TCONS_00015302 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015302
Unique NameTCONS_00015302
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length651

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015302 ID=TCONS_00015302|Name=TCONS_00015302|organism=Clytia hemisphaerica|type=transcript|length=651bp
CTTTTTACTGTTGTACAAACAATGATGATGAATTTCTGAAATCATTTCTT
ACAGAACTAAAAGGGCGTATGTACTGTGCAGTCAAATAAAGAGCAGTGAC
TGCAATGAAGAATGTTGATATTAAGAAATGGGAAGCTTCGAGAAAAAGAA
CTTTCATTgtattttgtttctttcttgGCTTGAATGGTACCGAATATTCA
ATCGTGGTGCCGTCTTTGTTGACTTATTTACGTGACGTCATCAAggtgaa
agatgaaaaaacatGGTTCGCATTGATAACGGCAGTTTATTGGATTTCTT
CAATGATTGGCAATCTAACCATCACTAAATATGCAGATCGAACTCGAAAT
ATCAAGAGGTGTTTCTACTTTGGGTTTTTTGTGgtttcacttggaaattt
tttgtaCACTATACCTTTCTCCGTGGTTTTCCCGTTTGTGGGACGGTCTT
TACAAGGATTTGCCGATGCTATGTTTACTGTCAGCTTTGGCGAAGTATTA
AGAGTGTACCCAGAAGATGAAGCTGTTGAGAAAGTGTCAATTCTTGTATC
AAGTTATTATGTAACTTTTCTAATTGGACCTGTCTTTAGTTTAATATTCA
GTAACGTGGATATTCATTTGATGGGCATTCATCTGACGATTACAAATTTA
C
Run BLAST on NCBI

protein sequence of TCONS_00015302-protein

>TCONS_00015302-protein ID=TCONS_00015302-protein|Name=TCONS_00015302-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
MKNVDIKKWEASRKRTFIVFCFFLGLNGTEYSIVVPSLLTYLRDVIKVKD
EKTWFALITAVYWISSMIGNLTITKYADRTRNIKRCFYFGFFVVSLGNFL
YTIPFSVVFPFVGRSLQGFADAMFTVSFGEVLRVYPEDEAVEKVSILVSS
YYVTFLIGPVFSLIFSNVDIHLMGIHLTITNL
Run BLAST on NCBI

transcript from alignment at sc0000208:71644..72294

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015302 ID=TCONS_00015302|Name=TCONS_00015302|organism=Clytia hemisphaerica|type=transcript|length=651bp|location=Sequence derived from alignment at sc0000208:71644..72294 (Clytia hemisphaerica)
GTAAATTTGTAATCGTCAGATGAATGCCCATCAAATGAATATCCACGTTA
CTGAATATTAAACTAAAGACAGGTCCAATTAGAAAAGTTACATAATAACT
TGATACAAGAATTGACACTTTCTCAACAGCTTCATCTTCTGGGTACACTC
TTAATACTTCGCCAAAGCTGACAGTAAACATAGCATCGGCAAATCCTTGT
AAAGACCGTCCCACAAACGGGAAAACCACGGAGAAAGGTATAGTGtacaa
aaaatttccaagtgaaacCACAAAAAACCCAAAGTAGAAACACCTCTTGA
TATTTCGAGTTCGATCTGCATATTTAGTGATGGTTAGATTGCCAATCATT
GAAGAAATCCAATAAACTGCCGTTATCAATGCGAACCatgttttttcatc
tttcaccTTGATGACGTCACGTAAATAAGTCAACAAAGACGGCACCACGA
TTGAATATTCGGTACCATTCAAGCcaagaaagaaacaaaatacAATGAAA
GTTCTTTTTCTCGAAGCTTCCCATTTCTTAATATCAACATTCTTCATTGC
AGTCACTGCTCTTTATTTGACTGCACAGTACATACGCCCTTTTAGTTCTG
TAAGAAATGATTTCAGAAATTCATCATCATTGTTTGTACAACAGTAAAAA
G

Coding sequence (CDS) from alignment at sc0000208:71644..72294

>TCONS_00015302 ID=TCONS_00015302|Name=TCONS_00015302|organism=Clytia hemisphaerica|type=CDS|length=546bp|location=Sequence derived from alignment at sc0000208:71644..72294 (Clytia hemisphaerica)
TAAATTTGTAATCGTCAGATGAATGCCCATCAAATGAATATCCACGTTAC
TGAATATTAAACTAAAGACAGGTCCAATTAGAAAAGTTACATAATAACTT
GATACAAGAATTGACACTTTCTCAACAGCTTCATCTTCTGGGTACACTCT
TAATACTTCGCCAAAGCTGACAGTAAACATAGCATCGGCAAATCCTTGTA
AAGACCGTCCCACAAACGGGAAAACCACGGAGAAAGGTATAGTGtacaaa
aaatttccaagtgaaacCACAAAAAACCCAAAGTAGAAACACCTCTTGAT
ATTTCGAGTTCGATCTGCATATTTAGTGATGGTTAGATTGCCAATCATTG
AAGAAATCCAATAAACTGCCGTTATCAATGCGAACCatgttttttcatct
ttcaccTTGATGACGTCACGTAAATAAGTCAACAAAGACGGCACCACGAT
TGAATATTCGGTACCATTCAAGCcaagaaagaaacaaaatacAATGAAAG
TTCTTTTTCTCGAAGCTTCCCATTTCTTAATATCAACATTCTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008552XLOC_008552Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015302-proteinTCONS_00015302-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015302-exon-sc0000208-1491911889:71644..72294TCONS_00015302-exon-sc0000208-1491911889:71644..72294Clytia hemisphaericaexon
TCONS_00015302-exon-sc0000208-1510915933:71644..72294TCONS_00015302-exon-sc0000208-1510915933:71644..72294Clytia hemisphaericaexon
TCONS_00015302-exon-sc0000208-1575043694:71644..72294TCONS_00015302-exon-sc0000208-1575043694:71644..72294Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000208supercontigsc0000208:71644..72294 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.28156	4.37581	1.45411	1.12903	1.57579	1.87369	4.02474	5.25161	0.949872	1.37601	0.0987495	0.738037	0.106765	0	0.136734	0.208126	0.205009	0.277138	0	0	0.506245	0.739099	9.06245	7.30862	0.684603	1.51806	6.43841	5.9556	5.48818	6.38563
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015302 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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