TCONS_00015222 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015222
Unique NameTCONS_00015222
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1465

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015222 ID=TCONS_00015222|Name=TCONS_00015222|organism=Clytia hemisphaerica|type=transcript|length=1465bp
aaaaacgtaaaaataaaaataaaaaaagatactaacgagaaaaaaattac
agtCATGAAATACCGTTTATCAAGCGAACCGCTGATTTTCTTCTACACCG
TAATCTACACTATTAATTATACAGTACTTCCACAACTTGTTGTCCGAAAA
ACATGTCATGCGCATGCGTACAATGAAACACTTTGCAGCAATGAAGATTT
CCTGTCCAAGAacgaaaacattaaaaaagaATCGACAACTTGGTGGTTCT
TCTTACTTCTCGGATCTCTACTACCTTCCGTCTTTACAGTCCTTATATGG
GGACCCATCACCGACGTTATTGGGCGCCGTCACGCCATGACCATTGTGCC
TTTCATCAACGGAATCAGGTCTTTGATTTATCTCATCAACTCGTATTATA
TGGATGCACATGTCGGGCATCATAAGTCAAATGGCATGTTACATCTCAAT
CGGCTTATCCCGCACAATCTTACCTGTATTCCTGGTCAATATTGCGGGTC
TTGGTATTCCCGTCGGCACGACAACCTTACGTTCTTTAGCAACCAAAAAT
GTTTCTTCGGAAAATTATGGCGCTGTTTTGGCGTCTTTGGAAGCAATGGA
TGTTCTAGCTGGCGTGTTAACCAATGCATCGACATTATGGACTTATAATG
TAACACTTCATGTTTACTCGGGGATCGCGTATTTTGCTTTGGGTGGATTT
TCCTTCTTATCACTGGTCTTCTTGGTTATTGCATATTGTTTGAGACGAGA
TATTCATGATAATTCTCTATGATGAATTTGCAACTTTGGTGAAAAATTTG
GTAAGAGTTTTTTCTTAAGATTTAAAGATGGAAGAAAGTATTGGTAAGAA
TTTATTAGTTTCTTTAGatttaatatgtttttaaaaCCGAATTTTATACG
ATTGTCTTATTTGTATTTCTACGGTTAtccatgatattcatgacgtaatg
ttttctacgaaaagaccccggtttttgccagtagtggcaaaaattttata
caacttttgtctagtttaaatttgccattaccggctaaaaccggggtatt
tccgtagaaaacattacgtcatgaatatcatgaatagtagCTTTTGCTTA
TCCCTAGATAGTTGGAAGTCAAGGAAAATAGACAGgtttccatttttttg
attgtttgttgCTTTTAATTCCGTCATGGTGATAAATAATTTTATGCTGG
AGTAAAATGGATCAACTtaaataaagaatttcaagaTCCTTATTAtatta
ttgggctattccattaaatttccatacaggggggtgaacgaaccttttca
agtcaaaaaactatttttggAAATGTGTTGAAAATGGCATAATTTGCAAA
AAGAcccttggaaaatttctttttggacctaccccggtggggtggaggtc
ctataaattaacccatgttcgttcgttcgttagtgtgttagttaccagct
tttctcgagattggc
Run BLAST on NCBI

protein sequence of TCONS_00015222-protein

>TCONS_00015222-protein ID=TCONS_00015222-protein|Name=TCONS_00015222-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
KNVKIKIKKDTNEKKITVMKYRLSSEPLIFFYTVIYTINYTVLPQLVVRK
TCHAHAYNETLCSNEDFLSKNENIKKESTTWWFFLLLGSLLPSVFTVLIW
GPITDVIGRRHAMTIVPFINGIRSLIYLINSYYMDAHVGHHKSNGMLHLN
RLIPHNLTCIPGQYCGSWYSRRHDNLTFFSNQKCFFGKLWRCFGVFGSNG
CSSWRVNQCIDIMDL
Run BLAST on NCBI

transcript from alignment at sc0000205:198827..201437-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015222 ID=TCONS_00015222|Name=TCONS_00015222|organism=Clytia hemisphaerica|type=transcript|length=2611bp|location=Sequence derived from alignment at sc0000205:198827..201437- (Clytia hemisphaerica)
AAAAACGTAAAAATAAAAATAAAAAAAGATACTAACGAGAAAAAAATTAC
AGTCATGAAATACCGTTTATCAAGCGAACCGCTGATTTTCTTCTACACCG
TAATCTACACTATTAATTATACAGTACTTCCACAACTTGTTGTCCGAAAA
ACATGTCATGCGCATGCGTACAATGAAACACTTTGCAGCAATGAAGATTT
CCTGTCCAAGAACGAAAACATTAAAAAAGTAAGTCTACAAAATGTTACAT
TTTCATTTCGTTTCGTCATTATTGACTACTTGGAAGAATCTGTATTTTTC
TGCGTTTTGAGTATTACGTCCTATTTGTCCTTTAAGCAATTTTTCTGTCA
AAATTTCACCCAAATCTATTGGATTTAAACCTTAATTGTAATTGCAACAT
TTAGAACATCCAAAATTGTAATGCAAGAAAAATCCAGAGAGGTCTTATTC
CGTTTCAGTATTCTGAATTACAGTTGACTCATGCGAACTCGAACGGGGAA
TCTCATTGTTTGAACTATAGAGATATTTGAATTATAAAGAGTATTTTAAA
AGAGGGTTTCTCCTGACGGAAGTTCGAATTATAATATAAAGATTCGAATA
ATAGATTTTTTGTTATTATTTTTAGGAATCGACAACTTGGTGGTTCTTCT
TACTTCTCGGATCTCTACTACCTTCCGTCTTTACAGTCCTTATATGGGGA
CCCATCACCGACGTTATTGGGCGCCGTCACGCCATGACCATTGTGCCTTT
CATCAACGGAATCAGGTCTTTGATTTATCTCATCAACTCGTATTATATGG
ATGCACATGTCGGGTATTTGTTATTTGGTTCGTTTTTATCGTGTTTTTAC
GGTGAATTCCAAGGCGTAGTTGCGCTTTGTTACGCCTATTTAGCGGATGT
TACGACGGATCACCTGGACCAGCGTACCATGCGTATGGCGCTCATCGAGG
CTAGTTTGTTTTTCGCTGGAATCCCGGCTGGTTTGCTTTCGGGTTATTTA
CTGGAGAGTCTCGGATTTGTATCGGTTTTCGGATTAAATATCGGGATCAA
TGTTTGCATTTTGTTGTATGTGATTTTTTACTTGCCAAAGGATTCATCTT
TTAAGTACGAGAAATTACCTGACAAAAACAATCTTTCTAAATCGGAGCAC
TCAGCGGTCGCTGGACTCTCCTCAAGCGGAGAGGAAGATAATATAGATAA
TTTGACTACTGGAAGCTCATCTTACGATAAAATCCAAAAGACGTCGGGCG
AAGACATTACATGCAACCAGCTATTTAATCCTTTCTCGCACTTCGCCCAC
GTCTTTAAAGTTGTCACATCGCCATCATGCCGGAAAATCGTCATCCCAGT
CATATTTTCCTTCGGTTTTTCCGTTTGTGCTATATATGGTGAACTGGTGG
TACAAACACTCTACTTGACTAACCAGCCGTTCGCTTTCAGCCCGCAGACC
ATAGGCTACTATTCGGCAGTACAGAGCGCTATTCGTGGCTGTGGAGTCAT
CATAATGACCCAACTATCCTACCATATTTTCAATTTATCTGACTTCTCCC
TTATCGTAATAGGCATCATAAGTCAAATGGCATGTTACATCTCAATCGGC
TTATCCCGCACAATCTTACCTGTATTCCTGGTCAATATTGCGGGTCTTGG
TATTCCCGTCGGCACGACAACCTTACGTTCTTTAGCAACCAAAAATGTTT
CTTCGGAAAATTATGGCGCTGTTTTGGCGTCTTTGGAAGCAATGGATGTT
CTAGCTGGCGTGTTAACCAATGCATCGACATTATGGACTTATAATGTAAC
ACTTCATGTTTACTCGGGGATCGCGTATTTTGCTTTGGGTGGATTTTCCT
TCTTATCACTGGTCTTCTTGGTTATTGCATATTGTTTGAGACGAGATATT
CATGATAATTCTCTATGATGAATTTGCAACTTTGGTGAAAAATTTGGTAA
GAGTTTTTTCTTAAGATTTAAAGATGGAAGAAAGTATTGGTAAGAATTTA
TTAGTTTCTTTAGATTTAATATGTTTTTAAAACCGAATTTTATACGATTG
TCTTATTTGTATTTCTACGGTTATCCATGATATTCATGACGTAATGTTTT
CTACGAAAAGACCCCGGTTTTTGCCAGTAGTGGCAAAAATTTTATACAAC
TTTTGTCTAGTTTAAATTTGCCATTACCGGCTAAAACCGGGGTATTTCCG
TAGAAAACATTACGTCATGAATATCATGAATAGTAGCTTTTGCTTATCCC
TAGATAGTTGGAAGTCAAGGAAAATAGACAGGTTTCCATTTTTTTGATTG
TTTGTTGCTTTTAATTCCGTCATGGTGATAAATAATTTTATGCTGGAGTA
AAATGGATCAACTTAAATAAAGAATTTCAAGATCCTTATTATATTATTGG
GCTATTCCATTAAATTTCCATACAGGGGGGTGAACGAACCTTTTCAAGTC
AAAAAACTATTTTTGGAAATGTGTTGAAAATGGCATAATTTGCAAAAAGA
CCCTTGGAAAATTTCTTTTTGGACCTACCCCGGTGGGGTGGAGGTCCTAT
AAATTAACCCATGTTCGTTCGTTCGTTAGTGTGTTAGTTACCAGCTTTTC
TCGAGATTGGC

Coding sequence (CDS) from alignment at sc0000205:198827..201437-

>TCONS_00015222 ID=TCONS_00015222|Name=TCONS_00015222|organism=Clytia hemisphaerica|type=CDS|length=1944bp|location=Sequence derived from alignment at sc0000205:198827..201437- (Clytia hemisphaerica)
GCATCATAAGTCAAATGGCATGTTACATCTCAATCGGCTTATCCCGCACA
ATCTTACCTGTATTCCTGGTCAATATTGCGGGTCTTGGTATTCCCGTCGG
CACGACAACCTTACGTTCTTTAGCAACCAAAAATGTTTCTTCGGAAAATT
ATGGCGCTGTTTTGGCGTCTTTGGAAGCAATGGATGTTCTAGCTGGCGTG
TTAACCAATGCATCGACATTATGGACTTATAAGAATCGACAACTTGGTGG
TTCTTCTTACTTCTCGGATCTCTACTACCTTCCGTCTTTACAGTCCTTAT
ATGGGGACCCATCACCGACGTTATTGGGCGCCGTCACGCCATGACCATTG
TGCCTTTCATCAACGGAATCAGGTCTTTGATTTATCTCATCAACTCGTAT
TATATGGATGCACATGTCGGAAAAACGTAAAAATAAAAATAAAAAAAGAT
ACTAACGAGAAAAAAATTACAGTCATGAAATACCGTTTATCAAGCGAACC
GCTGATTTTCTTCTACACCGTAATCTACACTATTAATTATACAGTACTTC
CACAACTTGTTGTCCGAAAAACATGTCATGCGCATGCGTACAATGAAACA
CTTTGCAGCAATGAAGATTTCCTGTCCAAGAACGAAAACATTAAAAAAGC
ATCATAAGTCAAATGGCATGTTACATCTCAATCGGCTTATCCCGCACAAT
CTTACCTGTATTCCTGGTCAATATTGCGGGTCTTGGTATTCCCGTCGGCA
CGACAACCTTACGTTCTTTAGCAACCAAAAATGTTTCTTCGGAAAATTAT
GGCGCTGTTTTGGCGTCTTTGGAAGCAATGGATGTTCTAGCTGGCGTGTT
AACCAATGCATCGACATTATGGACTTATAAGAATCGACAACTTGGTGGTT
CTTCTTACTTCTCGGATCTCTACTACCTTCCGTCTTTACAGTCCTTATAT
GGGGACCCATCACCGACGTTATTGGGCGCCGTCACGCCATGACCATTGTG
CCTTTCATCAACGGAATCAGGTCTTTGATTTATCTCATCAACTCGTATTA
TATGGATGCACATGTCGGAAAAACGTAAAAATAAAAATAAAAAAAGATAC
TAACGAGAAAAAAATTACAGTCATGAAATACCGTTTATCAAGCGAACCGC
TGATTTTCTTCTACACCGTAATCTACACTATTAATTATACAGTACTTCCA
CAACTTGTTGTCCGAAAAACATGTCATGCGCATGCGTACAATGAAACACT
TTGCAGCAATGAAGATTTCCTGTCCAAGAACGAAAACATTAAAAAAGCAT
CATAAGTCAAATGGCATGTTACATCTCAATCGGCTTATCCCGCACAATCT
TACCTGTATTCCTGGTCAATATTGCGGGTCTTGGTATTCCCGTCGGCACG
ACAACCTTACGTTCTTTAGCAACCAAAAATGTTTCTTCGGAAAATTATGG
CGCTGTTTTGGCGTCTTTGGAAGCAATGGATGTTCTAGCTGGCGTGTTAA
CCAATGCATCGACATTATGGACTTATAAGAATCGACAACTTGGTGGTTCT
TCTTACTTCTCGGATCTCTACTACCTTCCGTCTTTACAGTCCTTATATGG
GGACCCATCACCGACGTTATTGGGCGCCGTCACGCCATGACCATTGTGCC
TTTCATCAACGGAATCAGGTCTTTGATTTATCTCATCAACTCGTATTATA
TGGATGCACATGTCGGAAAAACGTAAAAATAAAAATAAAAAAAGATACTA
ACGAGAAAAAAATTACAGTCATGAAATACCGTTTATCAAGCGAACCGCTG
ATTTTCTTCTACACCGTAATCTACACTATTAATTATACAGTACTTCCACA
ACTTGTTGTCCGAAAAACATGTCATGCGCATGCGTACAATGAAACACTTT
GCAGCAATGAAGATTTCCTGTCCAAGAACGAAAACATTAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008511XLOC_008511Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015222-proteinTCONS_00015222-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015222-exon-sc0000205-1575043694:201210..201437TCONS_00015222-exon-sc0000205-1575043694:201210..201437Clytia hemisphaericaexon
TCONS_00015222-exon-sc0000205-1575043694:200625..200812TCONS_00015222-exon-sc0000205-1575043694:200625..200812Clytia hemisphaericaexon
TCONS_00015222-exon-sc0000205-1575043694:198827..199875TCONS_00015222-exon-sc0000205-1575043694:198827..199875Clytia hemisphaericaexon
TCONS_00015222-exon-sc0000205-1510915933:201210..201437TCONS_00015222-exon-sc0000205-1510915933:201210..201437Clytia hemisphaericaexon
TCONS_00015222-exon-sc0000205-1510915933:200625..200812TCONS_00015222-exon-sc0000205-1510915933:200625..200812Clytia hemisphaericaexon
TCONS_00015222-exon-sc0000205-1510915933:198827..199875TCONS_00015222-exon-sc0000205-1510915933:198827..199875Clytia hemisphaericaexon
TCONS_00015222-exon-sc0000205-1491911889:201210..201437TCONS_00015222-exon-sc0000205-1491911889:201210..201437Clytia hemisphaericaexon
TCONS_00015222-exon-sc0000205-1491911889:200625..200812TCONS_00015222-exon-sc0000205-1491911889:200625..200812Clytia hemisphaericaexon
TCONS_00015222-exon-sc0000205-1491911889:198827..199875TCONS_00015222-exon-sc0000205-1491911889:198827..199875Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000205supercontigsc0000205:198827..201437 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.159259	1.21813	0.960045	0.96479	1.15211	0.941127	0	0.477165	0	0	0	0	0	0	0	0	0.899393	0	0.814372	5.85151e-08	0	0	0	0	0.695223	0.952011	0	0.000173413
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015222 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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