TCONS_00015045 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015045
Unique NameTCONS_00015045
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1525

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015045 ID=TCONS_00015045|Name=TCONS_00015045|organism=Clytia hemisphaerica|type=transcript|length=1525bp
GTTAACTGAAGGAtataattttatgaaaaatggcTTCAGAGACCTTGGCT
TCGACTGACGAAACTATAAATATTTTGGCCACAACAAACCAAGACCATTA
TGAAGCTGAAATTGCTATTAGAACTTTGAATAATTCAAAAACTGTTTCAT
TTCTGGTAAAAGACTACGAGCCTTCTGATATTTTATTTCCAACTCTGATG
CAAAGATATCTAACAGGAAGTCGAGCTGAATTTCTTTACACAGACGAATC
AGATTACGATTATCTCTATGAGATAGGTCCAGGAGTTGTCCGTGATTTTC
GTGGGAAGCGAAAAGATGATCCTTCAGGATATTTTTATTGGCAACCAACA
GAAAATCCTGGATTTTATACCATTGAAGACAAAAATGGCAAATATTTGTA
TTCGCAAATTATTCAACAGAAGTTAGCACCTTTGTTTTTGACGGGCCAAG
ATCTTCATAGCAAGAATCGATATGATTTTGAGGATACATCAAAATTGAGA
GCTGCTATCAGTTATTCCAACAAGGATTTTGTCATTGGTTTGCGTTTAGC
TGAATGGCCTAAAGAACTCATCCAAGGTTTTCCCATGAAAGAAAGTGTGG
AACAACTCCAgacgattcctttgtttttgatcGCTAAAAGCTGTCCTGGA
AGCTCTCTTGCTAAGCTGGAATGGAGGATTTCATTTTCGCTGGTCGAGTT
AGAAATCCTAATCAATTTACCATATTACCAAAGGAAAGCTTTCCTTCATT
TAAAGCATCATCTAGAAAAGGTTGAGGAGATTCCatcatattttttgaaa
acaacatTGTTAACAGTATCTGCATATTTTCAGCAGGAGTATCCCCAGGA
AGAATggaatacaaaaatattttataaagaaTTAACTGATAACCTAGAAA
GGGCCATTCTTAAGAAAAACATACCTAACTTTTTTGTACCTgaacaaaac
ttgtttttactaGAGGAAGAAGATTTGAGTTATGGAACGAAAACGAAATC
TTGGAACGATATCTATGCTCAGATAATAAATTCAAAGTCGATTGACTTTG
GATTTCCTGTTGCTGGAAACAACATCTACTTGAATGATAATGAAGCTCTC
CTTGGTTGCCTGGCCGAAACATATATACAAATTATACGAATAGTTTCTCA
AATTGTTGATTGGAAAAACAGTGTTAAACTAATTTGTGACACACTTCCAC
TAACATTTACTAACCAGATTCGAGATCATTTTCAAAACTTGGTGCGAATC
AACCTTTATTTTGATGATACACATATAAGTGAAAATGAATTCGCAGCATA
TATTACAGATTTAACGGTGATGAATTTAGGAGATTGGGAACTGCATGACA
TATGCGCAATGTGTTGCGGGAAGGGTTACTTTTCCCATAATGGTCATGTT
GCCCAAACCACAAATCAAATCAATGAGAAATACAAAACTCTAATTAATTG
GATCGATCGAATTATTACTCGAATcaatgaagacAttgtgaaaaataaaa
cttcatcTATACTCACAAAAGAAAG
Run BLAST on NCBI

protein sequence of TCONS_00015045-protein

>TCONS_00015045-protein ID=TCONS_00015045-protein|Name=TCONS_00015045-protein|organism=Clytia hemisphaerica|type=polypeptide|length=498bp
MASETLASTDETINILATTNQDHYEAEIAIRTLNNSKTVSFLVKDYEPSD
ILFPTLMQRYLTGSRAEFLYTDESDYDYLYEIGPGVVRDFRGKRKDDPSG
YFYWQPTENPGFYTIEDKNGKYLYSQIIQQKLAPLFLTGQDLHSKNRYDF
EDTSKLRAAISYSNKDFVIGLRLAEWPKELIQGFPMKESVEQLQTIPLFL
IAKSCPGSSLAKLEWRISFSLVELEILINLPYYQRKAFLHLKHHLEKVEE
IPSYFLKTTLLTVSAYFQQEYPQEEWNTKIFYKELTDNLERAILKKNIPN
FFVPEQNLFLLEEEDLSYGTKTKSWNDIYAQIINSKSIDFGFPVAGNNIY
LNDNEALLGCLAETYIQIIRIVSQIVDWKNSVKLICDTLPLTFTNQIRDH
FQNLVRINLYFDDTHISENEFAAYITDLTVMNLGDWELHDICAMCCGKGY
FSHNGHVAQTTNQINEKYKTLINWIDRIITRINEDIVKNKTSSILTKE
Run BLAST on NCBI

transcript from alignment at sc0000203:91162..96512-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015045 ID=TCONS_00015045|Name=TCONS_00015045|organism=Clytia hemisphaerica|type=transcript|length=5351bp|location=Sequence derived from alignment at sc0000203:91162..96512- (Clytia hemisphaerica)
GTTAACTGAAGGATATAATTTTATGAAAAATGGCTTCAGAGACCTTGGCT
TCGACTGACGAAACTATAAATATTTTGGCCACAACAAACCAAGACCATTA
TGAAGCTGAAATTGCTATTAGAACTTTGAATAATTCAAAAACTGTTTCAT
TTCTGGTAAAAGACTACGAGCCTTCTGATATTTTATTTCCAACTCTGATG
CAAAGATATCTAACAGGAAGTCGAGCTGAATTTCTTTACACAGACGAATC
AGATTACGATTATCTCTATGAGATAGGTCCAGGAGTTGTCCGTGATTTTC
GTGGGAAGCGAAAAGATGATCCTTCAGGATATTTTTATTGGCAACCAACA
GAAAATCCTGGATTTTATACCATTGAAGACAAAAATGGCAAATATTTGTA
TTCGCAAATTATTCAACAGAAGTTAGCACCTTTGTTTTTGACGGGCCAAG
ATCTTCATAGCAAGAATCGATATGATTTTGAGGATACATCAAAATTGAGA
GCTGCTATCAGTTATTCCAACAAGGATTTTGTCATTGGTTTGCGTTTAGC
TGAATGGCCTAAAGAACTCATCCAAGGTTTTCCCATGAAAGAAAGTGTGG
AACAACTCCAGACGATTCCTTTGTTTTTGATCGCTAAAAGCTGTCCTGGA
AGCTCTCTTGCTAAGCTGGAATGGAGGATTTCATTTTCGCTGGTCGAGTT
AGAAATCCTAATCAATTTACCATATTACCAAAGGAAAGCTTTCCTTCATT
TAAAGCATCATCTAGAAAAGGTTGAGGAGATTCCATCATATTTTTTGAAA
ACAACATTGTTAACAGTATCTGCATATTTTCAGCAGGAGTATCCCCAGGA
AGAATGGAATACAAAAATATTTTATAAAGAATTAACTGATAACCTAGAAA
GGGCCATTCTTAAGAAAAACATACCTAACTTTTTTGTACCTGAACAAAAC
TTGTTTTTACTAGAGGAAGAAGATTTGAGTTATGGAACGAAAACGAAATC
TTGGAACGATATCTATGCTCAGATAATAAATTCAAAGTCGATTGACTTTG
GATTTCCTGTTGCTGGAAACAACATCTACTTGAATGATAATGAAGCTCTC
CTTGGTTGCCTGGCCGAAACATATATACAAATTATACGAATAGTTTCTCA
AATTGTTGATTGGAAAAACAGTGTTAAACTAATTTGTGACACACTTCCAC
TAACATTTACTAACCAGATTCGAGATCATTTTCAAAACTTGGTGCGAATC
AACCTTTATTTTGATGATACACATATAAGTGAAAATGAATTCGCAGCATA
TATTACAGATTTAACGGTGATGAATTTAGGAGATTGGGAACTGCATGACA
TATGCGCAATGTGTTGCGGGAAGGGTTACTTTTCCCATAATGGTCATGTT
GCCCAAACCACAAATCAAATCAATGAGAAATACAAAACTCTAATTAATTG
GATCGATCGAATTATTACTCGAATCAATGAAGACATTGCATTGGGAAAAA
TAAAAATTCATCTATACTCACAAAAGAAAGCAAAGGATCATTGAAAGAAC
TTTTGAAAACCCCTGGTGAAGCATTGAGAGACTTTCATATAAGTAAAAAT
ATAGGAAAATCATGCAAAGAACTGTTAAAAGTTTGTTATTTTGCGTTCAG
CCTGCTATTTATCATTATAGTAACTATCAATATTTTTTAAAGTTTATCAA
TGATTGACTTCAAAAATCATCAAAAAACAACAAAAAGAGCCCTTTTTAAA
GTCAACCAGGGCAAAGTTTTAAGCTGTATCTTTTGATTGAATGAATCTTT
TTTGAATCTTTTTTCGCATTTATGACGTTCTAAGATAGAAGAGTTTCTGA
TGCACAAATGAAGATTAAAGCATTATTCTACAAAAGTTCATTCTCTTCTT
CATTCTTCATCTTCGTTTTTCCATCCTTTAATTTTTTTCTTTTTTGATAA
TATGCCACTCTGGGTTATCTTTTTAACGAGCACAAAACAGGTTTGAAAAA
ACACTGCAAGCTAATTTGAAATAGACTTTATGTTCGAACAACAGAGGAAA
TATGATAAACTAGCAGTCAATCCCAGGCCGTCGTCACGGACGACTTGTCA
CTTATTCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNCAGCTTTTATAACAGTGACATGACCAAAA
CTGAAATTGGATTTTTCAAGATCCAAACTAACCCTAAACGAAATCAAGAA
TGGAAACGAATCATTTACCGGTATCGACGAAAGGGAGGAAAAGATAAGTT
CAAAATCACATCTACCTGATCTACAACAGTTATCTGTGAATTTCATTTTA
AAGCAGAGGACATTAAAGTCACCCTTGGAACACATAAAAAGGTTTTAAGG
AAAGGAGCAANGATTGGTTTACGTTTAGCTGAATGGCCTAAAGAACTCAT
CCAAGGTTTTCCCATGAAAGAAAGTGTGGAACAACTCCAGACGATTCCTT
TATTTTTGATCGCTAAAAGCTGTCCTGGAAGCTCTCTTGCTAAGCTGGAA
TGGAGGATTTCATTTTCACTGGTCGAGCTAGAAATCCTAATCAATTTACC
ATATCAAAGGAAAGCTTTCCTTCATTTAAAGCATCATCTAGAAAAGGTTG
AGGAGATTCCATCATATTTTTTGAAAACAACATTGTTAACAATATCTGCA
TATTTTCAGCAGGAGTATCCCCAGGAAGAATGGAATACAGAAATGTTTTA
TAAAGAATTAACTGATAACCTAGAAAGGGCCATTCTTAAGAAAAACATAC
CTAACTTTTTTCTACCTGAACAAAATTTGTTTTTACTAGAGGAAGAAGAT
TTGAGTTATGGAACGAAAACGAAATCTTGGGACGATATCTATGCTCAGAT
AATAAATTCAAAGTCGATTGACTTTAGATTTCCTGTTGCTGGAAACAACA
TCGACTTGAATGATAATGACGCTCTACTTGCTTGTTTGGCCGAAACATAT
CTACAAATTATACGAATAATTTCCCAAATTGTTGATTGGAAAAACAGTGT
TAAAGTAATTTGTGACACACTTCCACTAACATTTACTAACCAGATTCGAG
ATCATTTTCAAAACTTGGTCCGAATCAACCTCTATTTTGATGATACACAT
ATAAGTGAAAATGAATTTGCAGCATATATTACAGATTTAACGGTGATGAA
TTTAGGAGATTGGGAACAGTAAGACATATGCGCAATGTGTTGTGGGAAGG
GTTACTTTTCCCATAATGGTCATGTTGCCCAAACCACAAATCAAATCAAT
GAGAAATACAAAACTCTAATTAATTGGATCGATCGAATCATTACTCGAAT
CAATGAAGACATTGTGAAAAATAAAACTTCATCTATACTCACAAAAGAAA
G

Coding sequence (CDS) from alignment at sc0000203:91162..96512-

>TCONS_00015045 ID=TCONS_00015045|Name=TCONS_00015045|organism=Clytia hemisphaerica|type=CDS|length=2988bp|location=Sequence derived from alignment at sc0000203:91162..96512- (Clytia hemisphaerica)
ATTGTGAAAAATAAAACTTCATCTATACTCACAAAAGAAATGGCTTCAGA
GACCTTGGCTTCGACTGACGAAACTATAAATATTTTGGCCACAACAAACC
AAGACCATTATGAAGCTGAAATTGCTATTAGAACTTTGAATAATTCAAAA
ACTGTTTCATTTCTGGTAAAAGACTACGAGCCTTCTGATATTTTATTTCC
AACTCTGATGCAAAGATATCTAACAGGAAGTCGAGCTGAATTTCTTTACA
CAGACGAATCAGATTACGATTATCTCTATGAGATAGGTCCAGGAGTTGTC
CGTGATTTTCGTGGGAAGCGAAAAGATGATCCTTCAGGATATTTTTATTG
GCAACCAACAGAAAATCCTGGATTTTATACCATTGAAGACAAAAATGGCA
AATATTTGTATTCGCAAATTATTCAACAGAAGTTAGCACCTTTGTTTTTG
ACGGGCCAAGATCTTCATAGCAAGAATCGATATGATTTTGAGGATACATC
AAAATTGAGAGCTGCTATCAGTTATTCCAACAAGGATTTTGTCATTGGTT
TGCGTTTAGCTGAATGGCCTAAAGAACTCATCCAAGGTTTTCCCATGAAA
GAAAGTGTGGAACAACTCCAGACGATTCCTTTGTTTTTGATCGCTAAAAG
CTGTCCTGGAAGCTCTCTTGCTAAGCTGGAATGGAGGATTTCATTTTCGC
TGGTCGAGTTAGAAATCCTAATCAATTTACCATATTACCAAAGGAAAGCT
TTCCTTCATTTAAAGCATCATCTAGAAAAGGTTGAGGAGATTCCATCATA
TTTTTTGAAAACAACATTGTTAACAGTATCTGCATATTTTCAGCAGGAGT
ATCCCCAGGAAGAATGGAATACAAAAATATTTTATAAAGAATTAACTGAT
AACCTAGAAAGGGCCATTCTTAAGAAAAACATACCTAACTTTTTTGTACC
TGAACAAAACTTGTTTTTACTAGAGGAAGAAGATTTGAGTTATGGAACGA
AAACGAAATCTTGGAACGATATCTATGCTCAGATAATAAATTCAAAGTCG
ATTGACTTTGGATTTCCTGTTGCTGGAAACAACATCTACTTGAATGATAA
TGAAGCTCTCCTTGGTTGCCTGGCCGAAACATATATACAAATTATACGAA
TAGTTTCTCAAATTGTTGATTGGAAAAACAGTGTTAAACTAATTTGTGAC
ACACTTCCACTAACATTTACTAACCAGATTCGAGATCATTTTCAAAACTT
GGTGCGAATCAACCTTTATTTTGATGATACACATATAAGTGAAAATGAAT
TCGCAGCATATATTACAGATTTAACGGTGATGAATTTAGGAGATTGGGAA
CTGCATGACATATGCGCAATGTGTTGCGGGAAGGGTTACTTTTCCCATAA
TGGTCATGTTGCCCAAACCACAAATCAAATCAATGAGAAATACAAAACTC
TAATTAATTGGATCGATCGAATTATTACTCGAATCAATGAAGACATTGTG
AAAAATAAAACTTCATCTATACTCACAAAAGAAATGGCTTCAGAGACCTT
GGCTTCGACTGACGAAACTATAAATATTTTGGCCACAACAAACCAAGACC
ATTATGAAGCTGAAATTGCTATTAGAACTTTGAATAATTCAAAAACTGTT
TCATTTCTGGTAAAAGACTACGAGCCTTCTGATATTTTATTTCCAACTCT
GATGCAAAGATATCTAACAGGAAGTCGAGCTGAATTTCTTTACACAGACG
AATCAGATTACGATTATCTCTATGAGATAGGTCCAGGAGTTGTCCGTGAT
TTTCGTGGGAAGCGAAAAGATGATCCTTCAGGATATTTTTATTGGCAACC
AACAGAAAATCCTGGATTTTATACCATTGAAGACAAAAATGGCAAATATT
TGTATTCGCAAATTATTCAACAGAAGTTAGCACCTTTGTTTTTGACGGGC
CAAGATCTTCATAGCAAGAATCGATATGATTTTGAGGATACATCAAAATT
GAGAGCTGCTATCAGTTATTCCAACAAGGATTTTGTCATTGGTTTGCGTT
TAGCTGAATGGCCTAAAGAACTCATCCAAGGTTTTCCCATGAAAGAAAGT
GTGGAACAACTCCAGACGATTCCTTTGTTTTTGATCGCTAAAAGCTGTCC
TGGAAGCTCTCTTGCTAAGCTGGAATGGAGGATTTCATTTTCGCTGGTCG
AGTTAGAAATCCTAATCAATTTACCATATTACCAAAGGAAAGCTTTCCTT
CATTTAAAGCATCATCTAGAAAAGGTTGAGGAGATTCCATCATATTTTTT
GAAAACAACATTGTTAACAGTATCTGCATATTTTCAGCAGGAGTATCCCC
AGGAAGAATGGAATACAAAAATATTTTATAAAGAATTAACTGATAACCTA
GAAAGGGCCATTCTTAAGAAAAACATACCTAACTTTTTTGTACCTGAACA
AAACTTGTTTTTACTAGAGGAAGAAGATTTGAGTTATGGAACGAAAACGA
AATCTTGGAACGATATCTATGCTCAGATAATAAATTCAAAGTCGATTGAC
TTTGGATTTCCTGTTGCTGGAAACAACATCTACTTGAATGATAATGAAGC
TCTCCTTGGTTGCCTGGCCGAAACATATATACAAATTATACGAATAGTTT
CTCAAATTGTTGATTGGAAAAACAGTGTTAAACTAATTTGTGACACACTT
CCACTAACATTTACTAACCAGATTCGAGATCATTTTCAAAACTTGGTGCG
AATCAACCTTTATTTTGATGATACACATATAAGTGAAAATGAATTCGCAG
CATATATTACAGATTTAACGGTGATGAATTTAGGAGATTGGGAACTGCAT
GACATATGCGCAATGTGTTGCGGGAAGGGTTACTTTTCCCATAATGGTCA
TGTTGCCCAAACCACAAATCAAATCAATGAGAAATACAAAACTCTAATTA
ATTGGATCGATCGAATTATTACTCGAATCAATGAAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008418XLOC_008418Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015045-proteinTCONS_00015045-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015045-exon-sc0000203-1575043694:95029..96512TCONS_00015045-exon-sc0000203-1575043694:95029..96512Clytia hemisphaericaexon
TCONS_00015045-exon-sc0000203-1575043694:91162..91202TCONS_00015045-exon-sc0000203-1575043694:91162..91202Clytia hemisphaericaexon
TCONS_00015045-exon-sc0000203-1510915933:95029..96512TCONS_00015045-exon-sc0000203-1510915933:95029..96512Clytia hemisphaericaexon
TCONS_00015045-exon-sc0000203-1510915933:91162..91202TCONS_00015045-exon-sc0000203-1510915933:91162..91202Clytia hemisphaericaexon
TCONS_00015045-exon-sc0000203-1491911889:95029..96512TCONS_00015045-exon-sc0000203-1491911889:95029..96512Clytia hemisphaericaexon
TCONS_00015045-exon-sc0000203-1491911889:91162..91202TCONS_00015045-exon-sc0000203-1491911889:91162..91202Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000203supercontigsc0000203:91162..96512 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.026289	0	0	0	0	0	0	0.0681529	0.0844184	0.136564	0.0179544	0.374009	0.516108	0	0	0.101189	0.124459	1.00302	1.2202	0.204624	0.305129	0.0618208	0.0562041	0.153884	0.0820856	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024810Mab-21_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015045 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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