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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014811 ID=TCONS_00014811|Name=TCONS_00014811|organism=Clytia hemisphaerica|type=transcript|length=1838bp
TTTTAGTACCcttttcaaagagaaaaaccTACTGACTTGATACTTTTATA
TACTACTCGGAGACAAATGTGAGATCGATAACGAGAGAAGAAGACAAGAG
ACGAACGGAAACCAACAGCAATTTCCAAAGCATTAAAGGATCGTTAATAT
TTATAATCGTGTTTTATAACAAAACGCAATCAATATGCCTGTCATTGATC
ACTTCGTGAAACAGCACTTCGCGTCTACACACGTCAACAGCAAGGAGAAA
GAATCAAGTATCTTAGACGGGATCACATCTTCACCTCTCTTTACAGCTAA
GCAACCAAAGCATCATCAAGAACAAGTAAAAACAACCATGGAGAAAGAAA
TCTTTGAACAAGTACACAGTCTACGACGCACAATGGAAGGCAGAGTTGAC
TTCGAAAAGAAGAGTGTCTTTTTGAGTGAGTTAGACCATGGAACAAGTGA
CATTTTACGATGCAAACGTATCATCGTCATCGGGTCAGGATCATCACATC
ACGTCGCAATCTCAACTCGACAATTAATGGAAGAAATGGTCGAGTTACCC
GTATTCATCGAGTTGGCGAGTGATTTCCTCGACCGTGAAGTGCCGATCTT
CCGTAACGATGTTTGCATCTTTTTGAGTCAGTCAGGAGAAACAACAAATG
TCGTTGAATCATGCCGATACTGTCTTCAACACGAAGCTCTCACGATTGCC
GTCACAAATACAGCTGATAGCACCTTGGCTAAAATGTCGAACTTTGTTTT
GGACATTAACGCCGGTAAAGAACATGGGATCACAAGCACCAAGACGTACA
CAAGTCAATTCATGGCTATGACCCTTATCTCTTTACACTTAGCATACGAC
AAACGTCCCAAAGCAGAACGTATCGAATCAATCGTTGAAGAAATGCAACA
TTTACCCGATAAAATCGCTACAGTGTTGGAAGCTACCGAAAAATACCGTA
AAACAGCTCTCTCTATGAAAGACGAGGAGAGTATACTCGTCATGGGCCGC
GGCTACCAACAAGGTACCTGCCATGAaggatctttcaaattcaaggAGGT
AACAGGCACCCACTCGGAGGGTATCCACTCTGGTGAATTAAAGCATGGAC
CATTAGCTTTGATCGACGATCAAATCCCGATTATAATGATCGTAATGAGA
GATAACATTTATGATAAATGTTGCAACGCCATTCAACAGGTGAAAGCAAG
GGGCGGCCGCCCTGTGCTTATTTGCGAAAACGAAGATACTGAAACACGTA
AATGGGCGGATGTTGTTTTAGGTGTTCCAAAGACTATTGACTGTTTAGCT
GGTATTTTAACTGTGATTCCTTTACAGTTATTATCTGTGTATTTAGCAGA
ATCCATGAACAAGAATGTCGATCAACCACCAGCTCTGGTGAAGACGGTGG
TTGAGAAATTCATTCCCAATAACAGAATGAGTTAAATCTTTTgtgttatt
ttgtttttgtaatttattgttttatatcatttttattattatttgacTTT
TCGCACATGTTTTCATTGTGTTTTGTTATTGTCATCTAAGTTGCATTTTG
AACATGTCTTTTCAGCAATAAACTGAGCTGAGTCTGAGCCAACGCTTCAA
GATTTTTTACAGNaccaggtggtcgaaacttaacaaataaccaaCGCTTC
AAGATTTTTTACAATGCATTTGTAGAAAAGCCAAAGTAAACTTCAAGTCT
AAAGCGACTAAAATGttcagaaattaaaatttgtaTATCAAACAGTTGTA
AATATACGATATTCCATATACAAAATATGAATAcagtttttgtaattttt
caaaatttttgaagcgaaatatacaaggaaaaaagtta Run BLAST on NCBI transcript from alignment at sc0000198:323276..328315- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014811 ID=TCONS_00014811|Name=TCONS_00014811|organism=Clytia hemisphaerica|type=transcript|length=5040bp|location=Sequence derived from alignment at sc0000198:323276..328315- (Clytia hemisphaerica)
TTTTAGTACCCTTTTCAAAGAGAAAAACCTACTGACTTGATACTTTTATA
TACTACTCGGAGACAAATGTGGTGAGTTAAAAGTTTGTTATTTTGTGTAG
AGAAGGATTGAAAAATAAAATCTCTCCAGTGACATTTCACAATATGCATA
ACTTTTAGAATATGGAATTACACCGTCTCAGATTGAAGTCTAATTAGCCA
TTTTCACGGCCCGCTCAGCGCGATGCAAATTTGCTTTAATGGGACGCGAT
TTTCACAATGGTGGTATTTCCAATGGCGGGAGCTGCTGTTTCTGGTAATT
ATGGTTGACCAATCTGATGAAAGATGTTCGTTGTCGTTGTAAAATTATGT
CAAGTTTCTCTCGACCAGCTGTCATCATTGCGGAAAATAGCAGAAGTAGG
TCGTTGTATGGATGGGAAAAAAACGAAAAAAAAGGAAGGAACAGCTGGAT
TTAACAATAACCAAACTACAGATTTGACAAATAATTAGAGAAAGAAAGAC
AGATAAGTACTAGTCAAGTTAAACGTTAGCGCCCAGTTGATGTGTCGGTT
AATTTCAAATAAAGTTAAAGATAATGCTTATGTCTTGACCATGAGATAAA
GAGATACCAGAGACAGATAAAGAGATAAGAACACTTCCTGATTGACAAAT
TTTATATTGTTTTGATCTTTTCTTTATAATGTCACTTTGTTACAATAAAA
TGATCGGTCTCGACATCAGGAGTTGCTAATTGATCCATCAGTCACGCAAA
TACAGCAAAGCATTTGGATAATCACGCATCCCTTTGAAAAAGTCCAAATC
ACGCATCACGGCTCAAAAATCTTTTAAATCACGTGATCACGCTAGAAAAA
AGTCCTTATCACACCATCACGAAAACTGCTTTGGGGGCCTCATCTGGAAA
AGGGTTAGAAGGGGTCCCGTTGTGGTACAAGCAGGACACAAAAAACAGCT
GCTGTTATAACCAGTAAAGGTGGAAGACTACATGCAATGGTCTGTTATAA
ACAGCAAAAGAAGGTTAGAAGGATATTAGAAAGTGATACAAAAACAACCT
GTTCGGCTTACACAGCTGCAACTTTTTAGCCTCGCTAACGTAAAATATAA
ATAGGTTTCGCAGTTCCAGTGTTTAAGGCGGATAACTGGGATCATATATT
GCCATTTGTGAAATTTTGCTGGATTTGCAGCTTTCGATAGAGGTAGAAGC
CATCGATGGTCACTTCTGAAAGAGGATGTTAAACATTGGCCAAGTGATAC
GTAATAGGAAATGATGGAAAAGAAAAAGGGAAAATTTTCACTTAATGATG
CAAACAAAAAATGACGAGAATTGTTAAGATTCCAAAAACAGCTCATCAGT
ACGCGAAGGACCATCAAAGAACAGGTTTATATCAACAGGTCTGACTTTTC
TAAATCGCGTGCTCAAAGCCACGAAAAAGGACGCTTGACAGTTTATCGAT
AGTGATGATAACCTAAGGGGTAATTTTAAGATGTCATAAAGTTTTTGCAA
GTGCAAAGTGTGCTTTTGCAACCGTTTCCTTGTTCAGTCTACTTTAATTA
CATTAATCTTCGCGAGAATTAATTTCGCGTTTTCGCGAATATTTGCCTTT
TTCGCTGAAATAACACTAGCGAAATCACGTGAAATTTCTGACTCACGAAG
TTAAATCCAAGTGTTTTTTGGCTTAAAATATTATGTAGATTTGCTATTAG
TGATAAAAACAGGCAGTTAAAGGGTAATTTTTCGATTCATTTTTGGTTGA
TTAGCAAAATCAAATGATCTACGCGATATTTTTCGAAATCCTGAATCGCG
AAAATGAATCCATTTTTGTGCTCGCGAAAATTAATCCGATTAAAGTTTTC
AGATCATATCGAAGCGATGTAATGCTGTGATATTTTGGAGGTTTGATGAA
ATCTCAGTTGTTTGATAAGTCAACACAGTTTTGTTAGTATGTCAACAACA
CTATATCCGGCCTGAACTCATTTTTCTTTTCTCAAGTGAGACTTGTGTTT
ATTTTCTGGTCTAAAGTACTTCAGTTTCCTTTTAAAGGAATCAGGTTGAA
GAGGATCTCTATAAAAGCTGGAGTGTTCGATCATTAGCAATATTAGTTGT
TTATTTGTCATCGTGCTTGTAGTTTGAAGGAAGATACTCATTTTAAAGCT
AGGTAAGCAGTTCCTTACACCATTCGTTTACTTTCTTATGACATATAGCT
GCTGAGTGTTAAGAGTTAGTACTTACTTGACTTTCGGTGTAGTCTGTAAG
TAAGGACATTCCGGTTAGAGGAGAGAAGATTCGCCATCTACTGCAGACAC
AACGTTCATACCTAATTAATGACTGGCACAAAGATCATATCAGCTAGCTT
TCAGCCTGGGCTTTCGGCGAACACAGTCAAACAAAGCTTCGAAAGCTCTT
TATCTTTTATATCGAAAACTATTGGAGACTATGTATAATTTGTGTGCAAA
TCGAGTTATTCTCGGCGAAGTGAAGGCAGTTTTTTAAAGTCACTTTTTAT
TGATGAGAATGTTATAATTACTACTATTCTATTCCTGGACATCCGAAGTA
ACCTCAATTGTATAATACCAGTTTTAGAAGTTATTTTAGACGCAGTGATT
ATCTTTCAAAATAAATCTAACTTGAGCGGTCATCAGTTCTTAGCAAAACA
CATGTTGATTATGAATGTTAATTGAGTTTATACAGCTCGTATATAACTCT
ATTTCAACGTTCACTGATATCAGGTGATTATATGCTTCCCTAGCGTTTTG
TACTGGCTAGGGAAACCGACTAGATTCTAATGTTTTAAGTTTTACTGGGC
ATCTTTTTACATTCGACACTGTAATATATTACGAAAATACTTTGTCAATC
AATCATCTTTTTATTATTGAGTACGTCATAAATCAATAAAACTATTTCTC
AATTCCTCGTGAGATTCACTTACTAATGATCAGTTTTTCGCAAAAAAATG
TCAAAAACAATAATTTATAGACGATGAAACTGTTGGGTGCGTCAACTAAG
AAACTCTCCAATTTAATTATAGACGGAAATCTAATATAGGACTCAAATTA
TAAAAGGAAAAAATGTATCGCATTTTTTGTTATATTTAAATGCCTGTCTT
ACATAATTGAAATCTAATGATCAAAATAATATCCTGTTAATGATTAACTT
GATCGCTGATTGGTTCATTAGAAAGGAAAGTAGCCAATCATTGGGCTTGC
TTTTGATATTGTAATTGATGATTTCAGAAACATTTAAATAATTTGAAATT
GTTTCCTTTTTTCTTTATAACAGAGATCGATAACGAGAGAAGAAGACAAG
AGACGAACGGAAACCAACAGCAATTTCCAAAGCATTAAAGGATCGTTAAT
ATTTATAATCGTGTTTTATAACAAAACGCAATCAATATGCCTGTCATTGA
TCACTTCGTGAAACAGCACTTCGCGTCTACACACGTCAACAGCAAGGAGA
AAGAATCAAGTATCTTAGACGGGATCACATCTTCACCTCTCTTTACAGCT
AAGCAACCAAAGCATCATCAAGAACAAGTAAAAACAACCATGGAGAAAGA
AATCTTTGAACAAGTACACAGTCTACGACGCACAATGGAAGGCAGAGTTG
ACTTCGAAAAGAAGAGTGTCTTTTTGAGTGAGTTAGACCATGGAACAAGT
GACATTTTACGATGCAAACGTATCATCGTCATCGGGTCAGGATCATCACA
TCACGTCGCAATCTCAACTCGACAATTAATGGAAGAAATGGTCGAGTTAC
CCGTATTCATCGAGTTGGCGAGTGATTTCCTCGACCGTGAAGTGCCGATC
TTCCGTAACGATGTTTGCATCTTTTTGAGTCAGTCAGGAGAAACAACAAA
TGTCGTTGAATCATGCCGATACTGTCTTCAACACGAAGCTCTCACGATTG
CCGTCACAAATACAGCTGATAGCACCTTGGCTAAAATGTCGAACTTTGTT
TTGGACATTAACGCCGGTAAAGAACATGGGATCACAAGCACCAAGACGTA
CACAAGTCAATTCATGGCTATGACCCTTATCTCTTTACACTTAGCATACG
ACAAACGTCCCAAAGCAGAACGTATCGAATCAATCGTTGAAGAAATGCAA
CATTTACCCGATAAAATCGCTACAGTGTTGGAAGCTACCGAAAAATACCG
TAAAACAGCTCTCTCTATGAAAGACGAGGAGAGTATACTCGTCATGGGCC
GCGGCTACCAACAAGGTACCTGCCATGAAGGATCTTTCAAATTCAAGGAG
GTAACAGGCACCCACTCGGAGGGTATCCACTCTGGTGAATTAAAGCATGG
ACCATTAGCTTTGATCGACGATCAAATCCCGATTATAATGATCGTAATGA
GAGATAACATTTATGATAAATGTTGCAACGCCATTCAACAGGTGAAAGCA
AGGGGCGGCCGCCCTGTGCTTATTTGCGAAAACGAAGATACTGAAACACG
TAAATGGGCGGATGTTGTTTTAGGTGTTCCAAAGACTATTGACTGTTTAG
CTGGTATTTTAACTGTGATTCCTTTACAGTTATTATCTGTGTATTTAGCA
GAATCCATGAACAAGAATGTCGATCAACCACCAGCTCTGGTGAAGACGGT
GGTTGAGAAATTCATTCCCAATAACAGAATGAGTTAAATCTTTTGTGTTA
TTTTGTTTTTGTAATTTATTGTTTTATATCATTTTTATTATTATTTGACT
TTTCGCACATGTTTTCATTGTGTTTTGTTATTGTCATCTAAGTTGCATTT
TGAACATGTCTTTTCAGCAATAAACTGAGCTGAGTCTGAGCCAACGCTTC
AAGATTTTTTACAGNACCAGGTGGTCGAAACTTAACAAATAACCAACGCT
TCAAGATTTTTTACAATGCATTTGTAGAAAAGCCAAAGTAAACTTCAAGT
CTAAAGCGACTAAAATGTTCAGAAATTAAAATTTGTATATCAAACAGTTG
TAAATATACGATATTCCATATACAAAATATGAATACAGTTTTTGTAATTT
TTCAAAATTTTTGAAGCGAAATATACAAGGAAAAAAGTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014811-exon-sc0000198-1575043694:328245..328315 | TCONS_00014811-exon-sc0000198-1575043694:328245..328315 | Clytia hemisphaerica | exon |
| TCONS_00014811-exon-sc0000198-1575043694:323276..325042 | TCONS_00014811-exon-sc0000198-1575043694:323276..325042 | Clytia hemisphaerica | exon |
| TCONS_00014811-exon-sc0000198-1510915933:328245..328315 | TCONS_00014811-exon-sc0000198-1510915933:328245..328315 | Clytia hemisphaerica | exon |
| TCONS_00014811-exon-sc0000198-1510915933:323276..325042 | TCONS_00014811-exon-sc0000198-1510915933:323276..325042 | Clytia hemisphaerica | exon |
| TCONS_00014811-exon-sc0000198-1491911889:328245..328315 | TCONS_00014811-exon-sc0000198-1491911889:328245..328315 | Clytia hemisphaerica | exon |
| TCONS_00014811-exon-sc0000198-1491911889:323276..325042 | TCONS_00014811-exon-sc0000198-1491911889:323276..325042 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000198 | supercontig | sc0000198:323276..328315 - |
Blast
BLAST of TCONS_00014811 vs. Swiss-Prot (Human)
Match: GFPT2 (Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 OS=Homo sapiens GN=GFPT2 PE=1 SV=3) HSP 1 Score: 378.637 bits (971), Expect = 2.635e-121 Identity = 180/354 (50.85%), Postives = 248/354 (70.06%), Query Frame = 2
Query: 338 MEKEIFEQVHSLRRTMEGRVDFEKKSVFLSELDHGTSDILRCKRIIVIGSGSSHHVAISTRQLMEEMVELPVFIELASDFLDREVPIFRNDVCIFLSQSGETTNVVESCRYCLQHEALTIAVTNTADSTLAKMSNFVLDINAGKEHGITSTKTYTSQFMAMTLISLHLAYDKRPKAERIESIVEEMQHLPDKIATVLEATEKYRKTALSMKDEESILVMGRGYQQGTCHEGSFKFKEVTGTHSEGIHSGELKHGPLALIDDQIPIIMIVMRDNIYDKCCNAIQQVKARGGRPVLICENEDTETRKWADVVLGVPKTIDCLAGILTVIPLQLLSVYLAESMNKNVDQPPALVKTV 1399
M+KEIFEQ S+ TM GRV+FE +V L L +I RC+R+IVIG G+S+H A++TRQ++EE+ ELPV +ELASDFLDR P+FR+DVC F+SQSGET + + + RYC ALT+ VTNT S++++ ++ + INAG E G+ STK YTSQF+++ + L ++ D+ R + I+ ++ LP+ I VL EK AL + + S+LVMGRGY TC EG+ K KE+T HSEGI +GELKHGPLALID Q+P+IM++M+D + KC NA+QQV AR GRP+++C +DTE+ K+A + +P T+DCL GIL+VIPLQLLS +LA +VD P L K+V
Sbjct: 326 MQKEIFEQPESVFNTMRGRVNFETNTVLLGGLKDHLKEIRRCRRLIVIGCGTSYHAAVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADTLLALRYCKDRGALTVGVTNTVGSSISRETDCGVHINAGPEIGVASTKAYTSQFISLVMFGLMMSEDRISLQNRRQEIIRGLRSLPELIKEVLSLEEKIHDLALELYTQRSLLVMGRGYNYATCLEGALKIKEITYMHSEGILAGELKHGPLALIDKQMPVIMVIMKDPCFAKCQNALQQVTARQGRPIILCSKDDTESSKFAYKTIELPHTVDCLQGILSVIPLQLLSFHLAVLRGYDVDFPRNLAKSV 679
The following BLAST results are available for this feature:
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