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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015106 ID=TCONS_00015106|Name=TCONS_00015106|organism=Clytia hemisphaerica|type=transcript|length=2639bpRun BLAST on NCBI protein sequence of TCONS_00015106-protein >TCONS_00015106-protein ID=TCONS_00015106-protein|Name=TCONS_00015106-protein|organism=Clytia hemisphaerica|type=polypeptide|length=819bp IYYLIDDLCYFFLLLDLKHYESLITEMSQKTTTLIQHIKALGLSQKECAKRun BLAST on NCBI transcript from alignment at sc0000204:259559..271402+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015106 ID=TCONS_00015106|Name=TCONS_00015106|organism=Clytia hemisphaerica|type=transcript|length=11844bp|location=Sequence derived from alignment at sc0000204:259559..271402+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000204:259559..271402+ >TCONS_00015106 ID=TCONS_00015106|Name=TCONS_00015106|organism=Clytia hemisphaerica|type=CDS|length=24600bp|location=Sequence derived from alignment at sc0000204:259559..271402+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00015106 vs. Swiss-Prot (Human)
Match: PDZD7 (PDZ domain-containing protein 7 OS=Homo sapiens GN=PDZD7 PE=1 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 5.363e-20 Identity = 67/223 (30.04%), Postives = 116/223 (52.02%), Query Frame = 1
Query: 436 INIEKV-SGNVGLFLCGKIESIPGLKVGYIDEGSIAHTKGVKKGDYIIEVNGKSMEKISLKTALAVLPLLTSLKLIIKRPEKI--IKTLSTSLNPWT-----KEKIYPTTTSASYTTVKSPSQQTIKLVRKSFKDSIGFSIRGGNEYLSPIYVSGVDKFSIAESSGLKVGDCILSINGKDCRGLNHHEAVQFIQNNSHLTFKVKRNNSKTRSISHQSSRYCTL 1080
+ +EK +G +G + G E G+ V ++EGS A G+ GD I EVNG S+E ++ +A+ VL + L ++++R ++ IK S W + + ++ S T+ + ++ + L S +GF+IRGG E+ IYVS VD +AE +G+KVGD +L+ NG ++H +AV+ ++ +H+ +K + + S YC L
Sbjct: 87 VRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTSSSRLHMMVRRMGRVPGIK-FSKEKTTWVDVVNRRLVVEKCGSTPSDTSSEDGVRRIVHLYTTSDDFCLGFNIRGGKEFGLGIYVSKVDHGGLAEENGIKVGDQVLAANGVRFDDISHSQAVEVLKGQTHIMLTIK-ETGRYPAYKEMVSEYCWL 307 The following BLAST results are available for this feature:
BLAST of TCONS_00015106 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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