|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014992 ID=TCONS_00014992|Name=TCONS_00014992|organism=Clytia hemisphaerica|type=transcript|length=732bp
GTTGAAAGATTGGAGCACacgggaaaatgtttttgaacttcTAGAAGATT
CTTTCTTAGCCGAAGTGAAGGAGGAATATCGAATCCCAGCAACCCTGGTC
AACGACGAGTCAGAGGACTTTGAAAATCCTAAATCTATCGTCACGTTTGA
ATATGATATTCAAAATAAGTGCTTCAAGTTCAAGGGATACCAAACGAGAA
GGTCCATTTTCTTTAAACAGATGTTTCAAACATTGGATAGAAGTCAATTC
ATGATTgtccaattttctgaaaaaacttttgatgaatcAGTCCTCAATCG
CGACAGATACATTGAATCGGTATTGAGAAAAGGAGTACGATTCAAGGGGC
AGGAATACAATATTTTGGGTTGCAGCAATTCTCAAgtacaaaagaaatct
ttcgtTTTCATGCAACGGTCAAAAGAACAATGTAAAACTGAAATAAAGAA
GTTTATACCGCAACTCCATAATATCGAGCTAGTTGCGAAACGCGTCAAAT
ATGCAGGACTTTTATTCACACCTTGTCAATATATGTTACATTTACCAACA
TCGTACGAGGTTTGCGAAGGTGAAAATTACGAACGAGGACGTTATGATTT
TGCTGATGGCTGTGGCACTATTTCTTTCAAACTTGCAAAAGAAATTATTG
TTTTAAACGAGAAGTTACAGATGGATTGGGGCGAGGAAATACCTTCTGTT
TGGCAGATACGATATTGTGGAAGAGTAGGGAA Run BLAST on NCBI protein sequence of TCONS_00014992-protein >TCONS_00014992-protein ID=TCONS_00014992-protein|Name=TCONS_00014992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=243bp
LKDWSTRENVFELLEDSFLAEVKEEYRIPATLVNDESEDFENPKSIVTFE
YDIQNKCFKFKGYQTRRSIFFKQMFQTLDRSQFMIVQFSEKTFDESVLNR
DRYIESVLRKGVRFKGQEYNILGCSNSQVQKKSFVFMQRSKEQCKTEIKK
FIPQLHNIELVAKRVKYAGLLFTPCQYMLHLPTSYEVCEGENYERGRYDF
ADGCGTISFKLAKEIIVLNEKLQMDWGEEIPSVWQIRYCGRVG Run BLAST on NCBI transcript from alignment at sc0000201:203530..204261 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014992 ID=TCONS_00014992|Name=TCONS_00014992|organism=Clytia hemisphaerica|type=transcript|length=732bp|location=Sequence derived from alignment at sc0000201:203530..204261 (Clytia hemisphaerica)
TTCCCTACTCTTCCACAATATCGTATCTGCCAAACAGAAGGTATTTCCTC
GCCCCAATCCATCTGTAACTTCTCGTTTAAAACAATAATTTCTTTTGCAA
GTTTGAAAGAAATAGTGCCACAGCCATCAGCAAAATCATAACGTCCTCGT
TCGTAATTTTCACCTTCGCAAACCTCGTACGATGTTGGTAAATGTAACAT
ATATTGACAAGGTGTGAATAAAAGTCCTGCATATTTGACGCGTTTCGCAA
CTAGCTCGATATTATGGAGTTGCGGTATAAACTTCTTTATTTCAGTTTTA
CATTGTTCTTTTGACCGTTGCATGAAAacgaaagatttcttttgtacTTG
AGAATTGCTGCAACCCAAAATATTGTATTCCTGCCCCTTGAATCGTACTC
CTTTTCTCAATACCGATTCAATGTATCTGTCGCGATTGAGGACTgattca
tcaaaagttttttcagaaaattggacAATCATGAATTGACTTCTATCCAA
TGTTTGAAACATCTGTTTAAAGAAAATGGACCTTCTCGTTTGGTATCCCT
TGAACTTGAAGCACTTATTTTGAATATCATATTCAAACGTGACGATAGAT
TTAGGATTTTCAAAGTCCTCTGACTCGTCGTTGACCAGGGTTGCTGGGAT
TCGATATTCCTCCTTCACTTCGGCTAAGAAAGAATCTTCTAgaagttcaa
aaacattttcccgtGTGCTCCAATCTTTCAAC Coding sequence (CDS) from alignment at sc0000201:203530..204261 >TCONS_00014992 ID=TCONS_00014992|Name=TCONS_00014992|organism=Clytia hemisphaerica|type=CDS|length=729bp|location=Sequence derived from alignment at sc0000201:203530..204261 (Clytia hemisphaerica)
CCCTACTCTTCCACAATATCGTATCTGCCAAACAGAAGGTATTTCCTCGC
CCCAATCCATCTGTAACTTCTCGTTTAAAACAATAATTTCTTTTGCAAGT
TTGAAAGAAATAGTGCCACAGCCATCAGCAAAATCATAACGTCCTCGTTC
GTAATTTTCACCTTCGCAAACCTCGTACGATGTTGGTAAATGTAACATAT
ATTGACAAGGTGTGAATAAAAGTCCTGCATATTTGACGCGTTTCGCAACT
AGCTCGATATTATGGAGTTGCGGTATAAACTTCTTTATTTCAGTTTTACA
TTGTTCTTTTGACCGTTGCATGAAAacgaaagatttcttttgtacTTGAG
AATTGCTGCAACCCAAAATATTGTATTCCTGCCCCTTGAATCGTACTCCT
TTTCTCAATACCGATTCAATGTATCTGTCGCGATTGAGGACTgattcatc
aaaagttttttcagaaaattggacAATCATGAATTGACTTCTATCCAATG
TTTGAAACATCTGTTTAAAGAAAATGGACCTTCTCGTTTGGTATCCCTTG
AACTTGAAGCACTTATTTTGAATATCATATTCAAACGTGACGATAGATTT
AGGATTTTCAAAGTCCTCTGACTCGTCGTTGACCAGGGTTGCTGGGATTC
GATATTCCTCCTTCACTTCGGCTAAGAAAGAATCTTCTAgaagttcaaaa
acattttcccgtGTGCTCCAATCTTTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014992-exon-sc0000201-1491911889:203530..204261 | TCONS_00014992-exon-sc0000201-1491911889:203530..204261 | Clytia hemisphaerica | exon |
| TCONS_00014992-exon-sc0000201-1510915933:203530..204261 | TCONS_00014992-exon-sc0000201-1510915933:203530..204261 | Clytia hemisphaerica | exon |
| TCONS_00014992-exon-sc0000201-1575043694:203530..204261 | TCONS_00014992-exon-sc0000201-1575043694:203530..204261 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000201 | supercontig | sc0000201:203530..204261 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007855 | RNA-dep_RNA_pol_euk-typ |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003968 | RNA-directed 5'-3' RNA polymerase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003968 |
RNA-directed 5'-3' RNA polymerase activity |
Blast
The following BLAST results are available for this feature:
|
