TCONS_00014949 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014949
Unique NameTCONS_00014949
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length544

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014949 ID=TCONS_00014949|Name=TCONS_00014949|organism=Clytia hemisphaerica|type=transcript|length=544bp
ATTCTTTGATGTTAAATTAATATTTCTTCTTTTCAGCTTGAAAACCAACT
GCGTGGACAACTCCTGACCAGTTGTCATCTCTGTCTTACCCATCATTATG
GCTGATTTATTCAGatTTCAAGACCAAAGGGTTACTAAACCCCTACTGAA
GGGTTAAACCCTTCAACCAACCTACCTCAGATTACTTGGCATCACCAGAT
TACCTGGAACAACCGCAGATTACTCGATTACTCGGAATTACTAGATTACT
CGGCTAATCAAAACTTGCAACATTATCAGATTGCTCAGCTTATGAAATCG
ACTCAGCTTACTTAACTTACTCTTCATATTCAGCTCACTTAATATTTATC
TACTAGTATCGAaatttaaataaagaaatttgaattaaaaaccaaacttt
actttacattggaaaaacaaactttattttatatataataggaataacaa
actttattttacatAGGAAAAACAAACTGTATTTGATCTGGGGTTTTTAG
AGACAATGGgagtgtttgaaattttttctttgtttataaaattt
Run BLAST on NCBI

transcript from alignment at sc0000201:394384..395586+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014949 ID=TCONS_00014949|Name=TCONS_00014949|organism=Clytia hemisphaerica|type=transcript|length=1203bp|location=Sequence derived from alignment at sc0000201:394384..395586+ (Clytia hemisphaerica)
ATTCTTTGATGTTAAATTAATATTTCTTCTTTTCAGCTTGAAAACCAACT
GCGTGGACAACTCCTGACCAGTTGTCATCTCTGTCTTACCCATCATTATG
GCTGATTTATTCAGGTTGGTACTTACTGAGATAGAGGGGGAATCGAAAGC
ATAGGTCTAACTTGacatcatttttcattgcttgcAGCAGTAATAGCGAA
GCTGGATGATGAACAAGAACTCCTTAGGAAACTgcatctttgtcttttct
attgttaactgttcataatagaaaccATCTCTGTACCCTTTANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTTTCTCgtaaatgaaa
tttatttttatcagcATGTGCCATGAATTTGACTggctttttgtgatttt
tcttgaataactttgcatgtaaatattttctttcactaATTAATTTCCAA
TTGATATGATGACGAATAGTATACATCTTTCTAAActccttttttattta
tttttacagatTTCAAGACCAAAGGGTTACTAAACCCCTACTGAAGGGTT
AAACCCTTCAACCAACCTACCTCAGATTACTTGGCATCACCAGATTACCT
GGAACAACCGCAGATTACTCGGCATTACTAGATTACTCGGCATTACTAGA
TTACTCGGCATTACTAGATTGCATGGAATTACTAGATTACTCGGAATTAC
TAGATTACTCGGCTAATCAAAACTTGCAACATTATCAGATTGCTCAGCTT
ATGAAATCGACTCAGCTTACTTAACTTACTCTTCATATTCAGCTCACTTA
ATATTTATCTACTAGTATCGAaatttaaataaagaaatttgaattaaaaa
ccaaactttactttacattggaaaaacaaactttattttatatataatag
gaataacaaactttattttacatAGGAAAAACAAACTGTATTTGATCTGG
GGTTTTTAGAGACAATGGgagtgtttgaaattttttctttgtttataaaa
ttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008358XLOC_008358Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014949-exon-sc0000201-1491911889:394384..394497TCONS_00014949-exon-sc0000201-1491911889:394384..394497Clytia hemisphaericaexon
TCONS_00014949-exon-sc0000201-1510915933:394384..394497TCONS_00014949-exon-sc0000201-1510915933:394384..394497Clytia hemisphaericaexon
TCONS_00014949-exon-sc0000201-1575043694:394384..394497TCONS_00014949-exon-sc0000201-1575043694:394384..394497Clytia hemisphaericaexon
TCONS_00014949-exon-sc0000201-1491911889:395093..395204TCONS_00014949-exon-sc0000201-1491911889:395093..395204Clytia hemisphaericaexon
TCONS_00014949-exon-sc0000201-1510915933:395093..395204TCONS_00014949-exon-sc0000201-1510915933:395093..395204Clytia hemisphaericaexon
TCONS_00014949-exon-sc0000201-1575043694:395093..395204TCONS_00014949-exon-sc0000201-1575043694:395093..395204Clytia hemisphaericaexon
TCONS_00014949-exon-sc0000201-1491911889:395269..395586TCONS_00014949-exon-sc0000201-1491911889:395269..395586Clytia hemisphaericaexon
TCONS_00014949-exon-sc0000201-1510915933:395269..395586TCONS_00014949-exon-sc0000201-1510915933:395269..395586Clytia hemisphaericaexon
TCONS_00014949-exon-sc0000201-1575043694:395269..395586TCONS_00014949-exon-sc0000201-1575043694:395269..395586Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000201supercontigsc0000201:394384..395586 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.03726	1.63183	0.511385	1.10975	6.60521	7.54338	2.90677	4.52864	5.08012	4.70245	3.67966	4.73206	4.65778	3.84671	4.04188	4.5979	5.17389	5.82627	6.99109	4.84919	7.59612	7.06366	4.42248	5.79331	2.83597	2.56774	5.72977	5.64915	8.01109	9.22284
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014949 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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