GAACGAAGAAAGGTACGAGATTTTATAGTTTTGATATTAAAATTTCTACA
TGCTAATCTGACACGCGGGCTTTTTTTTCTCACCGCCACTTTTCAAAAAC
ATTGATATCAAAAAGTGAAATGACATTTCTAATTACGTTTAGAAACGATG
TAATGAGTGAACCTGTTTTCGTCGTGTATGAATACCAGAATGCAGGGGTG
CAATTGGAAGCAGCTGTTCAACGGCTTGGATTGTGCTGACCTTCATATAT
GCTGTAAACTTCCTTATGCGAAGATGTACGTAACCAACTTCGAGCTACAT
TTTTACCTCTATCCAGTAAATAGAGTTTACAGCTCCTTCTGCAAGAATAA
TATTCCAATGAGAATATGTATTATGTATCTGATTAGACTTTGTTATGTAA
CTGAAATATCGACAGATGAATGCAGAAAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_008282	XLOC_008282	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000198	supercontig	sc0000198:205533..211012 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.2881	0.515294	1.01675	0	2.05564	1.67041	0.934878	4.18257	1.83785	5.28114	2.50709	2.42255	0.912556	3.35488	5.54705	3.7424	3.13537	3.94598	5.69799	6.18886	7.12145	6.97239	3.92633	3.02446	0	0	0	4.60745	1.37128	2.95151

Blast

[Close]

BLAST of TCONS_00014807 vs. Swiss-Prot (Human)
Match: NUBPL (Iron-sulfur protein NUBPL OS=Homo sapiens GN=NUBPL PE=1 SV=3)

HSP 1 Score: 245.743 bits (626), Expect = 4.436e-78
Identity = 111/175 (63.43%), Postives = 141/175 (80.57%), Query Frame = 1

Query:  217 MSMGFLVDENSPIVWRGPMVISAIQKLLFQVQWGHLDYLFIDMPPGTGDTQLSISQLIQINGAVIVTTPQDIALLDARRGAEMFKKVDIPILGLVQNMSQFVCPKCEHVTHVFGDNGAMKLVKDMNIELLGDVPLHLEIRETSDQGIPVVAANPSSPQSLAYCNIASKITEKLPT 741
            MSMGFLV+E+ P+VWRG MV+SAI+KLL QV WG LDYL +DMPPGTGD QLS+SQ I I GAVIV+TPQDIAL+DA +GAEMF++V +P+LGLVQNMS F CPKC+H TH+FG +GA KL + + +E+LGD+PLHL IRE SD G P+V + P S ++ AY  IA ++  +LP+
Sbjct:  142 MSMGFLVEESEPVVWRGLMVMSAIEKLLRQVDWGQLDYLVVDMPPGTGDVQLSVSQNIPITGAVIVSTPQDIALMDAHKGAEMFRRVHVPVLGLVQNMSVFQCPKCKHKTHIFGADGARKLAQTLGLEVLGDIPLHLNIREASDTGQPIVFSQPESDEAKAYLRIAVEVVRRLPS 316

The following BLAST results are available for this feature:

BLAST of TCONS_00014807 vs. Swiss-Prot (Human)

BLAST of TCONS_00014807 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NUBPL	4.436e-78	63.43	Iron-sulfur protein NUBPL OS=Homo sapiens GN=NUBPL...	[more]

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TCONS_00014807 (transcript) - C. hemisphaerica