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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014929 ID=TCONS_00014929|Name=TCONS_00014929|organism=Clytia hemisphaerica|type=transcript|length=2842bpRun BLAST on NCBI protein sequence of TCONS_00014929-protein >TCONS_00014929-protein ID=TCONS_00014929-protein|Name=TCONS_00014929-protein|organism=Clytia hemisphaerica|type=polypeptide|length=374bp MSESIQRLGLALGELKVDKSKMVLNFQQQNIRPKPPSRHKQNPDLSHNVVRun BLAST on NCBI transcript from alignment at sc0000201:124057..152508+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014929 ID=TCONS_00014929|Name=TCONS_00014929|organism=Clytia hemisphaerica|type=transcript|length=28452bp|location=Sequence derived from alignment at sc0000201:124057..152508+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000201:124057..152508+ >TCONS_00014929 ID=TCONS_00014929|Name=TCONS_00014929|organism=Clytia hemisphaerica|type=CDS|length=13500bp|location=Sequence derived from alignment at sc0000201:124057..152508+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014929 vs. Swiss-Prot (Human)
Match: MP2K4 (Dual specificity mitogen-activated protein kinase kinase 4 OS=Homo sapiens GN=MAP2K4 PE=1 SV=1) HSP 1 Score: 417.542 bits (1072), Expect = 4.213e-136 Identity = 193/303 (63.70%), Postives = 245/303 (80.86%), Query Frame = 3
Query: 219 QNPDLSHNVVHLLQKSSGKLKIDAEE-YEYSAEDLSDLGEIGRGNFGTVNKMKHEESQKVMAVKRIRASIDEKAQKQLLKELEIVMKTSDCPFIVNFYGAIFKEGDCWICMELMTSSLEKTYKAVHKILQQKIPEDILGKIAFCVIKALDYLKTNLNIIHRDVKPSNVLLDVEGRIKLCDFGISGQLVDSIAQTRDAGCQPYMAPERIDPFAERVGYDVSSDVWSLGLTLIEVATGKFPYPMWSTLFDQLNQVVRGDPPQLKNTPDQTFTQDCLHSVNSCMIKDCKFRPKYTELLQHSFIQKY 1124
QNP + H ++ SSGKLKI E+ ++++AEDL DLGEIGRG +G+VNKM H+ S ++MAVKRIR+++DEK QKQLL +L++VM++SDCP+IV FYGA+F+EGDCWICMELM++S +K YK V+ +L IPE+ILGKI +KAL++LK NL IIHRD+KPSN+LLD G IKLCDFGISGQLVDSIA+TRDAGC+PYMAPERIDP A R GYDV SDVWSLG+TL E+ATG+FPYP W+++FDQL QVV+GDPPQL N+ ++ F+ ++ VN C+ KD RPKY ELL+H FI Y
Sbjct: 69 QNPHIERLRTHSIE-SSGKLKISPEQHWDFTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLKHPFILMY 370 The following BLAST results are available for this feature:
BLAST of TCONS_00014929 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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