TCONS_00015277 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015277
Unique NameTCONS_00015277
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015277 ID=TCONS_00015277|Name=TCONS_00015277|organism=Clytia hemisphaerica|type=transcript|length=430bp
gtgtcagctgggttgctgtctgttttttttttgctgtgtttttgagaaat
gtttcatttgaatgATGCTGTGTTGCAGCTTGCAGAAATAGCACGGAAAT
CATGACAACTTATTTCTCCTAAAACGAAGAGGTTTTTTCTTTGAGTGACA
TTCTCGTTTTCAAACGATTCAATTTCGTTTTTTGCTTTTCAACTTCTTTA
AATTCCATCACTAAAGATATGGGGACAGGTAGTTCCGAAAGTTTCACGTA
TCTAAAATTGACACCGATAATCTTCGAAATGTCCGTTGTGTATTTTCGCA
TCTCGTGCGCATGCTTCAGGTCGATTgattgaatgaaattttcaaaatgg
tggatattATGTTTCCATTGGTCAATTAATTGACGCCATTCTTGACGTAA
GCTGGCTTGCTTTTGAAGAAGCATTTCTGA
Run BLAST on NCBI

transcript from alignment at sc0000208:177807..178304-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015277 ID=TCONS_00015277|Name=TCONS_00015277|organism=Clytia hemisphaerica|type=transcript|length=498bp|location=Sequence derived from alignment at sc0000208:177807..178304- (Clytia hemisphaerica)
GTGTCAGCTGGGTTGCTGTCTGTTTTTTTTTTGCTGTGTTTTTGAGAAAT
GTTTCATTTGAATGATGCTGTGTTGCAGCTTGCAGAAATAGCACGGAAAT
CATGACAACTTATTTCTCCTAAAACGAAGAGGTTTTTTCTTTGAGTGACA
TTCTCGTTTTCAAACGATTCAATTTCGTTTTTTGCTTTTCAACTTCTTTA
AATTCCATCACTAAAGATATGGGGACAGGTAGTTCCGAAAGTTTCACGTA
TCTAAAATTGACACCGATAATCTTCGAAATGTCCGTTGTGTATTTTCGCA
TCTCGTGCGCATGCTTCAGGTCGATTGATTGGATGAAACNTTCGAAATGT
CGGTTGTGTATTTTCGCATCTCGCGCGCATGCTTCAGGTCGATTGATTGA
ATGAAATTTTCAAAATGGTGGATATTATGTTTCCATTGGTCAATTAATTG
ACGCCATTCTTGACGTAAGCTGGCTTGCTTTTGAAGAAGCATTTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008544XLOC_008544Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015277-exon-sc0000208-1575043694:177986..178304TCONS_00015277-exon-sc0000208-1575043694:177986..178304Clytia hemisphaericaexon
TCONS_00015277-exon-sc0000208-1575043694:177807..177917TCONS_00015277-exon-sc0000208-1575043694:177807..177917Clytia hemisphaericaexon
TCONS_00015277-exon-sc0000208-1510915933:177986..178304TCONS_00015277-exon-sc0000208-1510915933:177986..178304Clytia hemisphaericaexon
TCONS_00015277-exon-sc0000208-1510915933:177807..177917TCONS_00015277-exon-sc0000208-1510915933:177807..177917Clytia hemisphaericaexon
TCONS_00015277-exon-sc0000208-1491911889:177986..178304TCONS_00015277-exon-sc0000208-1491911889:177986..178304Clytia hemisphaericaexon
TCONS_00015277-exon-sc0000208-1491911889:177807..177917TCONS_00015277-exon-sc0000208-1491911889:177807..177917Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000208supercontigsc0000208:177807..178304 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.160533	0.156545	0	0.355654	0	0.408802	0.20639	0	0.442216	0.198471	0	0.516042	0.678868	1.08169	0.333737	0.0978241	0.71287	1.08684	0	0.535718	1.65105	1.98634	0.255118	1.07761	0.532281	0.442382	0	0	0.178179	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015277 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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