TCONS_00015417 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015417
Unique NameTCONS_00015417
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length696

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015417 ID=TCONS_00015417|Name=TCONS_00015417|organism=Clytia hemisphaerica|type=transcript|length=696bp
caaaaagcaaagttccgAAGAGgtgaaagaaacaaaaacctGCATTCAAT
AAacagaaaatttcgaattgaACGACGATCAGGAGGCAGATCTTGGAAAG
CATGGATCCACGAACAAAGCGACGATTGAATTCTCAAAAGAGACGCGATC
GAAGGCGTACGACTAACGTTTTTGCTAAACTTTCGCAAGAGAAGATTCAA
ACTTACAAAGAGATTTTCACTATGCTGGATGGAGATGCAGATTCCATCAT
TTCAAAGAAAGATCTTTCAACCATGTTTACTTCCTTGGGAATGACTGACA
TGACTGAACAGAAGATAAACGAAATGATCGCCGAGTCGAGTGGAACATTA
AATTTCACGGCTTTTCTTGCTATGTTTGCTCAAATGACTTGTGATATGGA
CTCAGATGAGACCATCAGAAACGCGTTCTTAGTGTTAGACAACGGTAACG
GAGTATGTGACGCTATAGAGTTCCAACATTTGTTAGTGACGTACGGCAAT
GACCGGTTGTCGCACGACGAAACGCAGAACATCATGCGGAACATTCCCGT
CGACGTTAACGGCATGATGGACGTCAAACAAGCCTCCAAGTTGTTCACGT
TCAATGAAGCTgaataattattattttccAGTTCTTGTTTTTAGTCTACT
TTCTtttggattttttaaataaatttatttaatttgaaattttgtg
Run BLAST on NCBI

transcript from alignment at sc0000211:68140..69546+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015417 ID=TCONS_00015417|Name=TCONS_00015417|organism=Clytia hemisphaerica|type=transcript|length=1407bp|location=Sequence derived from alignment at sc0000211:68140..69546+ (Clytia hemisphaerica)
caaaaagcaaagttccgAAGAGgtgaaagaaacaaaaacctGCATTCAAT
AAacagaaaatttcgaattgaACGACGATCAGGAGGCAGATCTTGGAAAG
CATGGATCCACGAACAAAGCGACGATTGAATTCTCAAAAGAGACGCGATC
GAAGGCGTACGACTAACGTTTTTGCTAAACTTTCGCAAGAGAAGATTCAA
ACTTACAAAGAGATTTTCACTATGCTGGATGGAGATGCAGATTCCATCAT
TTCAAAGAAAGATCTTTCAACCATGTTTACTTCCTTGGGAATGACTGACA
TGACTGAACAGAAGATAAACGAAATGATCGCCGAGTCGAGTGGAACATTA
AATTTCACGGCTTTTCTTGCTATGTTTGCTCAAATGACTTGTGATATGGA
CTCAGATGAGGTGAGCTTGttttcaaaatcagatttttttgaCTCGGTCC
TACATACAACTATGGCCATAATATTTAACAAAAGGAATTTtcctgcaaaa
tttttaaaaccgNGAACATTAAATTTTACGGCTTTTCTTGCTATGTTTGC
TCAAATGACTTGTGATATGGACTCAGATGAGGTGAGCTTGttttcaaaat
cagattttttttgcACGGTGCTAATAACCTGTTTTACCCTGTCTTGACCC
TCAATAGTCAGGACCGATAaataatacacgggtttcgaattaaaccACGC
ACgcgaaaaaattgtttttctttttaaattctaaGATCATACAATTGTCT
TATCATTTTATTCTCCCAAACAGTATGCCAAAATGAgttaaaattgcttt
ttttgCACGGCcgatttttctgttttgtttacttgatctttttttcgtgc
aaattacaTGAAATCAAACCAAAAGCTAATTATAGGAGGTAAAGAGGCCA
ATGCCGTACAATTGGACGGATTGGTTAGGAATGGCTTGTATGCCCCTTCA
ACGCGTCTGTCAGAGTAATCAATAGCGTGAATGGGGGGATATAAGCCATG
AGTTTGAGGGTGAGTCCTATCAAACTAATTGAAAATTGTTATTAGAAGGT
TATGTATAattacattattttttcattcttttcggATCCTTACCAATGAC
taaattctttatttctttcAGACCATCAGAAACGCGTTCTTAGTGTTAGA
CAACGGTAACGGAGTATGTGACGCTATAGAGTTCCAACATTTGTTAGTGA
CGTACGGCAATGACCGGTTGTCGCACGACGAAACGCAGAACATCATGCGG
AACATTCCCGTCGACGTTAACGGCATGATGGACGTCAAACAAGCCTCCAA
GTTGTTCACGTTCAATGAAGCTgaataattattattttccAGTTCTTGTT
TTTAGTCTACTTTCTtttggattttttaaataaatttatttaatttgaaa
ttttgtg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008613XLOC_008613Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015417-exon-sc0000211-1491911889:68140..68549TCONS_00015417-exon-sc0000211-1491911889:68140..68549Clytia hemisphaericaexon
TCONS_00015417-exon-sc0000211-1510915933:68140..68549TCONS_00015417-exon-sc0000211-1510915933:68140..68549Clytia hemisphaericaexon
TCONS_00015417-exon-sc0000211-1575043694:68140..68549TCONS_00015417-exon-sc0000211-1575043694:68140..68549Clytia hemisphaericaexon
TCONS_00015417-exon-sc0000211-1491911889:69261..69546TCONS_00015417-exon-sc0000211-1491911889:69261..69546Clytia hemisphaericaexon
TCONS_00015417-exon-sc0000211-1510915933:69261..69546TCONS_00015417-exon-sc0000211-1510915933:69261..69546Clytia hemisphaericaexon
TCONS_00015417-exon-sc0000211-1575043694:69261..69546TCONS_00015417-exon-sc0000211-1575043694:69261..69546Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000211supercontigsc0000211:68140..69546 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0710398	0.082484	0.0806977	0	0	0	0.087683	0	0	0.147613	0	0	0	0.633038	0	0	0.16816	1.08997	2.6407	0.14087	0	0.000518662	0	0	2.30142	0.199782	0	0.00050887	0.329523
Blast
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BLAST of TCONS_00015417 vs. Swiss-Prot (Human)
Match: MLRV (Myosin regulatory light chain 2, ventricular/cardiac muscle isoform OS=Homo sapiens GN=MYL2 PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 3.252e-28
Identity = 60/158 (37.97%), Postives = 85/158 (53.80%), Query Frame = 3 
Query:  138 KRRDRRRTTNVFAKLSQEKIQTYKEIFTMLDGDADSIISKKDLSTMFTSLGMTDMTEQKINEMIAESSGTLNFTAFLAMFAQMTCDMDSDETIRNAFLVLD-NGNGVCDAIEFQHLLVTYGNDRLSHDETQNIMRNIPVDVNGMMDVKQASKLFTFNE 608
            K+R     +NVF+   Q +IQ +KE FT++D + D  I K DL   F +LG  ++  ++I+EMI E+ G +NFT FL MF +     D +ETI NAF V D  G GV  A   + +L T   +R S +E   +    P DV G +D K    + T  E
Sbjct:    7 KKRAGGANSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFAALGRVNVKNEEIDEMIKEAPGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGVLKADYVREMLTTQA-ERFSKEEVDQMFAAFPPDVTGNLDYKNLVHIITHGE 163
The following BLAST results are available for this feature:
BLAST of TCONS_00015417 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MLRV3.252e-2837.97Myosin regulatory light chain 2, ventricular/cardi... [more]
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