TCONS_00015322 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015322
Unique NameTCONS_00015322
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length199

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015322 ID=TCONS_00015322|Name=TCONS_00015322|organism=Clytia hemisphaerica|type=transcript|length=199bp
GCTATCATACCTTCATTTGTTCGATACCCAAAACACACTTCGGCAGTTCA
TTATGTGTTTTTGTTGTTTCATTTTTGCGATGGAATTCTCGGATATATAT
TTCTGGTGCTTGAAAAAAGCTCATTTCATTTGTGGCTTTTATGTTTCGaa
tttattgcATGTATCATGATTTCGATCTTTGTGAACTTATCCTCAATTG
Run BLAST on NCBI

transcript from alignment at sc0000210:211322..212326+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015322 ID=TCONS_00015322|Name=TCONS_00015322|organism=Clytia hemisphaerica|type=transcript|length=1005bp|location=Sequence derived from alignment at sc0000210:211322..212326+ (Clytia hemisphaerica)
GCTATCATACCTTCATTTGTTCGATACCCAAAACACACTTCGGCAGTTCA
TTATGTGTTTTTGTTGTTTCATTTTTGCGATGGAATTCTCGGATATATAT
TTCTGGTGCTTGAAAAAAGCTCATTTCATTTGTGGCTTTTATGTTTCGGT
AAGTACATAAACACTAACAAAGTCTTCGATCATAATATTTCTGCATTATC
GAAGTGgtattcaaaaagtaaaaaagtctttGTTATTTTGGAGCATTGaa
tctttttttcactttcatttttcaaaatattttgagttatactgcccccc
cccagcggccaatttttttgctttcccACCCCTATTTGATCTCCCCCTTG
CTTATCCCTAAAGTCAGCGATTTCCCATCTCAAgcaaaagcaaaagattt
tctAGGCTTGCCAATTATTATTTAGTTATTTAAAGATATacaaatgacaa
aaaaacaggctTTTTAAGATGAAGAAGCAAGCTTACTATTAAGATGAACA
ATTTCTAATAATGAAAAGTCAAGNcagtttttttaagatgaagAAGCAAG
CTTACTATTAAGATGAACAATTTCTAATAATGAAAGTCAAGTAAATATGT
TTTGCAATGAAGTCATCCTATCGCAAAATGAGTATATTTAAACAAAAAGC
TTTTAACAACGTAAAAAAGACAGAAGTTTTCTTTTTCCATGAAATTACAC
TTTTGAAATGTCTTTATAAAACATTTCCCCTgctaaaagttttcattttc
ccccctaTCTGAATCTTTTCCATGATTTCCTCCTACTTCCCAGAAAAGGC
AAGCATGAGTCAACCCCCTCCCTTTAAcacttttgttttaaaggtATCTT
CTCTCCTTAAAAGCTATGTTTAGAAAAATACGAACTGCAAATGTTTTGGA
ACaacattaataattaatttgCTGTATAATTAataaatatctttcttttt
ttagaatttattgcATGTATCATGATTTCGATCTTTGTGAACTTATCCTC
AATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008572XLOC_008572Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015322-exon-sc0000210-1491911889:211322..211469TCONS_00015322-exon-sc0000210-1491911889:211322..211469Clytia hemisphaericaexon
TCONS_00015322-exon-sc0000210-1510915933:211322..211469TCONS_00015322-exon-sc0000210-1510915933:211322..211469Clytia hemisphaericaexon
TCONS_00015322-exon-sc0000210-1575043694:211322..211469TCONS_00015322-exon-sc0000210-1575043694:211322..211469Clytia hemisphaericaexon
TCONS_00015322-exon-sc0000210-1491911889:212276..212326TCONS_00015322-exon-sc0000210-1491911889:212276..212326Clytia hemisphaericaexon
TCONS_00015322-exon-sc0000210-1510915933:212276..212326TCONS_00015322-exon-sc0000210-1510915933:212276..212326Clytia hemisphaericaexon
TCONS_00015322-exon-sc0000210-1575043694:212276..212326TCONS_00015322-exon-sc0000210-1575043694:212276..212326Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000210supercontigsc0000210:211322..212326 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.6895	0	0	0	0	0	1.7612	0	0	0	0	0	0	0	0.959356	3.08861	0	0	3.59196	0	0	0	0	0	0	1.6189	0	0	0	1.91055
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015322 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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