TCONS_00015189 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015189
Unique NameTCONS_00015189
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length601

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015189 ID=TCONS_00015189|Name=TCONS_00015189|organism=Clytia hemisphaerica|type=transcript|length=601bp
ATTCCATAAATACTCATATATTTGATTGGAAACTTAACACTGACACAACA
ATGAAGTTAACAATCGTTGTTTTATGCCTTGTAATGGCAGGAGTCACGTA
TGCTGGAAATCAAGCAAaTTACTGTCAACCACCAAGTTGCTACAAAAGAT
TCCCTCCTTACGCCAATCAATTATGTTTTAATCTCCATGGTCATCGAAGA
GCCGTCGGTTATTACCGTTATCCATTCAGCCCGCATCTTTTCTTCTACTG
CAACAAATTCGGTGTGAACTCCGGAACTCAACAATGTCCAGCTGGTCTTT
GGTTCTCTGAAAAATGCGTTCAGTGCTTGAAGCCTTATGATGCCGTCAAC
AATGTTTGCAGTAAGAGCTCTGGCGATGGTAGTGGACAATCAACAAACAC
TGATGCCAACTGTGCACCAGAAGGATTCTGCAAACAACACTCCATCAAGC
ACAAACCATTGACCTTCCTCTTTGCCGTGGAAGGAGACGCCTCGTCATTT
TTCTCATGCAATCAACTCAAAGAAGCAACACAATGTTTATCTTGCCCTGC
TGGTCTTGTCTTTAACGAAGTTTGTCAAGGATGTCGACAATTCAAAACTA
G
Run BLAST on NCBI

transcript from alignment at sc0000205:124628..129737+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015189 ID=TCONS_00015189|Name=TCONS_00015189|organism=Clytia hemisphaerica|type=transcript|length=5110bp|location=Sequence derived from alignment at sc0000205:124628..129737+ (Clytia hemisphaerica)
ATTCCATAAATACTCATATATTTGATTGGAAACTTAACACTGACACAACA
ATGAAGTTAACAATCGTTGTTTTATGCCTTGTAATGGCAGGAGTCACGTA
TGCTGGAAATCAAGCAAGTAAGTAAAATTTACTTTACCTCGACAATTCGA
ACACTATAAGTCGATTGTCTTCATAATTCGAACTTCttcaactcgaacaa
attttttaaatttttataaagttGTTTATATTCTGAAACTCGAACACATT
TCATTCCTCTTCGTTCGTGTTCGACTTATGGAGACATCACCGTATCTCGC
GATCTTTGTTTAACGATATACTTTGATTTTTGATAGAATAAGTCATGCCC
AAGTCTAAGAATACTTTACTCAATATCTTAAGAACTCATTTTCAGAATAA
GAATATCTTTGAGAATATACGGTGTGTATAAAAATAAACCTCTggtgttt
tgatagatttttcGAATCTAATTGGTTCCTTGCAATTTTAGAGAATTAAA
CTTCATCATAACGaatttatcttttatttttattttcacagaTTACTGTC
AACCACCAAGTTGCTACAAAAGATTCCCTCGTAAGTAGAAAAAGCAAATT
CCTCGAAATGCAAAAACCAGTACGTTAAAACTGAGCCTCAGACTTTAGCT
CTCTTTTTTGCAACCTTTATTTCCAACCagatttttgttggcgaaaacgT
TTAGAACATCCCAGACTTAGTCGAAAATTTTTATCCAATCAGATTCAACT
CGCTATATTGTAGCGAGCAGATAAACGGGAAGTTCTAAGCtttttcgcca
acaaaaatcataaaaaagaaataagtttatacctaaactacctttattgt
tctATTGGGTAAAAATCATGTAATTTTAACATTTCTGAAATTaagctcag
attgttcttaatttgttcttagatttttgaaaaaaaattaatctttaTTT
ATAGCTTACGCCAATCAATTATGTTTTAATCTCCATGGTCATCGAAGAGC
CGTCGGTTATTACCGTTATCCATTCAGCCCGCATCTTTTCTTCTACTGCA
ACAAATTCGGTGTGAACTCCGGAACTCAACAATGTCCAGCTGGTCTTTGG
TTCTCTGAAAAATGCGTTCAGTGCTTGAAGCCTTATGATGGTAAGACGAA
GTTTTATTATTtgtacttttattttttgtcCCAATTCCGGTAAAATAACG
TCTGACTTCGTGTAGTATGAACAACTTTCTATGCAAGCTGATCCCAGCCA
CTGACCTTTacataccctggaccaagtttatcaatcccAATCAAGCAAAA
TCTGAGCTGATCggagctttttgaaaaatgatagcctaatggtagcacta
ctcaatagcggtgtaaatgcatcaaGAGCGCTAGGTCAACTTTCCctaga
aaacttttgatgatatgTAAAGGTCAGTGATCCCAGCCTTCCGCAATTCT
AAAATCCATTTTCCTACCATTGACCTACCATGACTATCTAAACTTCAATA
AGCGTTTGTATATAGAAATTTCAAGATGGAAATTCCTGATAAATCTCCAT
GATCTATGACGATATTCATCTCTTTATCTCTGTCTTTTTTCAGCCGTCAA
CAATGTTTGCAGTAAGAGCTCTGGCGATGGTAGTGGACAATCAACAAACA
CTGATGCCAACTGTAAGTTGCCTTCTTTATCCCATAGAAATATCTAACTT
TGAAAAAGTTTAGCGGAATAACTTCGGAATAACGCACATTTCTTTACATT
TATTTTTTGTGCCGCCAAATTTTGATCTGAGATTGGATTTAGATGATTTT
GCATTTTCACCAAGAGTATATGTTGATTCATCCTTTTACAAATTGGAGGG
GGAACACAAAAGAAACTTCAGAATAATATCTATCCCAAACAAAGGTCTCT
CGTCCATCAAATCTAGGCAAAGTTATAGGATATGCTATTCAATATAATTT
TCTGAGTAGACCCTGCTATCCCTCgcaaactacaatcatggacaaaaatg
tttgagaaaaacacaggagtttgcagtaaaaatgtagaaaaagaattatT
CGTTCTTTCAGAGATAAtatgtagacgataggatcgtctaatccCCAATA
CCAATAATTTTTCGTCCCTttcgttgtttcaacgttcatctaacgttata
tggacgttgtgaacgttagatagacGATGAAACAATATTATTTCCTCCCT
TCTCCAGGTGCACCAGAAGGATTCTGTAAACACAAAGCTGATGGATTATA
CGCATTAAATTCATATTCTCCAAAATTCTTCTCTTGTGTCCAATGGAGAG
CCACTCAATGTCAATCGTGTCCAGCTGGTCTTTATTTCAGCCAGAAATGT
CAAGTCTGTTTGGAAGAAGTACACCTTTGTAAGTTTTTCATAAAGCATTC
TTCTATTTCTCCGAAGCAAATCTATTTAGTAAATTCTCCGAGGAAACTCT
TAAGAGTAAAATTTCAACTTAATGCTATTAATGACGCCCTatatttttat
gattctgtttaAACTGCTTACTAAAGGTTTTTGTGTCTAATTTATTTGTG
AATTTTGCTTGACTTCGCTAAAGATTTCAATGTCGGTCGACAGTGTGAAT
GTAAAAGCGTCCGTAAAATTTCATCTCAAATTGAGAACTCGTTGTagtaa
tttctttttgaaatctaatcagtctttctttttttctttcaatcatAAAA
AGCTACTTGCCCACCAAGAGGAGACAACTCACCAGCCTCTAAACCACCAA
AATGTAAGTTTCTAGACTTTTTCCAAAGGCTAGATGTTTTCTTCTCTtca
atccaaaaaaattcaCCTACCATGCCTTACCAGTGAGGAAAGTTGGGGTT
GAATCCAACAATGTACCCTACAATCTGTGACttatttgaattaaaatttt
gtcGAAGGAAATTAAATTCACGAATCAGACTTCTTCAGatatatttgtat
ttttatgtAAGTTTCTATTTAAATCACTCTTAAATGGAACTGGGTAATCG
AGTCTGACTATGAAAAGTTTTCACTCAAATCCCTCTCTCAAGTGGAACTT
GATTATTTATTCTACAGATATATTTTCTCAATACTACCGAGTATTAAgca
gcctctataagaaacACTTTTCACTAGAAGACGAGCAGAAGCTTAACTTT
TTCCCTTAATGTTTCATAATATCACATTTTTCTTATTCTACGTTAACAGG
TGCTAGCAACGATTTGTGTGAATGGAAAACAGCCGGATATTACGCTTTTA
GTGAAAACGCAAACCTCTTTTTCTACTGTAACGAAAACTACCAAAATGTT
GGATGTCAGAGATGTCCAGCCAACTTGGTTTACAATCAAGCATGCGCTCA
ATGCTTACCCAAAGACCAACAAAAGTGTGATGTACCATCTAAACCATCTA
AACCAGCCGAAACTAATTTCTGTAAGTATCTAAACtaataatgatttttt
atttctttaaaatatctttccaatagcaaaaactggttttgaaGTGCCAA
GAAACCAAATACAGAGGGATAAACTAAAATCCCATATATATAACTTATAA
AGCAATAAAAGTCTTCATTTTGAGCTATTGCAACTCTATAATAATTATAG
TATTTAGGACGCACTCTGTCGGATAGAAAGTCATTTTTACTAATAAAGTG
AAGGACCTTTGCTAACGATATCTATTTATTCACTGTAGGTGAATTAGACA
GGTCTTAATTTTTCTGTACACAATATTTATGCCTCTAATttgaacctcta
ttattcgaatctctctgtaattcgaactaaaatatagGTCCCCTCAGCCG
AAAAGCCGTTTAAAATACTGTCTGTAATTTGAAACTTTCTCTAATCCGAA
TTAAATTCTTGGTCTcttgaatatcgaattagagaaagtcaaCTCATAGT
ACAAGGTAACAGGAATAGTCGAAAATATGGCCACATTCAAAGCAAACACG
TGTCTCCTTTTAATAACAAAGGAACAAATTCTAATgatatcatttttatt
tgtgAGCGTGTAAATCTCGCTAGAAACATTCACGACCACTACACTAGATT
AgccgctcaaaataatttagcaGTACGGCAAAACAGAAACAGATTTGAAG
CAAAAACCTTCGCAAGCTCTACAATTCCTATCTGGAATAACCTACCCAGG
GAATGCCGTGATGCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTGGAAACAATTCTTGAGCTGTCTAAAAGCTCTAGAATTTTTCG
GAGCCAGCCACTTAAAACAttcgttattattattattattattattatta
tcattttaTTCTATTTAAAGGTGCACCAGAAGGATTCTGCAAACAACACT
CCATCAAGCACAAACCATTGACCTTCCTCTTTGCCGTGGAAGGAGACGCC
TCGTCATTTTTCTCATGCAATCAACTCAAAGAAGCAACACAATGTTTATC
TTGCCCTGCTGGTCTTGTCTTTAACGAAGTTTGTCAAGGATGTCGACAAT
TCAAAACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008502XLOC_008502Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015189-exon-sc0000205-1491911889:124628..124744TCONS_00015189-exon-sc0000205-1491911889:124628..124744Clytia hemisphaericaexon
TCONS_00015189-exon-sc0000205-1510915933:124628..124744TCONS_00015189-exon-sc0000205-1510915933:124628..124744Clytia hemisphaericaexon
TCONS_00015189-exon-sc0000205-1575043694:124628..124744TCONS_00015189-exon-sc0000205-1575043694:124628..124744Clytia hemisphaericaexon
TCONS_00015189-exon-sc0000205-1491911889:125169..125207TCONS_00015189-exon-sc0000205-1491911889:125169..125207Clytia hemisphaericaexon
TCONS_00015189-exon-sc0000205-1510915933:125169..125207TCONS_00015189-exon-sc0000205-1510915933:125169..125207Clytia hemisphaericaexon
TCONS_00015189-exon-sc0000205-1575043694:125169..125207TCONS_00015189-exon-sc0000205-1575043694:125169..125207Clytia hemisphaericaexon
TCONS_00015189-exon-sc0000205-1491911889:125582..125767TCONS_00015189-exon-sc0000205-1491911889:125582..125767Clytia hemisphaericaexon
TCONS_00015189-exon-sc0000205-1510915933:125582..125767TCONS_00015189-exon-sc0000205-1510915933:125582..125767Clytia hemisphaericaexon
TCONS_00015189-exon-sc0000205-1575043694:125582..125767TCONS_00015189-exon-sc0000205-1575043694:125582..125767Clytia hemisphaericaexon
TCONS_00015189-exon-sc0000205-1491911889:126221..126289TCONS_00015189-exon-sc0000205-1491911889:126221..126289Clytia hemisphaericaexon
TCONS_00015189-exon-sc0000205-1510915933:126221..126289TCONS_00015189-exon-sc0000205-1510915933:126221..126289Clytia hemisphaericaexon
TCONS_00015189-exon-sc0000205-1575043694:126221..126289TCONS_00015189-exon-sc0000205-1575043694:126221..126289Clytia hemisphaericaexon
TCONS_00015189-exon-sc0000205-1491911889:129548..129737TCONS_00015189-exon-sc0000205-1491911889:129548..129737Clytia hemisphaericaexon
TCONS_00015189-exon-sc0000205-1510915933:129548..129737TCONS_00015189-exon-sc0000205-1510915933:129548..129737Clytia hemisphaericaexon
TCONS_00015189-exon-sc0000205-1575043694:129548..129737TCONS_00015189-exon-sc0000205-1575043694:129548..129737Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000205supercontigsc0000205:124628..129737 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.470879	0.512474	0	0	0	0	0	0	0	0	2.42759	8.15112	1.21579	0	0.245048	0	0	0	0	0	0	0.103496	0	0	0	0.0197952
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015189 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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