TCONS_00015434 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015434
Unique NameTCONS_00015434
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2070

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015434 ID=TCONS_00015434|Name=TCONS_00015434|organism=Clytia hemisphaerica|type=transcript|length=2070bp
TTCGAATGAACAAAATTTCGATGGACAACCCTCAAGAGAGCGAGGAGACG
GTCATTGATAGCGGTGTGGTGGCGGCAATCCAAAATGAATGTGTGCCTAT
TGAAGCTGACCTGGtagaatttgagtttttacCAGAACTCTCAGAGGAGG
TGGCAACAGAGGAACGACCTATCAAAATTGCTGACTACATTGCTTTCAGG
TCGTACGATTTGTTTAATGAAACATTCAAAGgttatcaaaaatcttcgaT
GGCGGCTTTCTGTACAGCAGCCAACTCAAGAAATTTTAGCCAATGTACCA
CACTGAAGGAAATCCTTGACGAACCAAAGAAGGAGAAATTAGAAAAAGGT
ACCGGATGTGGATATCCATTCATTCGATGGGAAGTCGGTACTGGAGAACT
CCCTATACCTTTTCTAGGCTTCCCTTTCATTATTGTTGGCAACTCAAGAT
ATATGTGCAGTCAAGGGAAGGACATCAACGTCTCTACTAAAGACAAAGTG
CGCCAAAAGAGACTGTCAATGGGTGAAACTGTATACACTAGAAATTTAGC
AAGACCGACAAAAAAGATGGGATGCCCAGTTCGAATGGTCTGCAAGAAAC
TGTTTGTTTTTCCAGACTTTATCATCAACAAAGACACCAGAAAGAATCGT
ACCAGCATTTCTGCTAAGCTCAGGAAATGTTTTGACGAATACTCTAAAGC
TGTAGAAGAAGGGAATTGCCCTGCTGACCAAAACCTCGGTTACTTGTTGT
ACGTCACCAAGTTTCCAAAACCGAACAATCATCAGTTCCATTTGGAATTC
TCCAACACTCTGAATGTAAACAACGAAAACACAAATGAGGACCAGGAGCA
TGAAGATTGCCAAAAACTTTGTATGGGCGCGAAATTTGATACTGTCAAAG
ATATGGAGTCAGCTTTGCGCAAATACAAAATGGACAATAACACTCGTCTC
TATTCTGATATCAAAGAAGTAGTTTTGTTAGAGCCGAAGGGACCCTTAAT
CTATAAATCAATCACATACAAATGTATGCACGTGGTCTCTGTTCCTCATA
AGAAGAAAAAGAACAGGCGCACTTTCAAGCAAGGATGCGAGATGCACATT
CGTTTCGGAGTATCAGAGGACGGTTCACAACTGGTCGTCAAATCCATGTC
GGAAGAACACAATCACGAAATTAACGAGGAAACGATCGTGAAAGAAGCCT
TACACCCAGATCTTTGTGTTTACGTTTCCAAATTGGTCTGGCAGGATCTC
CACATCTCTATCGATGACGTCAAAGCCAAACTGGAAGATTACGTGCTCAG
CGTCATGTTCAAAGGACAACAGCCGCCCCCACGAACACGACGTCAATATT
TCCCGTCTAAAAAGCAAGTTCGTTATTTCATGGCCAAAGCGAAGACCTCA
TTGAACATTTCACCTGAAGCCCAACAGAAGTTGGAGTCGTTGATGGAGCG
ATTAAAAGAAGCACGATCGGACGAGAAAATGGTGTCCAATTTTCACGTTC
AAAACGTTATGAGCGGCTTCGATTTGAACAATGAAGAAAGCATGGAAGAA
GACGCAGCATCGCAATCCCTTGGTGGTTTGAACGAACAGAACGCCAAATT
GTTGTTCTGTCACCAGACCCCGCAGCAACAACGTCTCATGCGACGCTACA
ACACGCAAGTCATTATGACGCAGATATCCGACCTCCATTCTAAGATTCCA
TTTCCCTTGTTTTGTTTATACGTGCAAACGAATGTAGACTTTCAATTGGT
GGGCGAATTCATTTGTCAAGCGAACGACCACATCATGATCGAGGAAGGCT
TGCAGACCATCAAAGAATGGAACCCTGGGTGGAATCCCAAATTCGTGGTC
GTCGATTTTGAGGACCAACAGATTACAGCTGTCGAAAACGCTTTTCAAGG
AGCGTTTGCTTTAGTATCAGATGCGTCTCGCGAAAAAGCTTGGCATGAAT
GGCTCGATATGGAATCCAACGGTGTGGTCGAATTCAAAGAGGATGTCATG
AAATATCTAGACGCTATCGCTTTTTCATACTCCGAAGAAACACTCAACAA
AGCGGCGCGAGAACTTGAAG
Run BLAST on NCBI

transcript from alignment at sc0000211:256023..259190+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015434 ID=TCONS_00015434|Name=TCONS_00015434|organism=Clytia hemisphaerica|type=transcript|length=3168bp|location=Sequence derived from alignment at sc0000211:256023..259190+ (Clytia hemisphaerica)
TTCGAATGAACAAAATTTCGATGGACAACCCTCAAGAGAGCGAGGAGACG
GTCATTGATAGCGGTGTGGTGGCGGCAATCCAAAATGAATGTGTGCCTAT
TGAAGCTGACCTGGtagaatttgagtttttacCAGAACTCTCAGAGGAGG
TGGCAACAGAGGAACGACCTATCAAAATTGCTGACTACATTGCTTTCAGG
TCGTACGATTTGTTTAATGAAACATTCAAAGgttatcaaaaatcttcgaT
GGCGGCTTTCTGTACAGCAGCCAACTCAAGAAATTTTAGCCAATGTAGTA
AGTATACTTTTGTATTTACAACGATATCTTTCTTATTTCAACCCTGAACT
GATCTCTCACTGATTCAATTATTGAAAGACCTTTAGCTGGTGAAGTGAAC
GGTTTTATTCTGCGTTATGAAATAATTATCACTCTGATCCTTAAACTTTG
TTTTAATTCTTTTATCCAACAGCCACACTGAAGGAAATCCTTGACGAACC
AAAGAAGGAGAAATTAGAAAAAGGTACCGGATGTGGATATCCATTCATTC
GATGGGAAGTCGGTACTGGAGAACTCCCTATACCTTTTCTAGGCTTCCCT
TTCATTATTGTTGGCAACTCAAGATATATGTGCAGTCAAGGGAAGGACAT
CAACGTCTCTACTAAAGACAAAGTGCGCCAAAAGAGACTGTCAATGGGTG
AAACTGTATACACTAGAAATTTAGCAAGACCGACAAAAAAGATGGGATGC
CCAGTTCGAATGGTCTGCAAGAAACTGTTTGTTTTTCCAGACTTTATCAT
CAACAAAGACACCAGAAAGAATCGTACCAGCATTTCTGCTAAGCTCAGGA
AATGTTTTGACGAATACTCTAAAGCTGTAGAAGAAGGGAATTGCCCTGCT
GACCAAAACCTCGGTTACTTGTTGTACGTCACCAAGTTTCCAAAACCGAA
CAATCATCAGTTCCATTTGGAATTCTCCAACACTCTGAATGTAAACAACG
AAAACACAAATGAGGACCAGGAGCATGAAGATTGCCAAAAACTTTGTATG
GGCGCGAAATTTGATACTGTCAAAGATATGGAGTCAGCTTTGCGCAAATA
CAAAATGGACAATAACACTCGTCTCTATTCTGATATCAAAGAAGTAGTTT
TGTTAGAGCCGAAGGGACCCTTAATCTATAAATCAATCACATACAAATGT
ATGCACGTGGTCTCTGTTCCTCATAAGAAGAAAAAGAACAGGCGGTAAGC
TGGCTCAATCTTCTACGGATTGCCTTTCGGAATGATGCTGTGGTTAATGT
TGCTGCGTGGAACGAAACCATCTTTTGCGCCCGCGAATAATCGAGAACGG
CAACGGAGAAAACTGTCTTTTTCTTAAGTGTTTATTCTAAAGTTATTGAT
GTATGTTAATCACATAAAAATGTGATCTCTTActattttttcatttgtaa
aCTTTCCTGTTCACTTTTGCAGCACTTTCAAGCAAGGATGCGAGATGCAC
ATTCGTTTCGGAGTATCAGAGGACGGTTCACAACTGGTCGTCAAATCCAT
GTCGGAAGAACACAATCACGAAATTAACGAGGTAAGTCAAGTCAAGTTGT
TCTTAAACGTTCAGAATTTAGAAATACtccttggtcaaaattttgaacgC
GAAACTAGAAGTATTCGCCAAACGAAAGTATAATGTACTCAAATTAAAGC
ATGTCGATGTCCTAACCGTTcgtaagggaactaatttttcaCGAGAacta
atttgagaaaatttggaCGAAACTCATCAAGTCACCATAACAATTTCTCT
GCGAGATTTGANAAGAAAATTTGGACGAAACTCGTCAAGTCACCATAACA
ATTTCTCTGcgagatttgattaaaaaaattcctcCAAATGAATTTCAAAA
GATATCTCTTCCGTAATTATTGATTAATGACCTCTCATTCTCTTTTCTTT
ATTATCTTGAGCGTtagatgtttttttcttcttcatctacAGGAAACGAT
CGTGAAAGAAGCCTTACACCCAGATCTTTGTGTTTACGTTTCCAAATTGG
TCTGGCAGGATCTCCACATCTCTATCGATGACGTCAAAGCCAAACTGGAA
GATTACGTGCTCAGCGTCATGTTCAAAGGTTAGTTCGCTCAACTGCTGTT
TGCAAAGCCACATTCCGAATATATCTATTCGCTGACTATTCTTACTCCCA
AATTGCTTTTCCAATTGCGAGTGTTCGGTTATGTTAAAGGTTATTTTGTC
AGTCTACCACATTGTCTAccagtacacatttttttatattgatattTATT
ATATACTTAAAGGACAACAGCCGCCCCCACGAACACGACGTCAATATTTC
CCGTCTAAAAAGCAAGTTCGTTATTTCATGGCCAAAGCGAAGACCTCATT
GAACATTTCACCTGAAGCCCAACAGAAGTTGGAGTCGTTGATGGAGCGAT
TAAAAGAAGCACGATCGGACGAGAAAATGGTGTCCAATTTTCACGTTCAA
AACGTTATGAGCGGCTTCGATTTGAACAATGAAGAAAGCATGGAAGAAGA
CGCAGCATCGCAATCCCTTGGTGGTTTGAACGAACAGAACGCCAAATTGT
TGTTCTGTCACCAGACCCCGCAGCAACAACGTCTCATGCGACGCTACAAC
ACGCAAGTCATTATGACGCAGATATCCGACCTCCATTCTAAGATTCCATT
TCCCTTGTTTTGTTTATACGTGCAAACGAATGTAGACTTTCAATTGGTGG
GCGAATTCATTTGTCAAGCGAACGACCACATCATGATCGAGGAAGGCTTG
CAGACCATCAAAGAATGGAACCCTGGGTGGAATCCCAAATTCGTGGTCGT
CGATTTTGAGGACCAACAGATTACAGCTGTCGAAAACGCTTTTCAAGGTA
ACTAACTCATTTATGGATtaccatttttatttcataAGTCTAGCGTAAAT
AAAAGTGAATTCCTTGATTGATGATCCAAATTTGAACCTTTTTTTAGGAG
CGTTTGCTTTAGTATCAGATGCGTCTCGCGAAAAAGCTTGGCATGAATGG
CTCGATATGGAATCCAACGGTGTGGTCGAATTCAAAGAGGATGTCATGAA
ATATCTAGACGCTATCGCTTTTTCATACTCCGAAGAAACACTCAACAAAG
CGGCGCGAGAACTTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008619XLOC_008619Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015434-exon-sc0000211-1491911889:256023..256319TCONS_00015434-exon-sc0000211-1491911889:256023..256319Clytia hemisphaericaexon
TCONS_00015434-exon-sc0000211-1510915933:256023..256319TCONS_00015434-exon-sc0000211-1510915933:256023..256319Clytia hemisphaericaexon
TCONS_00015434-exon-sc0000211-1575043694:256023..256319TCONS_00015434-exon-sc0000211-1575043694:256023..256319Clytia hemisphaericaexon
TCONS_00015434-exon-sc0000211-1491911889:256495..257266TCONS_00015434-exon-sc0000211-1491911889:256495..257266Clytia hemisphaericaexon
TCONS_00015434-exon-sc0000211-1510915933:256495..257266TCONS_00015434-exon-sc0000211-1510915933:256495..257266Clytia hemisphaericaexon
TCONS_00015434-exon-sc0000211-1575043694:256495..257266TCONS_00015434-exon-sc0000211-1575043694:256495..257266Clytia hemisphaericaexon
TCONS_00015434-exon-sc0000211-1491911889:257495..257603TCONS_00015434-exon-sc0000211-1491911889:257495..257603Clytia hemisphaericaexon
TCONS_00015434-exon-sc0000211-1510915933:257495..257603TCONS_00015434-exon-sc0000211-1510915933:257495..257603Clytia hemisphaericaexon
TCONS_00015434-exon-sc0000211-1575043694:257495..257603TCONS_00015434-exon-sc0000211-1575043694:257495..257603Clytia hemisphaericaexon
TCONS_00015434-exon-sc0000211-1491911889:258015..258150TCONS_00015434-exon-sc0000211-1491911889:258015..258150Clytia hemisphaericaexon
TCONS_00015434-exon-sc0000211-1510915933:258015..258150TCONS_00015434-exon-sc0000211-1510915933:258015..258150Clytia hemisphaericaexon
TCONS_00015434-exon-sc0000211-1575043694:258015..258150TCONS_00015434-exon-sc0000211-1575043694:258015..258150Clytia hemisphaericaexon
TCONS_00015434-exon-sc0000211-1491911889:258335..258919TCONS_00015434-exon-sc0000211-1491911889:258335..258919Clytia hemisphaericaexon
TCONS_00015434-exon-sc0000211-1510915933:258335..258919TCONS_00015434-exon-sc0000211-1510915933:258335..258919Clytia hemisphaericaexon
TCONS_00015434-exon-sc0000211-1575043694:258335..258919TCONS_00015434-exon-sc0000211-1575043694:258335..258919Clytia hemisphaericaexon
TCONS_00015434-exon-sc0000211-1491911889:259020..259190TCONS_00015434-exon-sc0000211-1491911889:259020..259190Clytia hemisphaericaexon
TCONS_00015434-exon-sc0000211-1510915933:259020..259190TCONS_00015434-exon-sc0000211-1510915933:259020..259190Clytia hemisphaericaexon
TCONS_00015434-exon-sc0000211-1575043694:259020..259190TCONS_00015434-exon-sc0000211-1575043694:259020..259190Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000211supercontigsc0000211:256023..259190 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.0035574	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015434 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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