TCONS_00014910 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014910
Unique NameTCONS_00014910
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length848

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014910 ID=TCONS_00014910|Name=TCONS_00014910|organism=Clytia hemisphaerica|type=transcript|length=848bp
AGTTTTTTGAAACCGTAAAACTGTgatgttgtttaattttattcTAGAAA
TTCTAGATGCTAACTAAAaccattttctatttttcattttagcaaCAACA
AAAGAGGGATGTTGCATGCTGGTATTAAACGAGAAGCTGAATATCCAATG
CCTTATGGGATGCCGCCACGTCCACCAGCTCCATTAGGATACGGTGGTCA
CTTTGCTTCAGGAAGAGAAATGTATGGTGGACCACGCCCTGGCGGTGCCT
TCAGAGGAGGTTTCAGACCACCACCACCTCGTGGATTGTTTCAAATGTTC
TGAGGCCTACAACACACAAAAGCGCTAAATCAGCGTTTTCCATCAAAGTG
TATAAACAACAAAAACGCTAGCTTAGCGTTTTCTCCTGAACAAGAACATA
AACTTTGTTTTATGAGTGACCGATGGCTACTCGTATCCCCAATGAGCTGA
AGCTCTACTCAAACGATACAAGTGAACACGTCAACAAATGAACGTGTTCT
GCAGAACATCCCGTATTATAATAATTCCAATCGGTTACctcagaccatgt
tcacactCTACGGTTCCGTTACGCtctgaaacgaaatgaagctattctat
tggttaaattcaagttttacgtcacttctaaccaatagaatggttCGGAA
CGAAACGGAACGGTTACATTTGAACATGGTCTCAGATATCTTATCCTAGA
AATCCTTTATGCTGCAGCACTTATATGATATAAGATGATTTTCaagatgt
ttttattttttttatcgctgttttcattttttataacttttaaaaagaCT
TAAATCTTTTGATTGTTGAAATATAAGAAACTTATCACTGAAAATTTT
Run BLAST on NCBI

transcript from alignment at sc0000200:406656..408217-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014910 ID=TCONS_00014910|Name=TCONS_00014910|organism=Clytia hemisphaerica|type=transcript|length=1562bp|location=Sequence derived from alignment at sc0000200:406656..408217- (Clytia hemisphaerica)
AGTTTTTTGAAACCGTAAAACTGTGATGTTGTTTAATTTTATTCTAGAAA
TTCTAGATGCTAACTAAAACCATTTTCTATTTTTCATTTTAGCAACAACA
AAAGAGGGGTAACTTTTTTCTTCATCCTTTGTACTTTTGTTCATAATATC
TATTTTATATACAGTGTCCCAAGAAAATCAGACAAATTTTAACAAAGTAA
AATCCTCAAAACTCGTTATCTAAAGAGTGGGTTTAAAACACTTGAATTTC
CCTGTTCAAGCAATAGATCTTCAATTCCCAGGATGCTTGAATAGGTTTTT
GAGATTGAAATATTTAGTATTCAAGTCATAAAATTTTGCATAAATTATGA
TGATTTTACTTTATATTTGTCCGCTTTTTAAGATTTGTGCATTTAAGGGC
TTTAAGATTTCTACTTTAACTACATTGTACAATATTCCTTATGTTTAGAT
ATAAAGTATCAGGAAACCACCAATGTCAATTTTTGAAAATCTGTAAAGTA
TCTTGATGTAATTATGGTGTTTGCATAATTAAAAATTACCTTTAGAATTA
ATTTTTTTAACTCAGATGTTGCATGCTGGTATTAAACGAGAAGCTGAATA
TCCAATGCCTTATGGGATGCCGCCACGTCCACCAGCTCCATTAGGATACG
GTGGTCACTTTGCTTCAGGAAGAGAAATGTATGGTGGACCACGCCCTGGC
GGTGCCTTCAGAGGAGGTTTCAGACCACCACCACCTCGTGGATTGTTTCA
AATGTTCTGAGGTAAAGTCCATGTAGAGCGTTCAGGTATTTTGATTTACT
CTCTTTTACTTTTCCTCTTCATTTTCATACCACCTACTGCAATACTACAC
TTCCTAATCCGTGACCTGTATTGTACTTTTTGAAAAATCTTTTAGTGTTT
ACTATCTACCATTTTTCCAATTTTTCTACTTTAAACACCTTCCTCCGTCT
CTTTCTTTCAGGCCTACAACACGCAAAAGCGCTGNCTTTAAACACCTTCC
TCCGTCTCTTTCTTTCAGGCCTACAACACACAAAAGCGCTAAATCAGCGT
TTTCCATCAAAGTGTATAAACAACAAAAACGCTAGCTTAGCGTTTTCTCC
TGAACAAGAACATAAACTTTGTTTTATGAGTGACCGATGGCTACTCGTAT
CCCCAATGAGCTGAAGCTCTACTCAAACGATACAAGTGAACACGTCAACA
AATGAACGTGTTCTGCAGAACATCCCGTATTATAATAATTCCAATCGGTT
ACCTCAGACCATGTTCACACTCTACGGTTCCGTTACGCTCTGAAACGAAA
TGAAGCTATTCTATTGGTTAAATTCAAGTTTTACGTCACTTCTAACCAAT
AGAATGGTTCGGAACGAAACGGAACGGTTACATTTGAACATGGTCTCAGA
TATCTTATCCTAGAAATCCTTTATGCTGCAGCACTTATATGATATAAGAT
GATTTTCAAGATGTTTTTATTTTTTTTATCGCTGTTTTCATTTTTTATAA
CTTTTAAAAAGACTTAAATCTTTTGATTGTTGAAATATAAGAAACTTATC
ACTGAAAATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008335XLOC_008335Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014910-exon-sc0000200-1575043694:408110..408217TCONS_00014910-exon-sc0000200-1575043694:408110..408217Clytia hemisphaericaexon
TCONS_00014910-exon-sc0000200-1575043694:407457..407652TCONS_00014910-exon-sc0000200-1575043694:407457..407652Clytia hemisphaericaexon
TCONS_00014910-exon-sc0000200-1575043694:406656..407199TCONS_00014910-exon-sc0000200-1575043694:406656..407199Clytia hemisphaericaexon
TCONS_00014910-exon-sc0000200-1510915933:408110..408217TCONS_00014910-exon-sc0000200-1510915933:408110..408217Clytia hemisphaericaexon
TCONS_00014910-exon-sc0000200-1510915933:407457..407652TCONS_00014910-exon-sc0000200-1510915933:407457..407652Clytia hemisphaericaexon
TCONS_00014910-exon-sc0000200-1510915933:406656..407199TCONS_00014910-exon-sc0000200-1510915933:406656..407199Clytia hemisphaericaexon
TCONS_00014910-exon-sc0000200-1491911889:408110..408217TCONS_00014910-exon-sc0000200-1491911889:408110..408217Clytia hemisphaericaexon
TCONS_00014910-exon-sc0000200-1491911889:407457..407652TCONS_00014910-exon-sc0000200-1491911889:407457..407652Clytia hemisphaericaexon
TCONS_00014910-exon-sc0000200-1491911889:406656..407199TCONS_00014910-exon-sc0000200-1491911889:406656..407199Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000200supercontigsc0000200:406656..408217 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.99498	7.36747	3.854	4.10545	198.274	154.533	70.0331	71.4431	32.453	38.4399	22.6164	19.906	15.1178	16.8087	25.2	34.0212	48.7025	41.5503	8.32179	12.8983	28.5872	29.6678	24.0249	19.1803	26.8838	33.4632	18.6823	19.0327	19.1682	18.3104
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014910 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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