TCONS_00015252 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015252
Unique NameTCONS_00015252
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1056

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015252 ID=TCONS_00015252|Name=TCONS_00015252|organism=Clytia hemisphaerica|type=transcript|length=1056bp
GGCCTTTAAATTTCGTGTGCAGTCACatggaaatcgaaagtgaaactgtt
TGCACAATTTTCGTTCAAATTTCTTTCAGTTCGTGCACTGCTGCAGCTTC
AGACCAACTTTGGTGTTTCTTCatattatttatttaattttttttcactg
aaatctCGAAGAATGGACTTGGAAAGTAAAGTTGAAAGTTTTAAAAAAGA
TGGCTATGTTGTTCTGGAAAGTTTTCTCCAAGAGGAAGAATGTGATCAAT
TGCGGTCAAGATCAAAAGAGTTGATCGAAGAAATGGATTTGAGCACTCAC
CCAAAGACTGTGTTCTCCACCACAAATCagCAAAACGATGATTACTTTAT
GACAAGTCAAGACAAAATTCGGTTTTTCTTTGAAGAGAATGTAATAGATG
AAAAAGGAGTATTGAATCGACCGAAACATCTATCCATCAATAAAATTGGT
CATGGTTTATGTTTCAAAGATGAAGGTTACAAGAAAGCAACATTTACTGA
CACAATCAAAGAATTTGTAAAACGTCTTGATTTTAAGGAGCCAGCTATCG
TTCAAAGTATGGTCATATTCAAGCAACCTGGAATTGGCGGCGTTGtGACT
CCTCACGAAGATGGCACATTTTTGATGAATGAACCGTCGAAGTTGATTGG
TCTATGGATTGCGTTAGAAGAtgcagaaattgaaaatggATGCCTATGGT
TTATCCCTGGAACTCATAAAGACAGGACTTCATTAAGGATGATTCGAAAC
CCAGACAAGGATGGTCCTCCAACAGTTTTTCGTGGTGACAGAGATACTTA
TGATGATTCTTTGTTCAAAGCAGTTCCAGtcaaaaaagGGTCGGCCATAA
TCATCCATGGTCACGTGGTTCATAAAAGTGAAAAGAATCTTTCAAATCGG
TCACGTGAGATTTACACATATCATATTGCTGAAACACACCAATCTAAGTG
GCTAAATGAAAATTGGCTACAAGAAACTGAAGATTACTCATTCATGAAAC
TGTACGAGAACTGATAAATATGGCTATATTGACgtatcaaaaatattgaa
tctgga
Run BLAST on NCBI

transcript from alignment at sc0000208:49313..57868+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015252 ID=TCONS_00015252|Name=TCONS_00015252|organism=Clytia hemisphaerica|type=transcript|length=8556bp|location=Sequence derived from alignment at sc0000208:49313..57868+ (Clytia hemisphaerica)
GGCCTTTAAATTTCGTGTGCAGTCACatggaaatcgaaagtgaaactgtt
TGCACAATTTTCGTTCAAATTTCTTTCAGTTCGTGCACTGCTGCAGCTTC
AGACCAACTTTGGTGTTTCTTCatattatttatttaattttttttcactg
aaatctCGAAGAATGGACTTGGAAAGTAAAGTTGAAAGTGTAAGTATCTT
TTCAACTcgtttgtcattcttttttatttttattcaggACTTTGTTTGGT
ATGATTTAACCCCcttcagtgtagctggaacctccaTATTCCAGGATTAT
AGAAAAAGCTATAGAGTCGAGTCGCCAGAGCACGAACGGCCccacttgaa
aaaaacaactaaaaacaaacttctatagaatTTCCCttgtgcagcagaat
cctcaaaccatcccttgcaatctctccaaaaattaaaataaacagagcac
tagaacaacaccaaactgattttgaacgaggccaagtaaaaaaatcacga
aattcgggatttttgtaaacatggctgatcgcaagagaaaatgtttttta
taagaaaatttgcgcaagaagagttctgaaaatgactttcctcttttaaa
aacctgttaTCTTCCATCACACAANagttctgaaaatgactttcctcttt
taaaaacttgttatcttccatcacacaaaatttcattgaaacatgttagc
tcattaattcaaaatcaatagaaacatatcaccagtagttgatataaaaa
agtTTCCAGTCTGCGAACGATCCgaacaccatattcaaaatgaagacatt
acaacgtcaaaacatttgaaagcgCTGGCGATCTCGATTAAAATAGAAGA
CACTACATTGTCGCGCTTTTTgatgagcaaaacttgaaaaagaaaaacaa
aaaaatggacgacaagaaaatatttacaaaaataaacaggttagtaaaac
gctaaagttcttataaaaaagacacttttttggtgaaaaagcgcatggtt
ttgaaaagttcaaatacccctgtatcatcttggaagagagttaaagtatt
acctgcgagcagagctctaattttttctttcaaaagatcgttcGCGCACT
GGTTCCTTGTTCGCGGACTTGGTCCGAGTAGCGCTCGCTTCTACGgctta
ttattccaagaagacACTTTCAAACAAAGTGATAACAAAttgaaagaagg
acttcaacCTTGTCTACAagatggtcaaaaaggatttatNCATAGCTTCA
GCCCCCCCTTACTTTTTggggggggctaagaaatattttggcctttaaag
agcctgggggctaaaattaccaaaatatttggggggacctagattgttgg
ggggaACCTAGATAatctgactgagactctgggggctgtttagactggag
tcgtttataatgcgtgtaatactaataataccaatactaacaataataat
aataataataataatacgggatttagtttgtataaacgactggaagaatc
cggtgttccagccttatagatacaggggctagcNTATTAACCAATCGATT
AGGTATCGGAATttctatgggagttcttttccgagatttgtaaaatagct
aaatcagaaaaaaaacttttcctgggggtttgaggaataaacacaactgt
tatcattcgttttttatttaaccgtaTTTAATAGCTTCAGCCCCCCCCTT
ACTTTTGGGGGGGGGctctaagaaatattttggcctttaaagagcctggg
ggctaaaattaccaaaatatttggggggacctagattgttggggggaACC
TAGATAATCTGACTGAGANaattgcaatattgacacttttcttttgtttg
gagttagtgcacaaaggtttctagacgactaaaattgttccattcattac
tttttgctttatttctaactactatgtataaattagtcgtctagcttgct
agactaggggctgttcagctaattCTAAAAGATGTCTTATCTTACTGTTA
AATcgaatataaaaagcaaaagatttgtgaacataaatattaatacaagt
aaaatttagttttcatttatcagtaccgTACtcacatatattttttattg
acttctctctacgggggcgggtggaaaatatttttgttttttccccaAGT
GTTAGGGGgcctagcacaaggcaattttttggggggagctaaattgttgg
ggggaccttactttgttggggggagctagaaacctggctgaagctatggc
CCCGGGCTAAactccattttcaaatttatcccgcctcCGTAGTTACTCCT
CTTACAGACGATAGGATTGTTAAGCTTGANtatatttaaatttgcgctca
aaaatacgttaataatattcaaatatactatttgtatctctcagaaaata
aacactcaCAGAatgacatagtttatcatttagacTACCCCcatgtttgg
accattctaGCGTGGTCgaaaaatagggcggaaactaagtagcactctca
gtgcaagattgctgcctcatctttattcgcccgcacgaaaacgagctaag
tcatttttttctcgcgcgctcaaggggaaaaggtaagtgatcgatattct
ttgaagaaaaaacgtcagaaacaaacccaaagaccaaaagatgtattttg
ttgttgagaatcgatcctgtgaagatgaaaaaatttcNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNattcggaacgctgaaaaactctaatttcgatcttccttttaagg
taaagaggttgcgagatttgggctagcgaggcaaaaatcgctaaaaaact
ggtaaaatcgtaatcctcaaaaattgaagttccagcctcactgccCTTCT
GCTTTTTTACATGACCCCATGGCCATGCGTCATGGCCATGCTGCATGCAT
GTTAGCGTACTGTCAATGCaatggctctaacttgggactatctaaCAAAA
CATGCGACAGCCATTCGGCCatcatttcaccaaacctccaaagttaCTAA
GGAGATAATAACACACTACACACTCCCACAAACCTATAGGAAAGGGTTGG
ATATTATCTCTGTTTTATCTTGAAATTGAATTCTTCTGTAAAACAATGAT
AGTGACTCCAGAAGCCACGCaacttttttgatgtcaaaccaaatgtttca
tttttccgtgaactttgaacccttctaattttttttctatgtatgctaaa
gtgtctcggtttttactaaaagaaagccaGTGAttttagctttccagcgg
tatataacactgtggatacaggctagacggcaaattggtaaagtgCCGAA
TGGCAAATgtttttgcaacatttcaaAAGTTGTCTGCTACAGGAAAAAAG
TTGTAACTATTGatgaacaaatgtttctggaaatggaggaaaacaCAGTT
Gaaactttgtatttttattaatagaaaaaaattcaaaaatcacattcgct
aaTTCTAGCTctttccagacggtgtcaatcgaacaacttttAAGAACAAA
AACCCCAACCAAACCAAACGTAATGGAATGCGATTGAAtaattgtcgaac
gtaatcgaatctcaatcaaacggctgattcctgggtaatattcaattgtg
ttgcattgcgttcgagtaaggttacattttggttcgattgatagttgact
attttcgattggttcaattgattgtcaattacattcgattaaCCTTTGAT
TTCATTTGATTAAAATTATGTTctatgagtttgattgcgatctAACTTCG
TTAGGGCTTTTTAGTGTGGGCGGCCCAGCGCTTAAGTACCGTACAAagaa
agcgaataaaatctaatacaattgaatcaatggaacgtaatcgaacataa
tcgaatacaatcaaagGTAAtggaagcaatcgaacagcaaatcctgggta
atgatattcgattacgattcgattgcattcaacaatctcattttctttct
ttttcaaagctctacaagataagataggttttgaaaaaaatatcaaaatt
tgagaaatcttctggagttgctaacaATGAAACGTATGATTAAAGTGAAG
ATGGCTGGTGAAGTTAAGGATGAAATTAGAATGAAATTGTGTCATTTTTA
CGAACTTCCTGActcaaaataatcagaaaattaagaaaaattatcattCA
GTCAGACGATGCAAACATAAGTTATTTGTGGTTATGGCCTAGTAacataa
ataaaaagaacatactaaaatttgagaggATTTGTTCAGCAAAACTtgag
aaaagctcaaaaaaccaactttccctaagcaAACACAGGTTAAAACAGGT
CTGTTTACCTTCAGAgacataaaaaaaattctataacaCTCCAAGGAGTA
AAGTTCACAAAAGTGTAAAGTTCTTAGAAATTGCATTTGCCAAAGTTGAG
TTATGGGTACTCAAAAAGTTACGGACGGGATATTGTATGATTTTTCTGCA
AATCAACCCTAAGCTATATACTTTTTCTTGTTAATCTTTTCTGTTGAAAC
TTCTTTCCTTTCAACATTTAGTTTAAAAAAGATGGCTATGTTGTTCTGGA
AAGTTTTCTCCAAGAGGAAGAATGTGATCAATTGCGGTCAAGATCAAAAG
AGTTGATCGAAGAAATGGATTTGAGCACTCACCCAAAGACTGTGTTCTCC
ACCACAAATCaggttttttttatgttttatgatAGTTTTTCATGCTTATA
TACAATGTTGATTTTCAGGTACTGCTACATTGCGTGAAgattgtataaaa
aattgttttttatttcttaaaagtttaaactgcaaaatcagataaaaaaa
taGACCTAGCATTATCGGATACAATACCCATGTTAAGTGGCTAAAGTAAG
CAAAAATCCAAAGACCAGAATATATTTTTTACATCACTTACTCTTGAATG
GTGACATTGAAAAACAACACACAAGAGTAAATGATTTTCAGCTATAAAGT
CGTACtagtatttttgattttgttgtacAAAAAACCAAACATATAGGAAG
ATTGCTTTTGGTATATAATACCAAttaagtttcaatttttttataatttt
gagaatccatccccTGGTGTATACAGTCTAATTGATATCAAAGTATACAG
CAAATATCAATAAATTAACAATATTGAATAGATTTTGGGGAAAAAATTCT
CACTAGTCTTTTTTCTAGAAAAACAACATCACTGGCCATGATGAATACTT
CATGAAAAGCCAAGACAAAATCCGGTTTTTCTTTGAAGAATTTGCATTCA
CTGAAGGTAGACTTTTCTTGCATCATATCTTTGATTTTCTATGAGGATTA
TGGCtttttttggaatgtttttttctttcaaagaaaagtCAGATTTTGTT
CTTGCTTGTCAGCCTATTGTTTTATTCATTGCGCTGAAATTCtttctaaa
aatattgaaatgagtCACAATTTTTAAGCAAATTTATCATAATAATATGA
TAAACTAAAGGGTAAATTAAACATTTATAAGACTATGATTTTTGTCTACC
GACCCTATCCAGCTATCCTGGGAATCTGATCCAAGGGTACTTCCATATCa
atgaaacttttgttgtgTTCAGTGtctacttgatttttttttttaattta
gaaaatcaataCCTGCCGTGATGAGTATTTTATGAATAGCCAAGATAAAA
TCagatttttctttgaagaattTGCTTTCAGTGAAGGTACCATTTCCAAT
TAAAGATATCATTTCTGAATTTTAGCAAAACGATGATTACTTTATGACAA
GTCAAGACAAAATTCGGTTTTTCTTTGAAGAGAATGTAATAGATGAAAAA
GGTATGACAGTCTATGATATAGCAAAGAAGTAAAATTAATCTGCTTTTAT
GTTAGGATTTACTTCAAACAttatttttattcagtttttcgTGGTATTTT
CTTTAAGATTTTCTgttgttttagatattttattcCCTATAAAATGAAGA
CggtattttgaaatttgtttccTAATATCCAATTAATTCCAGGAGTATTG
AATCGACCGAAACATCTATCCATCAATAAAATTGGTCATGGTGAgatata
tttaattttcatacTCCCtggtttaaaatcttttttgtatgaaaacaaTT
CTAATAAATAGTGTCAATCGAACACAAAGCGTTGATATATAAAACATTTA
GTTGAGGGGAATTCCATCTTgagcaacaaaataaaaaatcagatATGTAT
TTCGCTTCCTTTAAGGTTTATGTTTCAAAGATGAAGGTTACAAGAAAGCA
ACATTTACTGACACAATCAAAGAATTTGTAAAACGTCTTGATTTTAAGGA
GCCAGCTATCGTTCAAAGTATGGTCATATTCAAGGTAACACTATCTTTAA
TATTTGTGTTATGCGAAGGGGATATTTACATCTAAATAGATAGAGCCTTC
AAATCCTGGGTTGAGTTCGGAATTATTTTCCGCTCTTGATGATATTGAAT
TCACTCACAGTCAACCATACCCTCTGGTCAACAAAGCTTTCTAGTTATTC
TGAAATTCAGTCTGGAAAATCATAATGAAATTTAATAGTTTGGTCTTCTG
TCATCCACTTATCTCATCTCCTAAACTGAAACCCATGAGCACCTGATTGA
TAATTTACTGACATTTTTTTGTACTCAAGTCGTTACgtattttcaatgaa
atatttctttcataacttgaatgattatttttgtttgttttacagCAACC
TGGAATTGGCGGCGTTGGTAAAAGAATTTTACTATGTtgttgttttactt
ttttattagcgacaaatttaaattattttgaaataaatagaagGAATTTT
TAGACTGAGCTCGTACCTAATTAGGATTacttaattttgtttttaaacga
TTTGAGTCTtaaaagttttgatttgataATTCTCAACTTCATAATTAATC
AAACTGAAAACCCCTATAGAGAAGGGTCTGTTTGTATTAAAAGATttaaa
ttgttttgtcagtGACTCCTCACGAAGATGGCACATTTTTGATGAATGAA
CCGTCGAAGTTGATTGGTCTATGGATTGCGTTAGAAGAtgcagaaattga
aaatggATGCCTATGGTTTATCCCTGGAACTCATAAAGGTTTCACCCTCT
ATCTTCACTTAGGGTTTTTTATGCACACACTTCAAATACTAAGTTAGAGA
ATTTTGATTTGGAAGACGAACAAAATTTTACATTTAACAGTTATGAATTG
TATTAGTTTTCATCGGTTCTcaagaaacaaaattattcCTTTTGTCAGAG
ATTCTTTTCTCCCCTAAATTTCATTTCtgtttttcctttgtttttcaTCA
AACGACCCATCAAGCATAAGACTGTAAGGTTTTTGAAATAGGTTGAGAAA
ATGTTCTATAACTACATCCCAAtattgtgaatattttttaatgaacCTAC
AAGTTTAACACTGGGAGACTGAGAGTTAAACACTCCTCCATAAACTTTAA
CTTCAACACAAGTAAAATCTTTACTCACACCGATGCTTGGTCAAGCAGGG
GGAAGCTGATAGATCTATGTTGTCAAATTACATTTATATTTTAGACAGGA
CTTCATTAAGGATGATTCGAAACCCAGACAAGGATGGTCCTCCAACAGTT
TTTCGTGGTGACAGAGATACTTATGATGATTCTTTGTTCAAAGCAGTTCC
AGtcaaaaaaggttttgttttttctggTGGTTTAGAGCGAGCACTATATT
TATTGTTTGtgtatgattttttattgtttatatcAGTATTAGAGAAGATG
TTTCTCTTCCCTCACGCTATTTACTAGAACCCAGGAAATTATCCAGATTT
TCAGGCTctcgtttttttatttatttttttctagctTTTATGTTTCAAGC
AGTTGTTTACATCcataatttatactttttggaTCACGAGCTCTAAGATA
AGTAAGGTTTCCAAAATTCTGATTTTAGGGTCGGCCATAATCATCCATGG
TCACGTGGTTCATAAAAGTGAAAAGAATCTTTCAAATCGGTCACGTGAGA
TTTACACATATCATATTGCTGAAACACACCAATCTAAGTGGCTAAATGAA
AATTGGTGAGTTGATTTATACCTAAATTAAATTTGGCCTTTTGGCTTTAT
TCTTTGGGGCCCTAGCCAATTTTTTACGTTAATTGATTAATAAGTAAGTT
GGGAGTTTGTATAATGGTTAGAAAGACTATCCACTTTTCACCACACCTCT
TTTCTTAACCTGACCCCTAAGTAAGTGCAAGTACTTTGAATGTATTTAAC
TAAAATATCAAACCAACAATACTATGATCACACATTCGTATTAATTTGTT
AAATTTATCTTTTTGCCATTTGATAGACAAGCTAAAAAATCAAGGTTTTT
TTGTTCCATTTTTAGGCTACAAGAAACTGAAGATTACTCATTCATGAAAC
TGTACGAGAACTGATAAATATGGCTATATTGACgtatcaaaaatattgaa
tctgga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008531XLOC_008531Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015252-exon-sc0000208-1491911889:49313..49501TCONS_00015252-exon-sc0000208-1491911889:49313..49501Clytia hemisphaericaexon
TCONS_00015252-exon-sc0000208-1510915933:49313..49501TCONS_00015252-exon-sc0000208-1510915933:49313..49501Clytia hemisphaericaexon
TCONS_00015252-exon-sc0000208-1575043694:49313..49501TCONS_00015252-exon-sc0000208-1575043694:49313..49501Clytia hemisphaericaexon
TCONS_00015252-exon-sc0000208-1491911889:53934..54074TCONS_00015252-exon-sc0000208-1491911889:53934..54074Clytia hemisphaericaexon
TCONS_00015252-exon-sc0000208-1510915933:53934..54074TCONS_00015252-exon-sc0000208-1510915933:53934..54074Clytia hemisphaericaexon
TCONS_00015252-exon-sc0000208-1575043694:53934..54074TCONS_00015252-exon-sc0000208-1575043694:53934..54074Clytia hemisphaericaexon
TCONS_00015252-exon-sc0000208-1491911889:55138..55213TCONS_00015252-exon-sc0000208-1491911889:55138..55213Clytia hemisphaericaexon
TCONS_00015252-exon-sc0000208-1510915933:55138..55213TCONS_00015252-exon-sc0000208-1510915933:55138..55213Clytia hemisphaericaexon
TCONS_00015252-exon-sc0000208-1575043694:55138..55213TCONS_00015252-exon-sc0000208-1575043694:55138..55213Clytia hemisphaericaexon
TCONS_00015252-exon-sc0000208-1491911889:55405..55452TCONS_00015252-exon-sc0000208-1491911889:55405..55452Clytia hemisphaericaexon
TCONS_00015252-exon-sc0000208-1510915933:55405..55452TCONS_00015252-exon-sc0000208-1510915933:55405..55452Clytia hemisphaericaexon
TCONS_00015252-exon-sc0000208-1575043694:55405..55452TCONS_00015252-exon-sc0000208-1575043694:55405..55452Clytia hemisphaericaexon
TCONS_00015252-exon-sc0000208-1491911889:55628..55746TCONS_00015252-exon-sc0000208-1491911889:55628..55746Clytia hemisphaericaexon
TCONS_00015252-exon-sc0000208-1510915933:55628..55746TCONS_00015252-exon-sc0000208-1510915933:55628..55746Clytia hemisphaericaexon
TCONS_00015252-exon-sc0000208-1575043694:55628..55746TCONS_00015252-exon-sc0000208-1575043694:55628..55746Clytia hemisphaericaexon
TCONS_00015252-exon-sc0000208-1491911889:56108..56129TCONS_00015252-exon-sc0000208-1491911889:56108..56129Clytia hemisphaericaexon
TCONS_00015252-exon-sc0000208-1510915933:56108..56129TCONS_00015252-exon-sc0000208-1510915933:56108..56129Clytia hemisphaericaexon
TCONS_00015252-exon-sc0000208-1575043694:56108..56129TCONS_00015252-exon-sc0000208-1575043694:56108..56129Clytia hemisphaericaexon
TCONS_00015252-exon-sc0000208-1491911889:56375..56500TCONS_00015252-exon-sc0000208-1491911889:56375..56500Clytia hemisphaericaexon
TCONS_00015252-exon-sc0000208-1510915933:56375..56500TCONS_00015252-exon-sc0000208-1510915933:56375..56500Clytia hemisphaericaexon
TCONS_00015252-exon-sc0000208-1575043694:56375..56500TCONS_00015252-exon-sc0000208-1575043694:56375..56500Clytia hemisphaericaexon
TCONS_00015252-exon-sc0000208-1491911889:56957..57073TCONS_00015252-exon-sc0000208-1491911889:56957..57073Clytia hemisphaericaexon
TCONS_00015252-exon-sc0000208-1510915933:56957..57073TCONS_00015252-exon-sc0000208-1510915933:56957..57073Clytia hemisphaericaexon
TCONS_00015252-exon-sc0000208-1575043694:56957..57073TCONS_00015252-exon-sc0000208-1575043694:56957..57073Clytia hemisphaericaexon
TCONS_00015252-exon-sc0000208-1491911889:57341..57467TCONS_00015252-exon-sc0000208-1491911889:57341..57467Clytia hemisphaericaexon
TCONS_00015252-exon-sc0000208-1510915933:57341..57467TCONS_00015252-exon-sc0000208-1510915933:57341..57467Clytia hemisphaericaexon
TCONS_00015252-exon-sc0000208-1575043694:57341..57467TCONS_00015252-exon-sc0000208-1575043694:57341..57467Clytia hemisphaericaexon
TCONS_00015252-exon-sc0000208-1491911889:57778..57868TCONS_00015252-exon-sc0000208-1491911889:57778..57868Clytia hemisphaericaexon
TCONS_00015252-exon-sc0000208-1510915933:57778..57868TCONS_00015252-exon-sc0000208-1510915933:57778..57868Clytia hemisphaericaexon
TCONS_00015252-exon-sc0000208-1575043694:57778..57868TCONS_00015252-exon-sc0000208-1575043694:57778..57868Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000208supercontigsc0000208:49313..57868 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
44.7332	42.5136	51.6806	54.6193	15.3335	10.7135	12.5814	13.5049	15.7951	14.1841	15.543	13.0017	10.8799	12.9312	16.6811	18.6613	17.2458	12.1441	10.0519	8.74432	11.884	15.3673	20.0224	19.8896	14.657	12.508	22.9293	15.7255	23.7306	23.5321
Blast
[Close]
BLAST of TCONS_00015252 vs. Swiss-Prot (Human)
Match: PHYD1 (Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Homo sapiens GN=PHYHD1 PE=1 SV=2)

HSP 1 Score: 287.73 bits (735), Expect = 1.138e-94
Identity = 135/284 (47.54%), Postives = 185/284 (65.14%), Query Frame = 1 
Query:  175 SKVESFKKDGYVVLESFLQEEECDQLRSRSKELIEEMDLSTHPKTVFSTTN------QQNDDYFMTSQDKIRFFFEENVIDEKGVLNRPKHLSINKIGHGLCFKDEGYKKATFTDTIKEFVKRLDFKEPAIVQSMVIFKQPGIGGVVTPHEDGTFLMNEP-SKLIGLWIALEDAEIENGCLWFIPGTHKDRTSLRMIRNPDKDGPPTVFRGDRDTYDDSLFKAVPVKKGSAIIIHGHVVHKSEKNLSNRSREIYTYHIAETHQSKWLNENWLQETEDYSFMKLY 1005
            S+++ F++DG++VLE FL  EEC  ++ R  E++ EMD+  H +T FST        Q + DYF++S DKIRFFFE+ V DEKG    P   SINKIGH L   D  +K  T +  ++   + L  + P +VQSM IFKQP  GG V+PH+D +FL  EP  +++G+WIA+EDA +ENGCLWFIPG+H    S RM+R P    P T F G     D+SLF   PV++G+ ++IHG VVHKS++NLS+RSR+ YT+H+ E   + W  ENWLQ T +  F +LY
Sbjct:    7 SQLQKFQQDGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQLRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHSFKVQTLARSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVLGVWIAVEDATLENGCLWFIPGSHTSGVSRRMVRAPVGSAPGTSFLGSEPARDNSLFVPTPVQRGALVLIHGEVVHKSKQNLSDRSRQAYTFHLMEASGTTWSPENWLQPTAELPFPQLY 290
The following BLAST results are available for this feature:
BLAST of TCONS_00015252 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PHYD11.138e-9447.54Phytanoyl-CoA dioxygenase domain-containing protei... [more]
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