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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015052 ID=TCONS_00015052|Name=TCONS_00015052|organism=Clytia hemisphaerica|type=transcript|length=991bp
TTTACCATTAGGTCATTGAATTTTTCTCATTATTGACTTGGCATTGgaca
tttttgtataatttgtaattttttcccTTTCCCTTAATTATCATTTATAA
ATTTTAGGAAAAGGTTTGAGGTGCAGAAAAATATTGCGGAAACACAAGAA
CTGCTTGATGCAACTCGGTTGGAACTCAAAGCTGAAacagaaaaagaacT
ATTACAAAAAGAAACTCATTCAAAGAATATGAAGGTTTATGATGAACAGT
TCAAATTAATAAAGGACAAGgctgaaaaatttgaaaaatatgtcgAAAAT
AATTGCAACAAACTTGACCAGAAGTTTGAACAACTGAGGAATTGAATGGC
GTGGAAAAATCAACCAATTTTTTTGTAGATATCGATTTTGTACATAGTAT
TCCAAATTCGAGTGGATTCAAGGTACTCTAAGTAATTCGTAAATATTTTA
TCCTAATTggattgaaatattttctaattGGAATGAGTAACCTTTAAAGG
TATTCTTGATTAAAATTTTggctgcgaccgcagtcggaggcgacccaaag
gctcgtctttcaatagctatctacccaaaggtaggagAGGTCGCCActtt
ttctccctggatttctccacttacccttgatccttctcttaattgctgag
tatcgagcagagaggcatcaagtaccattttgagaatctttggtatgacc
cagctgggggttgaacccacaaccttgcaacCTTTTCATTATAATTATAA
AGCATCTTTCCAGCTTCGTCTCTGTGTTTTGTATATTTATATTTATCCAA
CATGTAATTAGACTATATTGAACGAGCAAAAGAAATTTATAACCTTTTGA
GCTAATCGTTAATTTCTGGCAAAAAAACTGTCAACAGCATCATGGGTTGC
TTTGTCACCATTTTCATCCTgattctaattttattctttcAATCTAAATG
TAAATAATTGTAAATTTTACTTCCATACTTATCAGTATCTG Run BLAST on NCBI transcript from alignment at sc0000203:230870..233143- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015052 ID=TCONS_00015052|Name=TCONS_00015052|organism=Clytia hemisphaerica|type=transcript|length=2274bp|location=Sequence derived from alignment at sc0000203:230870..233143- (Clytia hemisphaerica)
TTTACCATTAGGTCATTGAATTTTTCTCATTATTGACTTGGCATTGGACA
TTTTTGTATAATTTGTAATTTTTTCCCTTTCCCTTAATTATCATTTATAA
ATTTTAGGAAAAGGTTTGAGGTGCAGAAAAATATTGCGGAAACACAAGAA
CTGCTTGATGCAACTCGGTTGGAACTCAAAGCTGAAACAGAAAAAGTATT
TTTTTTGAAAATCTTGGTTTTGTCAGTATGGAATTTTGAAATTATCAGAA
AAAGTTTTGAAATTGTTTGTGTAACTTTTATTTTAGAATTGTCCACTGAG
TCTGAAATATTGATATTGAATTTTATTTTTCAGGAACTATTACAAAAAGA
AACTCATTCAAAGAATATGAAGGTTTATGATGAACAGTTCAAATTAATAA
AGGACAAGGTACTTCCACTAATTTAAATACTGTTGGGTNAATCATAGGGT
TAAAAATTAATGAAAATTTTAGCTCGAGAAAACGGAGACCTGTTGTATAT
TTTTGGAAAGCTCTCAAAAAATTAAGATTAAAGATATATTGCAAGTATAG
GTGATTTCTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACAAGGTACTTCCA
CTAATTTAAATACTGTTGGGTCAATGCTTCTTGCTTTATATTATTTGTCT
CTTCGTTTATGAACCACTACGAAGTTTTAAGTGACTTCTAAAATTACTGG
CATCAAATATTTCTCAATGAAAAGCTTGGTAACTTGGTAACATTTTATGG
AAATTATTAGTTTTTTTTACTTGTCTACTGTTAGAAAGATATCAATCCAA
TAACTGATTATTATTTTTTTTAGGCTGAAAAATTTGAAAAATATGTCGAA
AATAATTGCAACAAACTTGACCAGAAGTTTGAACAACTGAGGAATTGGTG
AGTTTGAGAATTAATTTATTTGCATTTGTTTAAACCTGTATAACACAGCA
GATGTAACATCTCTGACTCTGTATTTATAAAATTTTCAGATTTCTTTCCA
TTATTGACTTCAATTATATCGGTCGAGCCTCTATAACTCGAATTTCTCCT
TAACTCGAACAAGTATTCTTATCCCTTCAGTTAACTATGCTTTATAAACC
TTTCCATAACTCCATAATAATAATTTCACAACTCGAAATTTTCTTTACTC
GAACTTATTTCTGTTCCCTACTTGAACATTATTAAGTAGATTCCACTGTA
TTATATTTTTCTTACGTAGTTCTTCGTTTTATCCTTTTCTCTTATATAAC
ATTTCTTGTCGCATTCTTCCATTTCAGAATGGCGTGGAAAAATCAACCAA
TTTTTTTGTAGATATCGATTTTGTACATAGTATTCCAAATTCGAGTGGAT
TCAAGGTACTCTAAGTAATTCGTAAATATTTTATCCTAATTGGATTGAAA
TATTTTCTAATTGGAATGAGTAACCTTTAAAGGTATTCTTGATTAAAATT
TTGGCTGCGACCGCAGTCGGAGGCGACCCAAAGGCTCGTCTTTCAATAGC
TATCTACCCAAAGGTAGGAGAGGTCGCCACTTTTTCTCCCTGGATTTCTC
CACTTACCCTTGATCCTTCTCTTAATTGCTGAGTATCGAGCAGAGAGGCA
TCAAGTACCATTTTGAGAATCTTTGGTATGACCCAGCTGGGGGTTGAACC
CACAACCTTGCAACCTTTTCATTATAATTATAAAGCATCTTTCCAGCTTC
GTCTCTGTGTTTTGTATATTTATATTTATCCAACATGTAATTAGACTATA
TTGAACGAGCAAAAGAAATTTATAACCTTTTGAGCTAATCGTTAATTTCT
GGCAAAAAAACTGTCAACAGCATCATGGGTTGCTTTGTCACCATTTTCAT
CCTGATTCTAATTTTATTCTTTCAATCTAAATGTAAATAATTGTAAATTT
TACTTCCATACTTATCAGTATCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015052-exon-sc0000203-1575043694:232949..233143 | TCONS_00015052-exon-sc0000203-1575043694:232949..233143 | Clytia hemisphaerica | exon |
| TCONS_00015052-exon-sc0000203-1575043694:232736..232810 | TCONS_00015052-exon-sc0000203-1575043694:232736..232810 | Clytia hemisphaerica | exon |
| TCONS_00015052-exon-sc0000203-1575043694:231897..231970 | TCONS_00015052-exon-sc0000203-1575043694:231897..231970 | Clytia hemisphaerica | exon |
| TCONS_00015052-exon-sc0000203-1575043694:230870..231516 | TCONS_00015052-exon-sc0000203-1575043694:230870..231516 | Clytia hemisphaerica | exon |
| TCONS_00015052-exon-sc0000203-1510915933:232949..233143 | TCONS_00015052-exon-sc0000203-1510915933:232949..233143 | Clytia hemisphaerica | exon |
| TCONS_00015052-exon-sc0000203-1510915933:232736..232810 | TCONS_00015052-exon-sc0000203-1510915933:232736..232810 | Clytia hemisphaerica | exon |
| TCONS_00015052-exon-sc0000203-1510915933:231897..231970 | TCONS_00015052-exon-sc0000203-1510915933:231897..231970 | Clytia hemisphaerica | exon |
| TCONS_00015052-exon-sc0000203-1510915933:230870..231516 | TCONS_00015052-exon-sc0000203-1510915933:230870..231516 | Clytia hemisphaerica | exon |
| TCONS_00015052-exon-sc0000203-1491911889:232949..233143 | TCONS_00015052-exon-sc0000203-1491911889:232949..233143 | Clytia hemisphaerica | exon |
| TCONS_00015052-exon-sc0000203-1491911889:232736..232810 | TCONS_00015052-exon-sc0000203-1491911889:232736..232810 | Clytia hemisphaerica | exon |
| TCONS_00015052-exon-sc0000203-1491911889:231897..231970 | TCONS_00015052-exon-sc0000203-1491911889:231897..231970 | Clytia hemisphaerica | exon |
| TCONS_00015052-exon-sc0000203-1491911889:230870..231516 | TCONS_00015052-exon-sc0000203-1491911889:230870..231516 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000203 | supercontig | sc0000203:230870..233143 - |
Blast
The following BLAST results are available for this feature:
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