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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015422 ID=TCONS_00015422|Name=TCONS_00015422|organism=Clytia hemisphaerica|type=transcript|length=1933bpRun BLAST on NCBI protein sequence of TCONS_00015422-protein >TCONS_00015422-protein ID=TCONS_00015422-protein|Name=TCONS_00015422-protein|organism=Clytia hemisphaerica|type=polypeptide|length=599bp MVGKITITSVNVCCHRLNTIVNPSNNTTRWKQIKLTIRNNPTYALYTGLLRun BLAST on NCBI transcript from alignment at sc0000211:204628..217620+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015422 ID=TCONS_00015422|Name=TCONS_00015422|organism=Clytia hemisphaerica|type=transcript|length=12993bp|location=Sequence derived from alignment at sc0000211:204628..217620+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000211:204628..217620+ >TCONS_00015422 ID=TCONS_00015422|Name=TCONS_00015422|organism=Clytia hemisphaerica|type=CDS|length=16200bp|location=Sequence derived from alignment at sc0000211:204628..217620+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00015422 vs. Swiss-Prot (Human)
Match: ENTP7 (Ectonucleoside triphosphate diphosphohydrolase 7 OS=Homo sapiens GN=ENTPD7 PE=2 SV=1) HSP 1 Score: 459.914 bits (1182), Expect = 2.555e-153 Identity = 229/522 (43.87%), Postives = 319/522 (61.11%), Query Frame = 2
Query: 311 YKHTISSYENKNIHDEQTSKFNYGVVIDCGSSGSRVFIYYWPPHTGKKNELLKIKQMIDLDGNPVRLKIKPGISSFGDKPQNASNYLLPLLRFAAHHIPRNKHRETPLYILATAGMRLLPKHKQFAIMENVRKQIPTLCDFFFTNSQAEVISGKQEGIYLWIATNYILNRFDHKHIGEEH-------NRQNTVGTIEIGGASFQIAYEIPSNVSI--------PHDLGATINLGCDVHAGDHEYKIYVTTFLGYGADVARKNYIKYTYNN--NRDKVIRHET-------ILDPCLPMDLVDEHTVEGVKFKVTGTGEYERCEYLMKSFVNNQTVKCVDPPCSFNGVHQSPINYKEAEFYGFAEFWYSTNDVLRIGGDYLYSKIQNSAKEHCKTRWAIHKRHYAMGLYPK-ADDYRFKYQCFKSAWVTTVFHEGLKFPMDYKGLKTVQMIDGKEVQWTLGALLYRTRFLPLKDIKSHNGRSVAKAYQGETWFILHQGFYPILLF-CVLATVAAVLYYFHRLKK 1798
Y+ ++ D + NYG+V+DCGSSGSR+F+Y+WP H G ++LL IKQM D + PV KIKPGIS+ D P++AS+YL PLL FAA H+P KH+ETPLYIL TAGMRLLP+ KQ AI+ ++ K +P DF F+ SQAEVISGKQEG+Y WI N++L RFDH+ + R+ TVG +++GGAS QIAYE+P++ S+ L A NLGCDV +H Y++YVTTFLG+G + AR+ Y N N+++++ +T LDPCLP+ L D V G G++ C ++ + S NG++QSPI++ +EFYGF+EF+Y T DVLRIGG Y +A+++C W++ + + GL+ AD++R KYQCFKSAW+ V HEG FP DY L+T Q++ +EVQWTLGA+LY+TRFLPL+D++ R +WF L + L F C+L + A+ Y RL++
Sbjct: 62 YERYLARVGELEATDTEDPNLNYGLVVDCGSSGSRIFVYFWPRHNGNPHDLLDIKQMRDRNSQPVVKKIKPGISAMADTPEHASDYLRPLLSFAAAHVPVKKHKETPLYILCTAGMRLLPERKQLAILADLVKDLPLEFDFLFSQSQAEVISGKQEGVYAWIGINFVLGRFDHEDESDAEATQELAAGRRRTVGILDMGGASLQIAYEVPTSTSVLPAKQEEAAKILLAEFNLGCDVQHTEHVYRVYVTTFLGFGGNFARQRYEDLVLNETLNKNRLLGQKTGLSPDNPFLDPCLPVGLTDVVERNSQVLHVRGRGDWVSCGAMLSPLLARSNTS----QASLNGIYQSPIDFNNSEFYGFSEFFYCTEDVLRIGGRYHGPTFAKAAQDYCGMAWSVLTQRFKNGLFSSHADEHRLKYQCFKSAWMYQVLHEGFHFPYDYPNLRTAQLVYDREVQWTLGAILYKTRFLPLRDLRQEGVRQAHG-----SWFRLSFVYNHYLFFACILVVLLAIFLYLLRLRR 574 The following BLAST results are available for this feature:
BLAST of TCONS_00015422 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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