TCONS_00015183 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015183
Unique NameTCONS_00015183
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1246

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015183 ID=TCONS_00015183|Name=TCONS_00015183|organism=Clytia hemisphaerica|type=transcript|length=1246bp
TGTGCATGGAAAACAGCCGGATATTACGCTTTTAGTGAAAACGCAAACCT
CTTTTTTTACTGTAACGAAAACTACCAAAATGTTGGATGTCAGAGATGTC
CAGCCAACTTGGTTTACAATCAAGCATGCGCTCAATGCTTACCCAAAGAC
CAACAAAAGTGTGATGTACCATCTAAACCATCCGAACCAGCCGAAACTAA
TTTCTGTGCACCAGAAAGATTCTGTAAACAACACTCCATCAAGCACAAAC
CATTGACCTTCCTCTTTGCCGTGGAAGGAGACGCCTCATCATTTTTCTCA
TGCAATCAACTCAAAGAAGCAACACAATGTTTATCTTGCCCTGCTGGTCT
TGTCTTTAACGAAGTTTGCCAAGGATGTCGACAATTCAAAACTAGCGATG
CTAAACAATGCAATGCAGTCAAGCCAGATGATGGAAAACCAAAAACCGAT
GAGGAACTCAATAAATTCAGATGCCCAGACTTCTTCTGTCAAAACCGACC
TGTTGGAAACCACGAAACCGGTGCCGGTGAAGAGACCTTCATTACTTGTT
CCCCTGGTAACCAATGTATCAAAAGATGGTGCCCATCAGGAACTGTTTAC
AGCAAAGCCTGTGATGCTTGTACTTACAGCTATATCAATTTTGCTAATCA
GAAGCTATGTAAACCAACAACTGCACCATCATTCCAAGCAGCAAAATGCA
GAGATGAAGATTTCTGTAAAAAAGGAGGAAAGCCCGGCCCCAACCAACCT
CCATCTCACTTTTACGAGCAACCTTACGTTTTCTACGAATGTGCCGCAAA
AGTGTGTTACCGTAAAGCATGTCAAACCACCCTCGTTTACAATGACAACA
TTAAAGGATGTGATTACGCCCCAAACCCGAAATCAACATGCAAAGTTACT
GGTTTCTGTAACGGATTAGCTAATGGAGGATATGCACCACCAAAAGCAGC
TCATGAAGGAAATAACGTTTGGTATCAATGTTTCACGCATCCCACCCACG
TGGAATGTGTCCGTAACACGTGCCCAGGAGAACAAGTTTATCAAGCGTTT
AACAACCAATGTGTTGCGCCATCATATTATAATTATCATTGGTAAATAAT
ATTCtcagacataattttttttccggacatGATTTAATgtcattaaaatg
aaatttgaacgACGGaattaatttttatataaatctttacgatttttttt
ttttttaataaaatgaattttaatgaattttgattAGATTTTTTCC
Run BLAST on NCBI

transcript from alignment at sc0000205:112439..116339+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015183 ID=TCONS_00015183|Name=TCONS_00015183|organism=Clytia hemisphaerica|type=transcript|length=3901bp|location=Sequence derived from alignment at sc0000205:112439..116339+ (Clytia hemisphaerica)
TGTGCATGGAAAACAGCCGGATATTACGCTTTTAGTGAAAACGCAAACCT
CTTTTTTTACTGTAACGAAAACTACCAAAATGTTGGATGTCAGAGATGTC
CAGCCAACTTGGTTTACAATCAAGCATGCGCTCAATGCTTACCCAAAGAC
CAACAAAAGTGTGATGTACCATCTAAACCATCCGAACCAGCCGAAACTAA
TTTCTGTAAGTATCTAAACtaataatgattttttgtttctttaaaatatc
tttccaatagcaaaaactggttttgaaGTGCCAAGAAACCGAATACAGAG
GGATAAACTAAAATCCCATTTATACTACTTATAAAGCAATAAAAGCCTCA
TTTTGAGCTATTGCAGCTCTATAATATTTATAATATTTAGGACGCACTCT
GTCGGATAGAAAGCCATTTTTACTGATAAAGTGAACGAACTTTGCTAACG
ATATCACTTTATTCACTGTAGGTGAATTAGACAGGTCTTAATTTTTCTGT
ACACAATATTTATGCCTCTAATTTggacctctattattcgaatctctctg
taattcgaactaaaatatagGTCCCCGAAAAGCCGTTTAAAATACTGTCT
GTAATTTGAAACTTTCTCTAATCCGAATTAAATTCTTGGTCTCTTGAATA
TCGAATTAGGCAAAGTCAACTCATAGTACAAGGTAACAGGAATAGTCGAA
AATATTTCCACATTCAAAGCAAACACGTGTCTCCTTTTAATAACAAAGGA
ACAAATTCTAATGATCTCATTTCATTCTATTTAAAGGTGCACCAGAAAGA
TTCTGTAAACAACACTCCATCAAGCACAAACCATTGACCTTCCTCTTTGC
CGTGGAAGGAGACGCCTCATCATTTTTCTCATGCAATCAACTCAAAGAAG
CAACACAATGTTTATCTTGCCCTGCTGGTCTTGTCTTTAACGAAGTTTGC
CAAGGATGTCGACAATTCAAAACTAGTAAGTGTGAACAGGGCCTTATATG
AATGGTGAAGAATCAGCCAGGCTAAACAGTGCCTTAGTTGAAAGAATCAA
CCAATTTTTAGGCTAAACAGTGGACTCAAATTCGAACATCCGTATAATAT
GAATTAGACTTCCCCTTGAAGATTGAATTAGTGAGAATAACCTTGTATGA
AACCTTTTAGCGGatataagcaaagaaaaagCAATTTTAAGGGCCACGCT
TTCTACTCAAATAAGAGTGTTCCATTGAATCCTTAGCTCATCTTTGTTAG
CCTATGNTTAGACTTCCCTTTGAAGATTGAATTAGTGAGAATAACCTTGT
ATGAAACCTTTTAGCGGatataagcaaagaaaaagCAATTTTAAGGGCTA
CGCTTTCTACTCAAAGAAGGGTGTTCCATTGAATCCTTAGCTCATCTTTG
TTAACCTATTTGTATTTTGTGCTTATCAGAAACTAAAGCTCTATCTACAT
TTCACAATAGGCGATGCTAAACAATGCAATGCAGTCAAGCCAGATGATGG
AAAACCAAAAACCGATGAGGAACTCAATAAATTCAGATGTAAGTTTCTat
tcaaatcattcttaaaTGGAACTGGGTAATCGAGTCTGACTAGGAAAAGT
TTTCACTCAAGTCCCTCTCTCAAGTGGAACTTGATTATCGAGTCTGACTC
TAAAAAACCAGCTCCAAATGTATGGGATTGAACTGGGAAAGCGACCGGTC
GTTGTGAACGtcagataaacgtcgaaaaaacgttgtgtgccagctgggaa
aaaGTGTCCAGCCATTCATTAACGTGAAATTGAATTCTAAGATGTCTTcg
atatcaaaatattttgtaagTCTTACATGTATTAAATTCTTATTTTGTCT
CAATTCAGGCCCAGACTTCTTCTGTCAAAACCGACCTGTTGGAAACCACG
AAACCGGTGCCGGTGAAGAGACCTTCATTACTTGTTCCCCTGGTAACCAA
TGTATCAAAAGATGGTGCCCATCAGGAACTGTTTACAGCAAAGCCTGTGA
TGCTTGTACTTACAGCTATATCAATTTTGGTAagtgatgtttttcttttc
aaattcttgAGTGCTATAAGTACAGTGAAgttgaacctctataactcgaa
cgtctccttaagccgaacaagttttatggtctcttaagttaacaatgcct
tataaaccttacccCAACTGTATTAGGCTTTTTTGAGACTTATAAACCTA
AACCATGCAAATCAAGTTTTTTGAGGTTACAAATAGCAAAATCATCATCT
TCGCCCTCATTCCCTTTTTAACGCCCACGATGCGCCTTGGCTTTAGTAGA
CGCTTTTATACACATAACAACTCTTGACTATCAAATAACCGTCTATGACG
CTACACTAAATGCTCATCTTACGCTTACTACGATCGCTTGGAAAAGTTCT
AAATTCtctcttctttatttttagCTAATCAGAAGCTATGTAAACCAACA
ACTGCACCATCATTCCAAGCAGCAAAATGCAGTAagtaaaacatttgaaa
atctttttgatgagGCATTTCTGTTGTGTAGAGTTAtagaaaaataacga
agattTTCAAGTTTCCTCCAGtacctcaaaatattttggatCATTGCACC
ACTTTTTGAAGTGAAGAACGAAAATGAAGCCATTTTATTGGTGAGAGTTG
ACGTGAAtcttgaatttaaccaatagaatggattcatttcgtttcggagc
gaaacagaAACGTAGTGTGTGAGTGTGGTCTTAAAATCTGGAATTTAGAA
ATAGTAAATACCGGTAATTTCTTCATGCAAAACCGGCGTACCGgccaaaa
attacgaaaatgtcGAAAATGTTCCGACGAGTACTAGAATACCGAATATT
CAGTNATAATAAATCTTGTTCTTTTTCATATTAGGAGATGAAGATTTCTG
TAAAAAAGGAGGAAAGCCCGGCCCCAACCAACCTCCATCTCACTTTTACG
AGCAACCTTACGTTTTCTACGAATGTGCCGCAAAAGTGTGTTACCGTAAA
GCATGTCAAACCACCCTCGTTTACAATGACAACATTAAAGGATGTGATTA
CGCCCCAAACCCGAAATCAACATGCAGTAAGTGTTTTGTTGATGTTAAAA
ATTTGAAGCcgtttttcaaagtttaaaatttaaaaacagttAAGCAATAT
ATTTCGGTGGTATCACCATTCTCAAGCTTATAAAAATACAAGTGTTCTGT
TTTGTTGATGCTATTTAGATTCAAGCCAAGTCTTTTAGAGAGGAATCTTC
CACCTTTTTTAGGCAAGCAAAAGTGATTTCTTTAAGATTTGCGCCCTACT
TCGGATGAAAGATTGAATGAAgcgttttttttgttgtttttttttccgtC
TGTCACCTCTTTCGGCCTCTAATTGTTACTTTCGATCCTGCGTTTGTATG
TAGAACACTATTTATGTATAAAATAATTGGTTTCAAATTTTACAGAGGAG
ATTTGACTCTAGCCCTAGGCTATGTGTCAGAGTTATGGAAAcataataat
ataatattattACATAATATTTTCTAATTCTCATCTCTTATTTGTAGAAG
TTACTGGTTTCTGTAACGGATTAGCTAATGGAGGATATGCACCACCAAAA
GCAGCTCATGAAGGAAATAACGTTTGGTATCAATGTTTCACGCATCCCAC
CCACGTGGAATGTGTCCGTAACACGTGCCCAGGAGAACAAGTTTATCAAG
CGTTTAACAACCAATGTGTTGCGCCATCATATTATAATTATCATTGGTAA
ATAATATTCtcagacataattttttttccggacatGATTTAATgtcatta
aaatgaaatttgaacgACGGaattaatttttatataaatctttacgattt
tttttttttttaataaaatgaattttaatgaattttgattAGATTTTTTC
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008502XLOC_008502Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015183-exon-sc0000205-1491911889:112439..112643TCONS_00015183-exon-sc0000205-1491911889:112439..112643Clytia hemisphaericaexon
TCONS_00015183-exon-sc0000205-1510915933:112439..112643TCONS_00015183-exon-sc0000205-1510915933:112439..112643Clytia hemisphaericaexon
TCONS_00015183-exon-sc0000205-1575043694:112439..112643TCONS_00015183-exon-sc0000205-1575043694:112439..112643Clytia hemisphaericaexon
TCONS_00015183-exon-sc0000205-1491911889:113225..113413TCONS_00015183-exon-sc0000205-1491911889:113225..113413Clytia hemisphaericaexon
TCONS_00015183-exon-sc0000205-1510915933:113225..113413TCONS_00015183-exon-sc0000205-1510915933:113225..113413Clytia hemisphaericaexon
TCONS_00015183-exon-sc0000205-1575043694:113225..113413TCONS_00015183-exon-sc0000205-1575043694:113225..113413Clytia hemisphaericaexon
TCONS_00015183-exon-sc0000205-1491911889:113899..113976TCONS_00015183-exon-sc0000205-1491911889:113899..113976Clytia hemisphaericaexon
TCONS_00015183-exon-sc0000205-1510915933:113899..113976TCONS_00015183-exon-sc0000205-1510915933:113899..113976Clytia hemisphaericaexon
TCONS_00015183-exon-sc0000205-1575043694:113899..113976TCONS_00015183-exon-sc0000205-1575043694:113899..113976Clytia hemisphaericaexon
TCONS_00015183-exon-sc0000205-1491911889:114297..114467TCONS_00015183-exon-sc0000205-1491911889:114297..114467Clytia hemisphaericaexon
TCONS_00015183-exon-sc0000205-1510915933:114297..114467TCONS_00015183-exon-sc0000205-1510915933:114297..114467Clytia hemisphaericaexon
TCONS_00015183-exon-sc0000205-1575043694:114297..114467TCONS_00015183-exon-sc0000205-1575043694:114297..114467Clytia hemisphaericaexon
TCONS_00015183-exon-sc0000205-1491911889:114863..114919TCONS_00015183-exon-sc0000205-1491911889:114863..114919Clytia hemisphaericaexon
TCONS_00015183-exon-sc0000205-1510915933:114863..114919TCONS_00015183-exon-sc0000205-1510915933:114863..114919Clytia hemisphaericaexon
TCONS_00015183-exon-sc0000205-1575043694:114863..114919TCONS_00015183-exon-sc0000205-1575043694:114863..114919Clytia hemisphaericaexon
TCONS_00015183-exon-sc0000205-1491911889:115323..115514TCONS_00015183-exon-sc0000205-1491911889:115323..115514Clytia hemisphaericaexon
TCONS_00015183-exon-sc0000205-1510915933:115323..115514TCONS_00015183-exon-sc0000205-1510915933:115323..115514Clytia hemisphaericaexon
TCONS_00015183-exon-sc0000205-1575043694:115323..115514TCONS_00015183-exon-sc0000205-1575043694:115323..115514Clytia hemisphaericaexon
TCONS_00015183-exon-sc0000205-1491911889:115986..116339TCONS_00015183-exon-sc0000205-1491911889:115986..116339Clytia hemisphaericaexon
TCONS_00015183-exon-sc0000205-1510915933:115986..116339TCONS_00015183-exon-sc0000205-1510915933:115986..116339Clytia hemisphaericaexon
TCONS_00015183-exon-sc0000205-1575043694:115986..116339TCONS_00015183-exon-sc0000205-1575043694:115986..116339Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000205supercontigsc0000205:112439..116339 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.466068	0.312563	0.357383	0.243194	0.820153	0.369472	0	0.371505	0	0	0	0	79.0341	39.8676	23.851	40.875	4.33337	10.5018	0	1.35509	0	0	0	0	0.419536	0.162227	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015183 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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