TCONS_00014821 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014821
Unique NameTCONS_00014821
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length481

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014821 ID=TCONS_00014821|Name=TCONS_00014821|organism=Clytia hemisphaerica|type=transcript|length=481bp
GATATTTAGTGACTAACTTCCATAATTCAGGACTTTCTTCTCTATCAGGA
ACATTAGCAGAAATAACACTATCTATGTGTtcgatatatttttcttttcc
gtCTTCAAGTTTTGGGACATCTTTAGCCCAAAGCAAACAATGATCATGGG
GACTACCCCTGAAAGTAAATTCTACTCTGAGAGCatagtatgtaattttt
ccaagTTGGCCATCCATTATAATCTCTTTAAAAAACAACTCTTTTCTGTA
TTGATATTGGCGCACAAGCACAACAGGATTGCTATTAAGTAGGGCACATC
TAGATTGGTAATCAAGAAGTTCATGATCAGTATCAGCATCCCCACTTAAT
TGTCTGATAATAGTAACAAATTCCTCCCAACGTAAATCTGCACAAGAGAG
AGTCATAAAGTATGTTGGGACACCAAGTTGTTTAACCATTGCAAGAACAT
CAGATAACATATGTTGCCAGTATGCAGGGGN
Run BLAST on NCBI

protein sequence of TCONS_00014821-protein

>TCONS_00014821-protein ID=TCONS_00014821-protein|Name=TCONS_00014821-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
XPAYWQHMLSDVLAMVKQLGVPTYFMTLSCADLRWEEFVTIIRQLSGDAD
TDHELLDYQSRCALLNSNPVVLVRQYQYRKELFFKEIIMDGQLGKITYYA
LRVEFTFRGSPHDHCLLWAKDVPKLEDGKEKYIEHIDSVISANVPDREES
PELWKLVTKY
Run BLAST on NCBI

transcript from alignment at sc0000198:94789..95269

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014821 ID=TCONS_00014821|Name=TCONS_00014821|organism=Clytia hemisphaerica|type=transcript|length=481bp|location=Sequence derived from alignment at sc0000198:94789..95269 (Clytia hemisphaerica)
NCCCCTGCATACTGGCAACATATGTTATCTGATGTTCTTGCAATGGTTAA
ACAACTTGGTGTCCCAACATACTTTATGACTCTCTCTTGTGCAGATTTAC
GTTGGGAGGAATTTGTTACTATTATCAGACAATTAAGTGGGGATGCTGAT
ACTGATCATGAACTTCTTGATTACCAATCTAGATGTGCCCTACTTAATAG
CAATCCTGTTGTGCTTGTGCGCCAATATCAATACAGAAAAGAGTTGTTTT
TTAAAGAGATTATAATGGATGGCCAActtggaaaaattacatactatGCT
CTCAGAGTAGAATTTACTTTCAGGGGTAGTCCCCATGATCATTGTTTGCT
TTGGGCTAAAGATGTCCCAAAACTTGAAGacggaaaagaaaaatatatcg
aACACATAGATAGTGTTATTTCTGCTAATGTTCCTGATAGAGAAGAAAGT
CCTGAATTATGGAAGTTAGTCACTAAATATC

Coding sequence (CDS) from alignment at sc0000198:94789..95269

>TCONS_00014821 ID=TCONS_00014821|Name=TCONS_00014821|organism=Clytia hemisphaerica|type=CDS|length=480bp|location=Sequence derived from alignment at sc0000198:94789..95269 (Clytia hemisphaerica)
NCCCCTGCATACTGGCAACATATGTTATCTGATGTTCTTGCAATGGTTAA
ACAACTTGGTGTCCCAACATACTTTATGACTCTCTCTTGTGCAGATTTAC
GTTGGGAGGAATTTGTTACTATTATCAGACAATTAAGTGGGGATGCTGAT
ACTGATCATGAACTTCTTGATTACCAATCTAGATGTGCCCTACTTAATAG
CAATCCTGTTGTGCTTGTGCGCCAATATCAATACAGAAAAGAGTTGTTTT
TTAAAGAGATTATAATGGATGGCCAActtggaaaaattacatactatGCT
CTCAGAGTAGAATTTACTTTCAGGGGTAGTCCCCATGATCATTGTTTGCT
TTGGGCTAAAGATGTCCCAAAACTTGAAGacggaaaagaaaaatatatcg
aACACATAGATAGTGTTATTTCTGCTAATGTTCCTGATAGAGAAGAAAGT
CCTGAATTATGGAAGTTAGTCACTAAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008291XLOC_008291Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014821-exon-sc0000198-1491911889:94789..95269TCONS_00014821-exon-sc0000198-1491911889:94789..95269Clytia hemisphaericaexon
TCONS_00014821-exon-sc0000198-1510915933:94789..95269TCONS_00014821-exon-sc0000198-1510915933:94789..95269Clytia hemisphaericaexon
TCONS_00014821-exon-sc0000198-1575043694:94789..95269TCONS_00014821-exon-sc0000198-1575043694:94789..95269Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014821-proteinTCONS_00014821-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000198supercontigsc0000198:94789..95269 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.79095	3.16309	4.55104	2.16922	0.406934	0.416986	0	0.947641	0.496198	0.136145	0	0.620502	0.270634	0.80359	0.407961	0.94118	0.554615	0.155908	0.843922	1.23755	2.62542	2.63527	1.18627	2.08523	0.14004	0.488892	6.67061	2.82576	1.74092	3.24875
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR025476Helitron_helicase-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014821 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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