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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015329 ID=TCONS_00015329|Name=TCONS_00015329|organism=Clytia hemisphaerica|type=transcript|length=2988bp
tgcctgtttttctgtttttttagaattaatatccaaagtcagaaaatcct
CTTGCAATCAAAGGTAAAATATTAGGGGTAatgtatgaaaatattttctt
tttagtttaGGTTACAAAATATAACAATGGATCATTTTCTAAATGAAGCA
AAACGTCTGGTACAGCGGTTACAACACCATGACAATGCAgttgatatttt
gattggtgaaacaacaaatcttcaaaataaattgaTTGCTATGAGACAAT
ATAAAGATGAAGTTGTTAAAATGAATCAATCTGCAAACCATCGACCGAAA
AGTACACTGATTCTTGGCAGTCAGCTTGAGAATCAAAGAATACAGAGCCT
AGAACAGGAAAACCGAGAATTGAGCATTTCACTTGCAGAACATCAATCTG
CACTTGAGTTGATTATGAATAAGTACAGAGAGCAAGTGGTGGTAATGATT
AAAGCAAATGGAACAAACTTGGCTCTGTCGCCAAGCTTTAGTCAACCAAG
TGAAAAAGAACGCCAATTGAATGAACAGATTGCTGAAATGGCATATGTGA
TGAGACAATCCGCTTCCATTGATGAAAATCATGCTGCTAAAGAAATTGAA
ACCATACGTAGCCTTCAAGTAGAGAACGACAACTTACGACAACTCCTACA
AATTAGTGGTCAAAGTTTGAAACAGAGCAATAATGAAACTCCACCTAATG
ATTCAGCTATTTCTTCACAAAGTTCCTTAGCAACTCAACCACCAGTCCCA
AAAATATCTCAAATGCAACATCAGTCAATTGAAGAGGTTGATACAAAAGA
CAGTGGAATTTACGACGAAGAATATTCTCCAAATTTTGACTTATTTaaaa
agggaaagaaaaggAAACCTTTGAATACATCAAGACATGTTGATAAATTG
GAAAACCTTTTTAAGATGCCTTCAACTTTACATAAATCGCCAGCCCCGAC
TGAAATTGATATTCTTGAAAacagttttgataaaaattctaCCAATGTGA
AACTTGAGAAGGAAACTGAAAACCAATTAGAGGATTTGGATCAAACAGAT
CATCAAGAGGAAAAACAACATCAAATGTACACAGTAGAAGCACTCATTGA
GAATAACATATCTGATAAAGATGATGAAGACTTACAATTAACAAACGGAC
atttggaagaaaatttattgattgatgATTTGGACGCTTTACTTGAGCAG
GAGTTTGATGATGCGGATTTCGATTCAGAACCTTCAGAATCTCATGAATC
AAACTTGAACAATGATTTTAAAGATGTcattttaaataattccttCCAAA
AGAAAACAGATAGCTCTTCAAAATACAAAACACAGTTAGATGAAAGTGAT
GCattgaaatttttggatgaTGCGTTGGATTCTTCTGAAGAATCTGATAA
TGACGACAATAACAAAGAATTGTGTGCTGACACTATAAGTCTGAAGgaaa
ataacaattcaaaagtACATCATGAAGAAAACTCTATATCTGATACTCAT
TCAACCTTGTTGAAGGAGGAAGCAGCAGAAGCTCCAGATGAGATGGATGT
TCTTGATTTTCTGGATAACTTCGATAAAGAAATTGAGGATGATGATTGTA
GTGAGACACAATCTGAAGCAGAATCTGAGGTTACGATAATTGACACGAAT
CAGGAGGATGACACAATGGCATTGTTTGATTCTGTTCTGGAGGATGACGA
TTCTCCACTCAGCGAGGATGAAGGGAATGACTGAAGTGTATCTGAAAAAT
TAAACCATTGAGAAGTATAATTGTTGTGTATGCGTTGCTTCACAGTATGT
GCCAGCAAGAGATAAAAGTACGTAGTAATAAGAACATGAGGTTCATACAT
TCTATTAAAGATTTCATTAAACAGATGGTTTTATTATTGAATGGAAAACT
GATTGGAAAtgtaaagacttttttaaggggcactattttatttttctctt
ctaaaTTCCATATGTTTTCTGGAACTTTTTTTaagagaaaatataatttt
gaaaatatgtgaCCCTTCCAGTCTGCTATTCTACCTTTGTTGTTTGAAAG
TGTTGAAATTGAAATCTGTTAAAACTAAATATTGCTACTAAGAATCTATA
TTATCTTgatgcatttaaaaaattataGTTTTCTAATGAAAATGTTCCAG
CTAGACAGAGGCTTGATAAAggaacaaaataaattttgtgtTATTTCTTT
CTAATTCTGAACTCTCCGCCCAGATTCACAGAAGGTTGTTGACAACACTG
AAAGTAATGTGAGAAgagatattattattattaattataaTAATTTTAAT
TGATTATGTAAATAAAGTGTTCcttattatttcttttctacATTTTTCTT
AGGTTTCAATTGCATAAAATTTATGACATATTTAGgattttttcttatat
tttatttCGCCTTAGTTTAGTTTTTGAATGAATTATTATGATAATGTTTT
CCTAATCCGATTGATGAACATTTCTAAAGTAATATCCTCGTAATGCTTTC
CAGCATCCATGTAGAACTTGTGTTTACAAAAAGTGGAAAGAAAAGTTGCT
GCTGTGATATAATTTTAATATGCTTTTGTTTCACTAGTTGTTGTTTTAAG
TGCTGGTTTTAGTCAATTTCTCACACGAAGAATGTCTCCAGAAGCAACAA
AAGTTGTTTCTGAATCTATAAAGTCCATAAGGTTTACCATCAAATTTCAA
TCCAGTAAGATatatgattttgtttttataatatgattgttttttccaaa
atatttataATTATAACATATAAAAAGGTCAGAGAAAAACGAAGAGAGTT
TATTTTCTTACATTATAATTGTCTTTTAGAATTTATCTGGTaaagtatta
ttattattactgtTAATGTTATTTTTCATTATGGTAGACCAGATATTTTG
TGTAGAAGGACTGTTAGGAATTTTAAATGCAATTTTTATTGATCATCGAT
TTTGTTTTGAGGCTGTGACAAGATTTTCGTAGTAATAA Run BLAST on NCBI transcript from alignment at sc0000210:387310..390297+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015329 ID=TCONS_00015329|Name=TCONS_00015329|organism=Clytia hemisphaerica|type=transcript|length=2988bp|location=Sequence derived from alignment at sc0000210:387310..390297+ (Clytia hemisphaerica)
tgcctgtttttctgtttttttagaattaatatccaaagtcagaaaatcct
CTTGCAATCAAAGGTAAAATATTAGGGGTAatgtatgaaaatattttctt
tttagtttaGGTTACAAAATATAACAATGGATCATTTTCTAAATGAAGCA
AAACGTCTGGTACAGCGGTTACAACACCATGACAATGCAgttgatatttt
gattggtgaaacaacaaatcttcaaaataaattgaTTGCTATGAGACAAT
ATAAAGATGAAGTTGTTAAAATGAATCAATCTGCAAACCATCGACCGAAA
AGTACACTGATTCTTGGCAGTCAGCTTGAGAATCAAAGAATACAGAGCCT
AGAACAGGAAAACCGAGAATTGAGCATTTCACTTGCAGAACATCAATCTG
CACTTGAGTTGATTATGAATAAGTACAGAGAGCAAGTGGTGGTAATGATT
AAAGCAAATGGAACAAACTTGGCTCTGTCGCCAAGCTTTAGTCAACCAAG
TGAAAAAGAACGCCAATTGAATGAACAGATTGCTGAAATGGCATATGTGA
TGAGACAATCCGCTTCCATTGATGAAAATCATGCTGCTAAAGAAATTGAA
ACCATACGTAGCCTTCAAGTAGAGAACGACAACTTACGACAACTCCTACA
AATTAGTGGTCAAAGTTTGAAACAGAGCAATAATGAAACTCCACCTAATG
ATTCAGCTATTTCTTCACAAAGTTCCTTAGCAACTCAACCACCAGTCCCA
AAAATATCTCAAATGCAACATCAGTCAATTGAAGAGGTTGATACAAAAGA
CAGTGGAATTTACGACGAAGAATATTCTCCAAATTTTGACTTATTTaaaa
agggaaagaaaaggAAACCTTTGAATACATCAAGACATGTTGATAAATTG
GAAAACCTTTTTAAGATGCCTTCAACTTTACATAAATCGCCAGCCCCGAC
TGAAATTGATATTCTTGAAAacagttttgataaaaattctaCCAATGTGA
AACTTGAGAAGGAAACTGAAAACCAATTAGAGGATTTGGATCAAACAGAT
CATCAAGAGGAAAAACAACATCAAATGTACACAGTAGAAGCACTCATTGA
GAATAACATATCTGATAAAGATGATGAAGACTTACAATTAACAAACGGAC
atttggaagaaaatttattgattgatgATTTGGACGCTTTACTTGAGCAG
GAGTTTGATGATGCGGATTTCGATTCAGAACCTTCAGAATCTCATGAATC
AAACTTGAACAATGATTTTAAAGATGTcattttaaataattccttCCAAA
AGAAAACAGATAGCTCTTCAAAATACAAAACACAGTTAGATGAAAGTGAT
GCattgaaatttttggatgaTGCGTTGGATTCTTCTGAAGAATCTGATAA
TGACGACAATAACAAAGAATTGTGTGCTGACACTATAAGTCTGAAGgaaa
ataacaattcaaaagtACATCATGAAGAAAACTCTATATCTGATACTCAT
TCAACCTTGTTGAAGGAGGAAGCAGCAGAAGCTCCAGATGAGATGGATGT
TCTTGATTTTCTGGATAACTTCGATAAAGAAATTGAGGATGATGATTGTA
GTGAGACACAATCTGAAGCAGAATCTGAGGTTACGATAATTGACACGAAT
CAGGAGGATGACACAATGGCATTGTTTGATTCTGTTCTGGAGGATGACGA
TTCTCCACTCAGCGAGGATGAAGGGAATGACTGAAGTGTATCTGAAAAAT
TAAACCATTGAGAAGTATAATTGTTGTGTATGCGTTGCTTCACAGTATGT
GCCAGCAAGAGATAAAAGTACGTAGTAATAAGAACATGAGGTTCATACAT
TCTATTAAAGATTTCATTAAACAGATGGTTTTATTATTGAATGGAAAACT
GATTGGAAAtgtaaagacttttttaaggggcactattttatttttctctt
ctaaaTTCCATATGTTTTCTGGAACTTTTTTTaagagaaaatataatttt
gaaaatatgtgaCCCTTCCAGTCTGCTATTCTACCTTTGTTGTTTGAAAG
TGTTGAAATTGAAATCTGTTAAAACTAAATATTGCTACTAAGAATCTATA
TTATCTTgatgcatttaaaaaattataGTTTTCTAATGAAAATGTTCCAG
CTAGACAGAGGCTTGATAAAggaacaaaataaattttgtgtTATTTCTTT
CTAATTCTGAACTCTCCGCCCAGATTCACAGAAGGTTGTTGACAACACTG
AAAGTAATGTGAGAAgagatattattattattaattataaTAATTTTAAT
TGATTATGTAAATAAAGTGTTCcttattatttcttttctacATTTTTCTT
AGGTTTCAATTGCATAAAATTTATGACATATTTAGgattttttcttatat
tttatttCGCCTTAGTTTAGTTTTTGAATGAATTATTATGATAATGTTTT
CCTAATCCGATTGATGAACATTTCTAAAGTAATATCCTCGTAATGCTTTC
CAGCATCCATGTAGAACTTGTGTTTACAAAAAGTGGAAAGAAAAGTTGCT
GCTGTGATATAATTTTAATATGCTTTTGTTTCACTAGTTGTTGTTTTAAG
TGCTGGTTTTAGTCAATTTCTCACACGAAGAATGTCTCCAGAAGCAACAA
AAGTTGTTTCTGAATCTATAAAGTCCATAAGGTTTACCATCAAATTTCAA
TCCAGTAAGATatatgattttgtttttataatatgattgttttttccaaa
atatttataATTATAACATATAAAAAGGTCAGAGAAAAACGAAGAGAGTT
TATTTTCTTACATTATAATTGTCTTTTAGAATTTATCTGGTaaagtatta
ttattattactgtTAATGTTATTTTTCATTATGGTAGACCAGATATTTTG
TGTAGAAGGACTGTTAGGAATTTTAAATGCAATTTTTATTGATCATCGAT
TTTGTTTTGAGGCTGTGACAAGATTTTCGTAGTAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015329-exon-sc0000210-1491911889:387310..390297 | TCONS_00015329-exon-sc0000210-1491911889:387310..390297 | Clytia hemisphaerica | exon |
| TCONS_00015329-exon-sc0000210-1510915933:387310..390297 | TCONS_00015329-exon-sc0000210-1510915933:387310..390297 | Clytia hemisphaerica | exon |
| TCONS_00015329-exon-sc0000210-1575043694:387310..390297 | TCONS_00015329-exon-sc0000210-1575043694:387310..390297 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000210 | supercontig | sc0000210:387310..390297 + |
Blast
BLAST of TCONS_00015329 vs. Swiss-Prot (Human)
Match: FGOP2 (FGFR1 oncogene partner 2 OS=Homo sapiens GN=FGFR1OP2 PE=1 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 1.397e-36 Identity = 93/248 (37.50%), Postives = 141/248 (56.85%), Query Frame = 1
Query: 118 NITMDHFLNEAKRLVQRLQHHDNAVDILIGETTNLQNKLIAMRQYKDEVVKMNQSANHRPKSTLILGSQLENQRIQSLEQENRELSISLAEHQSALELIMNKYREQVVVMIKAN-----GTNLALSPSFS-------------------------QPSEKERQLN----------EQIAEMAYVMRQSASIDENHAAKEIETIRSLQVENDNLRQLLQISGQS---LKQSNNETPPNDSAISSQSSLA 732
+ T++ L +AK LV+RL+ HD+A + LI +TT L ++ AM+QY++E+ ++N+ A HRP+STL++G Q EN++I+ L+QEN+EL SL EHQSALELIM+KYREQ+ ++ A+ G + L S Q + R L +QI EMA VMR++ IDE KE E I L+ EN LR++LQI+ +S L++ + + SA+ + S L+
Sbjct: 2 SCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMKQYQEEIQELNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLLMASKKDDPGIIMKLKEQHSKIDMVHRNKSEGFFLDASRHILEAPQHGLERRHLEANQNELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQLEQENKGLREILQITRESFLNLRKDDASESTSLSALVTNSDLS 249
The following BLAST results are available for this feature:
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