TCONS_00014820 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014820
Unique NameTCONS_00014820
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1055

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014820 ID=TCONS_00014820|Name=TCONS_00014820|organism=Clytia hemisphaerica|type=transcript|length=1055bp
GAACTAGATTTCAGATTCAAGTGGAACATTTGTTGGCCTATCATCACTCA
GTTTTCTCTATTGCAActccaaagaaaatgaaagtaatgTTTCTATTGTG
GTTATTTATCATTGTATCTATTGAAGCTCGACATCGGCTTTTTAACTTAA
TTTCTACTGGAAAGACAATCATTTACACTCCTTTCCATACGGAGGAGAAC
ATTCCTTATCAAAGATGTGTGAGTTTCTGTTCATTAAACAGAGAATGCTT
TTCCTTCGACTTCACACCAATGCCACCGTTCGGAGTATGTCAATTCTATG
ATATTCCATTCATAACATATCAAAATGAATCAAGAGCATTAAAGCAACAA
ACTGGTACCAAGTACTATTCATATGTAATGTTCACAAGTTGCGCAGACTG
GTACAAAATGGGTGCGCGTAAAGATGGCGTCTACGAAGTGTTTCTCTTGG
GACGGTATCAGCGCGTTGTATATTGTCTTATGCAGCAAGCTGGTGGAGGT
TGGATGGCTTTCCAACGAAGATATGATGGAAgcgttgattttttttcaag
agaCTGGAACGAATGTAAAAAAGGGTTTGGAAACGAGGATGGGGAATATT
GGCTTGGGAATGAATTAGTACATCTTTTAACAACTTCAGAAGATCACGAT
TTACTTGTAAGAGGTATCGATTTCCATCAAGTCACCAAAATGGAAATGAT
TCCAAAAGTACGTATCGAAAGTGAAACACTCAACTATCAATTCACTTACC
ATCCAGCTGTTGGTCCACAAAATTGGGGTTATCACATGAAAGGTGTActc
ttttcaacaaaagataGAGATAATGACTGGAATAATGATCCAAGTTCATC
GTGTGCAAAACATTATGGACCTTGGTGGTTCAAGGATTGCCATGACCATG
CAATGAATGGAGTATATAGGAATTCCGAGAACCTTGGTGTAACAAATGGT
GTTATTTGGCGATTTTTTGACGGAAATGGTAACTATAAAAActtgaaaga
aagtttgatCATGATCAGACAATCATCTTTTTTACCCTAACATGACGTGT
GATAA
Run BLAST on NCBI

protein sequence of TCONS_00014820-protein

>TCONS_00014820-protein ID=TCONS_00014820-protein|Name=TCONS_00014820-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp
TRFQIQVEHLLAYHHSVFSIATPKKMKVMFLLWLFIIVSIEARHRLFNLI
STGKTIIYTPFHTEENIPYQRCVSFCSLNRECFSFDFTPMPPFGVCQFYD
IPFITYQNESRALKQQTGTKYYSYVMFTSCADWYKMGARKDGVYEVFLLG
RYQRVVYCLMQQAGGGWMAFQRRYDGSVDFFSRDWNECKKGFGNEDGEYW
LGNELVHLLTTSEDHDLLVRGIDFHQVTKMEMIPKVRIESETLNYQFTYH
PAVGPQNWGYHMKGVLFSTKDRDNDWNNDPSSSCAKHYGPWWFKDCHDHA
MNGVYRNSENLGVTNGVIWRFFDGNGNYKNLKESLIMIRQSSFLP
Run BLAST on NCBI

transcript from alignment at sc0000198:26908..27962

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014820 ID=TCONS_00014820|Name=TCONS_00014820|organism=Clytia hemisphaerica|type=transcript|length=1055bp|location=Sequence derived from alignment at sc0000198:26908..27962 (Clytia hemisphaerica)
TTATCACACGTCATGTTAGGGTAAAAAAGATGATTGTCTGATCATGatca
aactttctttcaagTTTTTATAGTTACCATTTCCGTCAAAAAATCGCCAA
ATAACACCATTTGTTACACCAAGGTTCTCGGAATTCCTATATACTCCATT
CATTGCATGGTCATGGCAATCCTTGAACCACCAAGGTCCATAATGTTTTG
CACACGATGAACTTGGATCATTATTCCAGTCATTATCTCtatcttttgtt
gaaaagagTACACCTTTCATGTGATAACCCCAATTTTGTGGACCAACAGC
TGGATGGTAAGTGAATTGATAGTTGAGTGTTTCACTTTCGATACGTACTT
TTGGAATCATTTCCATTTTGGTGACTTGATGGAAATCGATACCTCTTACA
AGTAAATCGTGATCTTCTGAAGTTGTTAAAAGATGTACTAATTCATTCCC
AAGCCAATATTCCCCATCCTCGTTTCCAAACCCTTTTTTACATTCGTTCC
AGtctcttgaaaaaaaatcaacgcTTCCATCATATCTTCGTTGGAAAGCC
ATCCAACCTCCACCAGCTTGCTGCATAAGACAATATACAACGCGCTGATA
CCGTCCCAAGAGAAACACTTCGTAGACGCCATCTTTACGCGCACCCATTT
TGTACCAGTCTGCGCAACTTGTGAACATTACATATGAATAGTACTTGGTA
CCAGTTTGTTGCTTTAATGCTCTTGATTCATTTTGATATGTTATGAATGG
AATATCATAGAATTGACATACTCCGAACGGTGGCATTGGTGTGAAGTCGA
AGGAAAAGCATTCTCTGTTTAATGAACAGAAACTCACACATCTTTGATAA
GGAATGTTCTCCTCCGTATGGAAAGGAGTGTAAATGATTGTCTTTCCAGT
AGAAATTAAGTTAAAAAGCCGATGTCGAGCTTCAATAGATACAATGATAA
ATAACCACAATAGAAAcattactttcattttctttggagTTGCAATAGAG
AAAACTGAGTGATGATAGGCCAACAAATGTTCCACTTGAATCTGAAATCT
AGTTC

Coding sequence (CDS) from alignment at sc0000198:26908..27962

>TCONS_00014820 ID=TCONS_00014820|Name=TCONS_00014820|organism=Clytia hemisphaerica|type=CDS|length=1038bp|location=Sequence derived from alignment at sc0000198:26908..27962 (Clytia hemisphaerica)
TTAGGGTAAAAAAGATGATTGTCTGATCATGatcaaactttctttcaagT
TTTTATAGTTACCATTTCCGTCAAAAAATCGCCAAATAACACCATTTGTT
ACACCAAGGTTCTCGGAATTCCTATATACTCCATTCATTGCATGGTCATG
GCAATCCTTGAACCACCAAGGTCCATAATGTTTTGCACACGATGAACTTG
GATCATTATTCCAGTCATTATCTCtatcttttgttgaaaagagTACACCT
TTCATGTGATAACCCCAATTTTGTGGACCAACAGCTGGATGGTAAGTGAA
TTGATAGTTGAGTGTTTCACTTTCGATACGTACTTTTGGAATCATTTCCA
TTTTGGTGACTTGATGGAAATCGATACCTCTTACAAGTAAATCGTGATCT
TCTGAAGTTGTTAAAAGATGTACTAATTCATTCCCAAGCCAATATTCCCC
ATCCTCGTTTCCAAACCCTTTTTTACATTCGTTCCAGtctcttgaaaaaa
aatcaacgcTTCCATCATATCTTCGTTGGAAAGCCATCCAACCTCCACCA
GCTTGCTGCATAAGACAATATACAACGCGCTGATACCGTCCCAAGAGAAA
CACTTCGTAGACGCCATCTTTACGCGCACCCATTTTGTACCAGTCTGCGC
AACTTGTGAACATTACATATGAATAGTACTTGGTACCAGTTTGTTGCTTT
AATGCTCTTGATTCATTTTGATATGTTATGAATGGAATATCATAGAATTG
ACATACTCCGAACGGTGGCATTGGTGTGAAGTCGAAGGAAAAGCATTCTC
TGTTTAATGAACAGAAACTCACACATCTTTGATAAGGAATGTTCTCCTCC
GTATGGAAAGGAGTGTAAATGATTGTCTTTCCAGTAGAAATTAAGTTAAA
AAGCCGATGTCGAGCTTCAATAGATACAATGATAAATAACCACAATAGAA
AcattactttcattttctttggagTTGCAATAGAGAAAACTGAGTGATGA
TAGGCCAACAAATGTTCCACTTGAATCTGAAATCTAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008290XLOC_008290Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014820-proteinTCONS_00014820-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014820-exon-sc0000198-1491911889:26908..27962TCONS_00014820-exon-sc0000198-1491911889:26908..27962Clytia hemisphaericaexon
TCONS_00014820-exon-sc0000198-1510915933:26908..27962TCONS_00014820-exon-sc0000198-1510915933:26908..27962Clytia hemisphaericaexon
TCONS_00014820-exon-sc0000198-1575043694:26908..27962TCONS_00014820-exon-sc0000198-1575043694:26908..27962Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000198supercontigsc0000198:26908..27962 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0419359	0.0817882	0.0474819	0.0464537	0	0	0.377406	0.151424	0.600755	0.437725	0.849733	0.363078	4.18353	5.30046	1.11919	0.868854	0.787027	0.645342	4.99282	4.29166	1.13529	1.12728	0.865491	1.04914	1.12562	2.37082	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014715Fibrinogen_a/b/g_C_2
IPR014716Fibrinogen_a/b/g_C_1
Blast
[Close]
BLAST of TCONS_00014820 vs. Swiss-Prot (Human)
Match: FGL2 (Fibroleukin OS=Homo sapiens GN=FGL2 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.652e-32
Identity = 83/246 (33.74%), Postives = 125/246 (50.81%), Query Frame = 3 
Query:  342 KQQTGTKYYSYVMFTSCADWYKMGARKDGVYEVFLLGRYQRV-VYCLMQQAGGGWMAFQRRYDGSVDFFSRDWNECKKGFGNEDGEYWLGNELVHLLTTSEDHDLLVRGIDFHQVTKMEMIPKVRIESETLNYQF---TYHPAVGPQ---NWGYHMKGVLFSTKDRDNDWNNDPSSSCAKHYGP-WWFKDCHDHAMNGVYRNSENLGVTNGVIWRFFDG-----NGNYK-NLKESLIMIRQSSFLP 1037
            ++Q  ++   ++++  C+D+Y +G R    Y V    +     VYC M+  GGGW   Q R DGS +F +R W + K GFGN   E+WLGN+ +HLLT S++  L +   DF+ V    +  +  + +E L Y+     Y+   G     N  Y+     F+T D+DND    PS +C  +Y   WWF  C    +NG Y + +  GV NG+ W  + G      G YK + KE+ +MIR   F P
Sbjct:  197 QEQIQSRPVQHLIYKDCSDYYAIGKRSSETYRVTPDPKNSSFEVYCDMETMGGGWTVLQARLDGSTNF-TRTWQDYKAGFGNLRREFWLGNDKIHLLTKSKEMILRIDLEDFNGVELYALYDQFYVANEFLKYRLHVGNYNGTAGDALRFNKHYNHDLKFFTTPDKDND--RYPSGNCGLYYSSGWWFDACLSANLNGKYYHQKYRGVRNGIFWGTWPGVSEAHPGGYKSSFKEAKMMIRPKHFKP 439
The following BLAST results are available for this feature:
BLAST of TCONS_00014820 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FGL22.652e-3233.74Fibroleukin OS=Homo sapiens GN=FGL2 PE=1 SV=1[more]
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