TCONS_00015009 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015009
Unique NameTCONS_00015009
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length279

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015009 ID=TCONS_00015009|Name=TCONS_00015009|organism=Clytia hemisphaerica|type=transcript|length=279bp
catttttgctACCATTTTGCTAGATCCAAACCATTTCTTGTACATATATT
ATTTCCAAACCATTTCAAGTACATttatgatgacatcatcaatattttta
tataaatataGGATCACTTCTCACTCAGTTCATTCACTCAtaagtccttg
aagagtcaatACGGGGTCAATACATGATGTTGGATCAAAACTTCAAATTT
ATTTAAataataactcaattttcaatTGTCAATTCAATTTTGCACATTCA
GACTTTGTCTACGTTTGGACATAGTCATT
Run BLAST on NCBI

transcript from alignment at sc0000201:401205..401483

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015009 ID=TCONS_00015009|Name=TCONS_00015009|organism=Clytia hemisphaerica|type=transcript|length=279bp|location=Sequence derived from alignment at sc0000201:401205..401483 (Clytia hemisphaerica)
AATGACTATGTCCAAACGTAGACAAAGTCTGAATGTGCAAAATTGAATTG
ACAattgaaaattgagttattatTTAAATAAATTTGAAGTTTTGATCCAA
CATCATGTATTGACCCCGTattgactcttcaaggacttaTGAGTGAATGA
ACTGAGTGAGAAGTGATCCtatatttatataaaaatattgatgatgtcat
cataaATGTACTTGAAATGGTTTGGAAATAATATATGTACAAGAAATGGT
TTGGATCTAGCAAAATGGTagcaaaaatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008402XLOC_008402Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015009-exon-sc0000201-1491911889:401205..401483TCONS_00015009-exon-sc0000201-1491911889:401205..401483Clytia hemisphaericaexon
TCONS_00015009-exon-sc0000201-1510915933:401205..401483TCONS_00015009-exon-sc0000201-1510915933:401205..401483Clytia hemisphaericaexon
TCONS_00015009-exon-sc0000201-1575043694:401205..401483TCONS_00015009-exon-sc0000201-1575043694:401205..401483Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000201supercontigsc0000201:401205..401483 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.00366	0	2.26864	1.66463	1.35102	1.06759	0.644004	3.61745	1.26633	2.09141	0	2.66885	1.66571	1.72986	0.284435	1.83146	1.50414	2.31254	5.85731	7.86019	2.42156	1.41738	0	3.13294	1.07562	0.959963	5.48865	0.733027	2.21272	1.66946
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015009 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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