TCONS_00015316 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015316
Unique NameTCONS_00015316
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length738

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015316 ID=TCONS_00015316|Name=TCONS_00015316|organism=Clytia hemisphaerica|type=transcript|length=738bp
ATCTCGTACCTCGTTATGTCTAAGAGTAACGTAGCCTCCTTTCTTGCAGG
ACAGAGCATGGCTGATATCAAAACGATTACCACAGACACATTCACTCGGA
AGACGAGGGATACTCCAGTCATAACGAATTCGCAGTGCATCGTGAAACTG
TTCCTTGTTAAGATCATAGCCTTGATCTCTGATTGGAAGGTTGGTCAACC
AGTTCGATGCTCCGGTATAGCAATTGGCTTCGTGGATTCGTTCTTGATCA
TCAGTCATTTCCGCCCTGATACGATCGTGTTTGTCTTGATTTCTTCGGGT
TTTCTCAGTTTTGATCGCTGCtttagtttttgtttcattGTCATTTGGTG
GTTGGAGGTTCAAGATTTGGTTTTGTAGATGTTTGGTGAATTGTCTCGAG
TTTTCGTGTTCGATGGGTGCGATCTCGCATACGTTTTTGAGACCGAGGCC
TCCCAGTTTAGGTGGTAATGATAACAAGTCTCTTTCTAAGTCATTTACAA
TTTCACCCCCTGTAATGGCTGGAATGAGTTGGTGTCTGACGATTGTTTCG
ATGGGTGTTAAGTAGTTTTCCATTTCTggaattgttcttaaaaaatacgA
ATTGTCCGtcaaaattgtctaattttccgtatCCGCCGGaaaacccaatt
tccgtaatttcgtctaaattttcgccaaattccaccactccgtccgaaaa
gaAGGCCGATTCcactcctccgccaaccatgaaacccc
Run BLAST on NCBI

protein sequence of TCONS_00015316-protein

>TCONS_00015316-protein ID=TCONS_00015316-protein|Name=TCONS_00015316-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
MENYLTPIETIVRHQLIPAITGGEIVNDLERDLLSLPPKLGGLGLKNVCE
IAPIEHENSRQFTKHLQNQILNLQPPNDNETKTKAAIKTEKTRRNQDKHD
RIRAEMTDDQERIHEANCYTGASNWLTNLPIRDQGYDLNKEQFHDALRIR
YDWSIPRLPSECVCGNRFDISHALSCKKGGYVTLRHNEVRD
Run BLAST on NCBI

transcript from alignment at sc0000208:318767..319504

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015316 ID=TCONS_00015316|Name=TCONS_00015316|organism=Clytia hemisphaerica|type=transcript|length=738bp|location=Sequence derived from alignment at sc0000208:318767..319504 (Clytia hemisphaerica)
ggggtttcatggttggcggaggagtgGAATCGGCCTtcttttcggacgga
gtggtggaatttggcgaaaatttagacgaaattacggaaattgggttttC
CGGCGGatacggaaaattagacaattttgaCGGACAATTcgtatttttta
agaacaattccAGAAATGGAAAACTACTTAACACCCATCGAAACAATCGT
CAGACACCAACTCATTCCAGCCATTACAGGGGGTGAAATTGTAAATGACT
TAGAAAGAGACTTGTTATCATTACCACCTAAACTGGGAGGCCTCGGTCTC
AAAAACGTATGCGAGATCGCACCCATCGAACACGAAAACTCGAGACAATT
CACCAAACATCTACAAAACCAAATCTTGAACCTCCAACCACCAAATGACa
atgaaacaaaaactaaaGCAGCGATCAAAACTGAGAAAACCCGAAGAAAT
CAAGACAAACACGATCGTATCAGGGCGGAAATGACTGATGATCAAGAACG
AATCCACGAAGCCAATTGCTATACCGGAGCATCGAACTGGTTGACCAACC
TTCCAATCAGAGATCAAGGCTATGATCTTAACAAGGAACAGTTTCACGAT
GCACTGCGAATTCGTTATGACTGGAGTATCCCTCGTCTTCCGAGTGAATG
TGTCTGTGGTAATCGTTTTGATATCAGCCATGCTCTGTCCTGCAAGAAAG
GAGGCTACGTTACTCTTAGACATAACGAGGTACGAGAT

Coding sequence (CDS) from alignment at sc0000208:318767..319504

>TCONS_00015316 ID=TCONS_00015316|Name=TCONS_00015316|organism=Clytia hemisphaerica|type=CDS|length=573bp|location=Sequence derived from alignment at sc0000208:318767..319504 (Clytia hemisphaerica)
ATGGAAAACTACTTAACACCCATCGAAACAATCGTCAGACACCAACTCAT
TCCAGCCATTACAGGGGGTGAAATTGTAAATGACTTAGAAAGAGACTTGT
TATCATTACCACCTAAACTGGGAGGCCTCGGTCTCAAAAACGTATGCGAG
ATCGCACCCATCGAACACGAAAACTCGAGACAATTCACCAAACATCTACA
AAACCAAATCTTGAACCTCCAACCACCAAATGACaatgaaacaaaaacta
aaGCAGCGATCAAAACTGAGAAAACCCGAAGAAATCAAGACAAACACGAT
CGTATCAGGGCGGAAATGACTGATGATCAAGAACGAATCCACGAAGCCAA
TTGCTATACCGGAGCATCGAACTGGTTGACCAACCTTCCAATCAGAGATC
AAGGCTATGATCTTAACAAGGAACAGTTTCACGATGCACTGCGAATTCGT
TATGACTGGAGTATCCCTCGTCTTCCGAGTGAATGTGTCTGTGGTAATCG
TTTTGATATCAGCCATGCTCTGTCCTGCAAGAAAGGAGGCTACGTTACTC
TTAGACATAACGAGGTACGAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008566XLOC_008566Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015316-exon-sc0000208-1491911889:318767..319504TCONS_00015316-exon-sc0000208-1491911889:318767..319504Clytia hemisphaericaexon
TCONS_00015316-exon-sc0000208-1510915933:318767..319504TCONS_00015316-exon-sc0000208-1510915933:318767..319504Clytia hemisphaericaexon
TCONS_00015316-exon-sc0000208-1575043694:318767..319504TCONS_00015316-exon-sc0000208-1575043694:318767..319504Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015316-proteinTCONS_00015316-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000208supercontigsc0000208:318767..319504 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.558756	0.890694	0.766746	1.29122	0.97853	0.745155	1.20068	1.23619	1.03191	0.420017	1.08714	0.453864	1.72413	1.84666	0.80095	0.39626	2.185	1.22216	0.171954	0.882035	0.997519	0.874736	0.971831	1.01968	2.18436	3.39788	3.48219	0.896663	6.40196	2.02864
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015316 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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