Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014904 ID=TCONS_00014904|Name=TCONS_00014904|organism=Clytia hemisphaerica|type=transcript|length=1958bpRun BLAST on NCBI protein sequence of TCONS_00014904-protein >TCONS_00014904-protein ID=TCONS_00014904-protein|Name=TCONS_00014904-protein|organism=Clytia hemisphaerica|type=polypeptide|length=416bp MAMRQPACVIDNGTGYTKMGFAGNTEPQYIIPSAIAVKESAKVGGKSTSFRun BLAST on NCBI transcript from alignment at sc0000200:356209..366234- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014904 ID=TCONS_00014904|Name=TCONS_00014904|organism=Clytia hemisphaerica|type=transcript|length=10026bp|location=Sequence derived from alignment at sc0000200:356209..366234- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000200:356209..366234- >TCONS_00014904 ID=TCONS_00014904|Name=TCONS_00014904|organism=Clytia hemisphaerica|type=CDS|length=15012bp|location=Sequence derived from alignment at sc0000200:356209..366234- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00014904 vs. Swiss-Prot (Human)
Match: ARP3 (Actin-related protein 3 OS=Homo sapiens GN=ACTR3 PE=1 SV=3) HSP 1 Score: 720.309 bits (1858), Expect = 0.000e+0 Identity = 351/418 (83.97%), Postives = 378/418 (90.43%), Query Frame = 2 Query: 206 MAMRQPACVIDNGTGYTKMGFAGNTEPQYIIPSAIAVKESAKVGGKSTS--FKGVDDLDFYIGDEAIDRPTYGTKWPIRHGICEDWDLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITFFIQQLLKEREIGIPPEQSMETAKAIKERFCYTCPDIVKEFTKYDTDPAKWIKSYEGQNHITKKKFDIDVGYERFLGPEIFFHPEFSNPDFSTSISETVDSAIQNCPIDVRRGLYKNVVLSGGSTMFRDFGRRLQRDLKRVVDQRLKASEEISGGRIKPKPIDCAVITHSMQRYAVWFGGSMLASTPEFYQVCHTKAQYDEYGPSIARHNPVFGTMS 1453 MA R PACV+D GTGYTK+G+AGNTEPQ+IIPS IA+KESAKVG ++ KGVDDLDF+IGDEAI++PTY TKWPIRHGI EDWDLMERF EQ IFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT+FIQQLL++RE+GIPPEQS+ETAKA+KER+ Y CPD+VKEF KYDTD +KWIK Y G N I+KK+F IDVGYERFLGPEIFFHPEF+NPDF+ ISE VD IQNCPIDVRR LYKN+VLSGGSTMFRDFGRRLQRDLKR VD RLK SEE+SGGR+KPKPID VITH MQRYAVWFGGSMLASTPEFYQVCHTK Y+E GPSI RHNPVFG MS Sbjct: 1 MAGRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVFGVMS 418 The following BLAST results are available for this feature:
BLAST of TCONS_00014904 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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