TCONS_00015385 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015385
Unique NameTCONS_00015385
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length757

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015385 ID=TCONS_00015385|Name=TCONS_00015385|organism=Clytia hemisphaerica|type=transcript|length=757bp
aataaataaaataatagaTAAAAACGACGATAATCTAAATTTAGAATAGt
caccaaaattttaaataacaGATAAATAGGTTAAATAACACTTCAGTTAA
AGTTAGTAACAAGATAATGGTTATATATTTATATTTCCTgttcttcaaaa
ctttttatggAGTTAAAAACTCTTGGACTCCAGTAGAAATATTATAACCC
ACAAGACAAGCAGCTGTTAGTGCAATTGAAACGAGAGCAGCAAAAAACGC
AATTGCTCCCACTGATACAAGCGCGATCGAAGTAAAAGTTCCAAAAACAA
TAAAGCTGCCACATATTGTCATTACCAAGGTCGAAATAATGAAAACAAGA
CAAAGAATCAGGGGCATAGAAATTATGACAccaaatatcaacaaaaataa
tgaccccACCGGATATTTCTCAATCATATTCAATATTGGAGTTGTATAAG
GTTCGAAATTTGTTTGGTTCCATTTCTCAATGATTTCTTGGATCTTCTTG
CTTTGTGGAAAAATCGGTAAGCGATGTGTCGCTGCCCGTTTCTTTTTCTG
TTTGCAGTTGATTGCATCCCCTTCTTCTTCTTGCATATTTCCTTGCTGAT
AAAAGCAGAGCTTAAAAGAGGTTAAATTATAGAAATGAGTACTTCATAAT
CAAAACATCTCAAAGAAAGTTGGCTATTGTATAAGCAAGTATAAATTCCA
GAGTCAGCTCCACTTCAACACCGACTCGAGCGTGGGACTGCGACTGATGA
AGGCAGG
Run BLAST on NCBI

protein sequence of TCONS_00015385-protein

>TCONS_00015385-protein ID=TCONS_00015385-protein|Name=TCONS_00015385-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
MQEEEGDAINCKQKKKRAATHRLPIFPQSKKIQEIIEKWNQTNFEPYTTP
ILNMIEKYPVGSLFLLIFGVIISMPLILCLVFIISTLVMTICGSFIVFGT
FTSIALVSVGAIAFFAALVSIALTAACLVGYNISTGVQEFLTP
Run BLAST on NCBI

transcript from alignment at sc0000210:414360..415116

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015385 ID=TCONS_00015385|Name=TCONS_00015385|organism=Clytia hemisphaerica|type=transcript|length=757bp|location=Sequence derived from alignment at sc0000210:414360..415116 (Clytia hemisphaerica)
CCTGCCTTCATCAGTCGCAGTCCCACGCTCGAGTCGGTGTTGAAGTGGAG
CTGACTCTGGAATTTATACTTGCTTATACAATAGCCAACTTTCTTTGAGA
TGTTTTGATTATGAAGTACTCATTTCTATAATTTAACCTCTTTTAAGCTC
TGCTTTTATCAGCAAGGAAATATGCAAGAAGAAGAAGGGGATGCAATCAA
CTGCAAACAGAAAAAGAAACGGGCAGCGACACATCGCTTACCGATTTTTC
CACAAAGCAAGAAGATCCAAGAAATCATTGAGAAATGGAACCAAACAAAT
TTCGAACCTTATACAACTCCAATATTGAATATGATTGAGAAATATCCGGT
ggggtcattatttttgttgatatttggTGTCATAATTTCTATGCCCCTGA
TTCTTTGTCTTGTTTTCATTATTTCGACCTTGGTAATGACAATATGTGGC
AGCTTTATTGTTTTTGGAACTTTTACTTCGATCGCGCTTGTATCAGTGGG
AGCAATTGCGTTTTTTGCTGCTCTCGTTTCAATTGCACTAACAGCTGCTT
GTCTTGTGGGTTATAATATTTCTACTGGAGTCCAAGAGTTTTTAACTcca
taaaaagttttgaagaacAGGAAATATAAATATATAACCATTATCTTGTT
ACTAACTTTAACTGAAGTGTTATTTAACCTATTTATCtgttatttaaaat
tttggtgaCTATTCTAAATTTAGATTATCGTCGTTTTTAtctattatttt
atttatt

Coding sequence (CDS) from alignment at sc0000210:414360..415116

>TCONS_00015385 ID=TCONS_00015385|Name=TCONS_00015385|organism=Clytia hemisphaerica|type=CDS|length=432bp|location=Sequence derived from alignment at sc0000210:414360..415116 (Clytia hemisphaerica)
ATGCAAGAAGAAGAAGGGGATGCAATCAACTGCAAACAGAAAAAGAAACG
GGCAGCGACACATCGCTTACCGATTTTTCCACAAAGCAAGAAGATCCAAG
AAATCATTGAGAAATGGAACCAAACAAATTTCGAACCTTATACAACTCCA
ATATTGAATATGATTGAGAAATATCCGGTggggtcattatttttgttgat
atttggTGTCATAATTTCTATGCCCCTGATTCTTTGTCTTGTTTTCATTA
TTTCGACCTTGGTAATGACAATATGTGGCAGCTTTATTGTTTTTGGAACT
TTTACTTCGATCGCGCTTGTATCAGTGGGAGCAATTGCGTTTTTTGCTGC
TCTCGTTTCAATTGCACTAACAGCTGCTTGTCTTGTGGGTTATAATATTT
CTACTGGAGTCCAAGAGTTTTTAACTccataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008608XLOC_008608Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015385-proteinTCONS_00015385-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015385-exon-sc0000210-1491911889:414360..415116TCONS_00015385-exon-sc0000210-1491911889:414360..415116Clytia hemisphaericaexon
TCONS_00015385-exon-sc0000210-1510915933:414360..415116TCONS_00015385-exon-sc0000210-1510915933:414360..415116Clytia hemisphaericaexon
TCONS_00015385-exon-sc0000210-1575043694:414360..415116TCONS_00015385-exon-sc0000210-1575043694:414360..415116Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000210supercontigsc0000210:414360..415116 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
56.5184	60.3543	14.8804	15.7056	68.3606	44.0159	17.6456	15.6625	22.1495	14.9342	28.204	30.1386	20.3659	19.1827	20.8439	16.7272	29.792	30.7849	34.0661	27.582	33.1752	32.0581	49.4372	46.4978	32.5997	40.0746	22.5481	17.9058	17.8205	24.0131
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015385 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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