TCONS_00014990 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014990
Unique NameTCONS_00014990
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length543

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014990 ID=TCONS_00014990|Name=TCONS_00014990|organism=Clytia hemisphaerica|type=transcript|length=543bp
AGTGTTGGTTAAAGTCCTACCCTCTGAGGTCAATACAACCGATATCTATG
GAAAACATCGAAACGTTATTGGCAGTCACGTACCGAGAGTTTGAAGAAGG
AATAGAGCGGTTAACTGAACTGCATCAAACTAGGGAGAAGGTGAAAGAGG
AGTTGCATAGGTTGCAAGCTAAAGagcatgaaatgaaaaaaatggagAAG
ACTGAAATGACAAATGCAATCAAACTCGCCAACATGTTGAACATGCGTGA
ACAATCAGTGATGGTGGAGGGTCTACGTGACGAGACTCTGTGGAGCCCTG
GTAGTAAACATACTAGAGAAAGCTTAGTAAATGTATTCCTTGGTACTGGG
GAGAGAGAGGAAAAGGACGACTGCTTCAAAGAACTTCAAAGACTGATTGA
AAACGATCGCAAACACAAAGAAAGTTTGGTGGAGCATCTCAAAGGAGAGA
GGGTGCGCTTTTGTCACGACAAAGACATCGAAAAATACAACCTGTATGAA
ATAGAATACAAAATCACCAAAGAAACAGAAAAATGTGAAGTTC
Run BLAST on NCBI

protein sequence of TCONS_00014990-protein

>TCONS_00014990-protein ID=TCONS_00014990-protein|Name=TCONS_00014990-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
CWLKSYPLRSIQPISMENIETLLAVTYREFEEGIERLTELHQTREKVKEE
LHRLQAKEHEMKKMEKTEMTNAIKLANMLNMREQSVMVEGLRDETLWSPG
SKHTRESLVNVFLGTGEREEKDDCFKELQRLIENDRKHKESLVEHLKGER
VRFCHDKDIEKYNLYEIEYKITKETEKCEV
Run BLAST on NCBI

transcript from alignment at sc0000201:200835..201377

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014990 ID=TCONS_00014990|Name=TCONS_00014990|organism=Clytia hemisphaerica|type=transcript|length=543bp|location=Sequence derived from alignment at sc0000201:200835..201377 (Clytia hemisphaerica)
GAACTTCACATTTTTCTGTTTCTTTGGTGATTTTGTATTCTATTTCATAC
AGGTTGTATTTTTCGATGTCTTTGTCGTGACAAAAGCGCACCCTCTCTCC
TTTGAGATGCTCCACCAAACTTTCTTTGTGTTTGCGATCGTTTTCAATCA
GTCTTTGAAGTTCTTTGAAGCAGTCGTCCTTTTCCTCTCTCTCCCCAGTA
CCAAGGAATACATTTACTAAGCTTTCTCTAGTATGTTTACTACCAGGGCT
CCACAGAGTCTCGTCACGTAGACCCTCCACCATCACTGATTGTTCACGCA
TGTTCAACATGTTGGCGAGTTTGATTGCATTTGTCATTTCAGTCTTctcc
atttttttcatttcatgctCTTTAGCTTGCAACCTATGCAACTCCTCTTT
CACCTTCTCCCTAGTTTGATGCAGTTCAGTTAACCGCTCTATTCCTTCTT
CAAACTCTCGGTACGTGACTGCCAATAACGTTTCGATGTTTTCCATAGAT
ATCGGTTGTATTGACCTCAGAGGGTAGGACTTTAACCAACACT

Coding sequence (CDS) from alignment at sc0000201:200835..201377

>TCONS_00014990 ID=TCONS_00014990|Name=TCONS_00014990|organism=Clytia hemisphaerica|type=CDS|length=540bp|location=Sequence derived from alignment at sc0000201:200835..201377 (Clytia hemisphaerica)
AACTTCACATTTTTCTGTTTCTTTGGTGATTTTGTATTCTATTTCATACA
GGTTGTATTTTTCGATGTCTTTGTCGTGACAAAAGCGCACCCTCTCTCCT
TTGAGATGCTCCACCAAACTTTCTTTGTGTTTGCGATCGTTTTCAATCAG
TCTTTGAAGTTCTTTGAAGCAGTCGTCCTTTTCCTCTCTCTCCCCAGTAC
CAAGGAATACATTTACTAAGCTTTCTCTAGTATGTTTACTACCAGGGCTC
CACAGAGTCTCGTCACGTAGACCCTCCACCATCACTGATTGTTCACGCAT
GTTCAACATGTTGGCGAGTTTGATTGCATTTGTCATTTCAGTCTTctcca
tttttttcatttcatgctCTTTAGCTTGCAACCTATGCAACTCCTCTTTC
ACCTTCTCCCTAGTTTGATGCAGTTCAGTTAACCGCTCTATTCCTTCTTC
AAACTCTCGGTACGTGACTGCCAATAACGTTTCGATGTTTTCCATAGATA
TCGGTTGTATTGACCTCAGAGGGTAGGACTTTAACCAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008383XLOC_008383Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014990-proteinTCONS_00014990-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014990-exon-sc0000201-1491911889:200835..201377TCONS_00014990-exon-sc0000201-1491911889:200835..201377Clytia hemisphaericaexon
TCONS_00014990-exon-sc0000201-1510915933:200835..201377TCONS_00014990-exon-sc0000201-1510915933:200835..201377Clytia hemisphaericaexon
TCONS_00014990-exon-sc0000201-1575043694:200835..201377TCONS_00014990-exon-sc0000201-1575043694:200835..201377Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000201supercontigsc0000201:200835..201377 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.212442	0.207164	0	0.470656	0.286489	0.679163	0.273127	0.383548	0.0895102	1.55222	1.29139	0.353712	0.423865	0.440188	0.603157	0.841463	0.398698	0.245191	1.35498	0.354472	0.308101	0.300562	0.730744	0.332176	1.25449	1.32317	1.7478	0.621766	0.117897	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014990 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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