TCONS_00015386 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015386
Unique NameTCONS_00015386
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length482

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015386 ID=TCONS_00015386|Name=TCONS_00015386|organism=Clytia hemisphaerica|type=transcript|length=482bp
CAGGAACGAACGAAAAGCAACCTCCTGATCCACCAACACCACCAACGCCA
CCCGACCCTCCAAATAATCAGCCTCAGGCTGTAATATGCCCAAGTATCCA
ATCATTCCGCTGGAATGACGTTGATGGGTCCGAGGCCATTCGGGACATGG
ATATGTGCTACCAAAGAATAGTAACATGGAAGAAGAACCTTTTTCTGCTG
CCTAAAGGAAATGCAGGAAAAGAGTATATTCGAGAAATCACAAAGCTGTT
GACTGCGTTTGTCGAAAAAACTCCACTCCAAAGCTGTGCATTCACCGCCA
TTCAAATCATGCCAGCACTTCTTCTACAAAAGCcatcaaaaacttcaaag
agTAAAGATCACCTCCAAGCGCTTGAAAGAAGAATGAAAATCTGGAAGAA
AGGAGACTTTCACCAACTTCTCCGAGAAGCGGAAACTATACAGCGGCGCC
TTCCTTCAACATATAAGAAGAGAGACCTTGCC
Run BLAST on NCBI

protein sequence of TCONS_00015386-protein

>TCONS_00015386-protein ID=TCONS_00015386-protein|Name=TCONS_00015386-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
GTNEKQPPDPPTPPTPPDPPNNQPQAVICPSIQSFRWNDVDGSEAIRDMD
MCYQRIVTWKKNLFLLPKGNAGKEYIREITKLLTAFVEKTPLQSCAFTAI
QIMPALLLQKPSKTSKSKDHLQALERRMKIWKKGDFHQLLREAETIQRRL
PSTYKKRDLA
Run BLAST on NCBI

transcript from alignment at sc0000210:435281..435762

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015386 ID=TCONS_00015386|Name=TCONS_00015386|organism=Clytia hemisphaerica|type=transcript|length=482bp|location=Sequence derived from alignment at sc0000210:435281..435762 (Clytia hemisphaerica)
GGCAAGGTCTCTCTTCTTATATGTTGAAGGAAGGCGCCGCTGTATAGTTT
CCGCTTCTCGGAGAAGTTGGTGAAAGTCTCCTTTCTTCCAGATTTTCATT
CTTCTTTCAAGCGCTTGGAGGTGATCTTTActctttgaagtttttgatgG
CTTTTGTAGAAGAAGTGCTGGCATGATTTGAATGGCGGTGAATGCACAGC
TTTGGAGTGGAGTTTTTTCGACAAACGCAGTCAACAGCTTTGTGATTTCT
CGAATATACTCTTTTCCTGCATTTCCTTTAGGCAGCAGAAAAAGGTTCTT
CTTCCATGTTACTATTCTTTGGTAGCACATATCCATGTCCCGAATGGCCT
CGGACCCATCAACGTCATTCCAGCGGAATGATTGGATACTTGGGCATATT
ACAGCCTGAGGCTGATTATTTGGAGGGTCGGGTGGCGTTGGTGGTGTTGG
TGGATCAGGAGGTTGCTTTTCGTTCGTTCCTG

Coding sequence (CDS) from alignment at sc0000210:435281..435762

>TCONS_00015386 ID=TCONS_00015386|Name=TCONS_00015386|organism=Clytia hemisphaerica|type=CDS|length=480bp|location=Sequence derived from alignment at sc0000210:435281..435762 (Clytia hemisphaerica)
GGCAAGGTCTCTCTTCTTATATGTTGAAGGAAGGCGCCGCTGTATAGTTT
CCGCTTCTCGGAGAAGTTGGTGAAAGTCTCCTTTCTTCCAGATTTTCATT
CTTCTTTCAAGCGCTTGGAGGTGATCTTTActctttgaagtttttgatgG
CTTTTGTAGAAGAAGTGCTGGCATGATTTGAATGGCGGTGAATGCACAGC
TTTGGAGTGGAGTTTTTTCGACAAACGCAGTCAACAGCTTTGTGATTTCT
CGAATATACTCTTTTCCTGCATTTCCTTTAGGCAGCAGAAAAAGGTTCTT
CTTCCATGTTACTATTCTTTGGTAGCACATATCCATGTCCCGAATGGCCT
CGGACCCATCAACGTCATTCCAGCGGAATGATTGGATACTTGGGCATATT
ACAGCCTGAGGCTGATTATTTGGAGGGTCGGGTGGCGTTGGTGGTGTTGG
TGGATCAGGAGGTTGCTTTTCGTTCGTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008609XLOC_008609Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015386-exon-sc0000210-1491911889:435281..435762TCONS_00015386-exon-sc0000210-1491911889:435281..435762Clytia hemisphaericaexon
TCONS_00015386-exon-sc0000210-1510915933:435281..435762TCONS_00015386-exon-sc0000210-1510915933:435281..435762Clytia hemisphaericaexon
TCONS_00015386-exon-sc0000210-1575043694:435281..435762TCONS_00015386-exon-sc0000210-1575043694:435281..435762Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015386-proteinTCONS_00015386-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000210supercontigsc0000210:435281..435762 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.51982	0.301696	0.294284	0.575821	2.53536	1.52335	2.56059	2.25841	2.79784	2.17367	3.15989	1.77071	1.16922	2.69272	2.0662	1.18786	2.32213	1.3999	0.414435	0.662878	1.00518	0.449845	0.74502	1.08373	1.58171	2.30519	0.712777	1.35909	1.2004	1.17566
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015386 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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