TCONS_00014823 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014823
Unique NameTCONS_00014823
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length805

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014823 ID=TCONS_00014823|Name=TCONS_00014823|organism=Clytia hemisphaerica|type=transcript|length=805bp
GACGACTACAAAATTTGGGAGAGTACAAAaattgtttatatcagcatctT
GTAGCGATCTCATTTCAGGTTTTATTGCGCTACCTATGCTTGGATTTAGT
ATCATCCGTGGTTTACATTGTTACGAACAAGCCCTCGCAATGTCATTTCT
GGTGATCTCTATTCTTGGTGATGGTTTTTTTATGATGACTATATCGATAT
TAAGACTACGTTCAATCATGAAACCTTTAAACAGTAATACAgagataaag
aaaaacaaaatgataATCGTTATTGGGATAGGtgtatttataatttttgc
GCTTgctcatacatgttttttcttttatgtttatgggcataatattattt
tttacCAGATTATAGGTGTATTAACAGCAATTATATTAATTACTGTAAAC
ACTGTGCTAATGTTTTCTGCTTTATACACTTTGTACCAAATACGGAAACA
AGAACATCAAAAAGAGCTTACCTTTAGAAGTAAGAAAAGACTGTCAATCC
AACGCCACTCCGCCAACACATTGCTTGTTATcggaattttgatgtttttt
gcatTACTCCTACAGATACCTTCTCTTATCTTGCTAAACAAAAATTTGAG
CACATCAGTACTACTTTCTGGAGATATTTTCATATGGACAAAAAGAAATG
CTGACTTTTTGGCTATAATAGCAACATTCAATTCCGGATTAAATTCAGTG
GTTTTGATGTCCAGAAGTAACAAAATCCGAACTTAtctaagaagaaaaat
gagATTTACAGCTAATGACACTAATGGTAACCCTAGAAACCAAACTAACT
CGGGT
Run BLAST on NCBI

protein sequence of TCONS_00014823-protein

>TCONS_00014823-protein ID=TCONS_00014823-protein|Name=TCONS_00014823-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
TTTKFGRVQKLFISASCSDLISGFIALPMLGFSIIRGLHCYEQALAMSFL
VISILGDGFFMMTISILRLRSIMKPLNSNTEIKKNKMIIVIGIGVFIIFA
LAHTCFFFYVYGHNIIFYQIIGVLTAIILITVNTVLMFSALYTLYQIRKQ
EHQKELTFRSKKRLSIQRHSANTLLVIGILMFFALLLQIPSLILLNKNLS
TSVLLSGDIFIWTKRNADFLAIIATFNSGLNSVVLMSRSNKIRTYLRRKM
RFTANDTNGNPRNQTNSG
Run BLAST on NCBI

transcript from alignment at sc0000198:102199..103003

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014823 ID=TCONS_00014823|Name=TCONS_00014823|organism=Clytia hemisphaerica|type=transcript|length=805bp|location=Sequence derived from alignment at sc0000198:102199..103003 (Clytia hemisphaerica)
ACCCGAGTTAGTTTGGTTTCTAGGGTTACCATTAGTGTCATTAGCTGTAA
ATctcatttttcttcttagaTAAGTTCGGATTTTGTTACTTCTGGACATC
AAAACCACTGAATTTAATCCGGAATTGAATGTTGCTATTATAGCCAAAAA
GTCAGCATTTCTTTTTGTCCATATGAAAATATCTCCAGAAAGTAGTACTG
ATGTGCTCAAATTTTTGTTTAGCAAGATAAGAGAAGGTATCTGTAGGAGT
AatgcaaaaaacatcaaaattccgATAACAAGCAATGTGTTGGCGGAGTG
GCGTTGGATTGACAGTCTTTTCTTACTTCTAAAGGTAAGCTCTTTTTGAT
GTTCTTGTTTCCGTATTTGGTACAAAGTGTATAAAGCAGAAAACATTAGC
ACAGTGTTTACAGTAATTAATATAATTGCTGTTAATACACCTATAATCTG
gtaaaaaataatattatgcccataaacataaaagaaaaaacatgtatgag
cAAGCgcaaaaattataaatacaCCTATCCCAATAACGATtatcattttg
tttttctttatctcTGTATTACTGTTTAAAGGTTTCATGATTGAACGTAG
TCTTAATATCGATATAGTCATCATAAAAAAACCATCACCAAGAATAGAGA
TCACCAGAAATGACATTGCGAGGGCTTGTTCGTAACAATGTAAACCACGG
ATGATACTAAATCCAAGCATAGGTAGCGCAATAAAACCTGAAATGAGATC
GCTACAagatgctgatataaacaattTTTGTACTCTCCCAAATTTTGTAG
TCGTC

Coding sequence (CDS) from alignment at sc0000198:102199..103003

>TCONS_00014823 ID=TCONS_00014823|Name=TCONS_00014823|organism=Clytia hemisphaerica|type=CDS|length=804bp|location=Sequence derived from alignment at sc0000198:102199..103003 (Clytia hemisphaerica)
ACCCGAGTTAGTTTGGTTTCTAGGGTTACCATTAGTGTCATTAGCTGTAA
ATctcatttttcttcttagaTAAGTTCGGATTTTGTTACTTCTGGACATC
AAAACCACTGAATTTAATCCGGAATTGAATGTTGCTATTATAGCCAAAAA
GTCAGCATTTCTTTTTGTCCATATGAAAATATCTCCAGAAAGTAGTACTG
ATGTGCTCAAATTTTTGTTTAGCAAGATAAGAGAAGGTATCTGTAGGAGT
AatgcaaaaaacatcaaaattccgATAACAAGCAATGTGTTGGCGGAGTG
GCGTTGGATTGACAGTCTTTTCTTACTTCTAAAGGTAAGCTCTTTTTGAT
GTTCTTGTTTCCGTATTTGGTACAAAGTGTATAAAGCAGAAAACATTAGC
ACAGTGTTTACAGTAATTAATATAATTGCTGTTAATACACCTATAATCTG
gtaaaaaataatattatgcccataaacataaaagaaaaaacatgtatgag
cAAGCgcaaaaattataaatacaCCTATCCCAATAACGATtatcattttg
tttttctttatctcTGTATTACTGTTTAAAGGTTTCATGATTGAACGTAG
TCTTAATATCGATATAGTCATCATAAAAAAACCATCACCAAGAATAGAGA
TCACCAGAAATGACATTGCGAGGGCTTGTTCGTAACAATGTAAACCACGG
ATGATACTAAATCCAAGCATAGGTAGCGCAATAAAACCTGAAATGAGATC
GCTACAagatgctgatataaacaattTTTGTACTCTCCCAAATTTTGTAG
TCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008293XLOC_008293Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014823-exon-sc0000198-1491911889:102199..103003TCONS_00014823-exon-sc0000198-1491911889:102199..103003Clytia hemisphaericaexon
TCONS_00014823-exon-sc0000198-1510915933:102199..103003TCONS_00014823-exon-sc0000198-1510915933:102199..103003Clytia hemisphaericaexon
TCONS_00014823-exon-sc0000198-1575043694:102199..103003TCONS_00014823-exon-sc0000198-1575043694:102199..103003Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014823-proteinTCONS_00014823-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000198supercontigsc0000198:102199..103003 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.178579	0.232191	0.134798	0	0	0.0634341	0.153061	0.286588	0.100324	0.1864	0.180925	0.237866	0.673016	0.452251	0.101403	0.145095	0.0446863	0.0916039	0.569501	0.927021	0	0	0	0.0620508	0	0.0570389	0	0	0.264279	0.0673145
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014823 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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