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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015439 ID=TCONS_00015439|Name=TCONS_00015439|organism=Clytia hemisphaerica|type=transcript|length=1049bp
TTAGGACCCTCTACTCCAGACCCTCTGAAATCAAAAAGCCCCTTAAAACG
CTATTTTTACTTGTCTTCATTCCGTAAACTAGAGAAGAGATGTTGAGGAA
CAAAAAAGTTGTATAGAAAACTACCAACCCTCTAGGCTGCTCTAAGTGGT
GCTACCCGTACTCAGGATCTGGtatatttgaacattttttgttAGTAGAA
TATTGGTTTTAATCTGACACAGAGATGATGTACCCTAAGTAACAATGAGT
GACACTAAATCAAAAAAGTACATTCAAGTTGAAGATGTATTTCCAGAGGA
AACAGCTCTCCTAGTGCGGGAGATTGGACAAAATGCAGTTTGGTCCTTGT
CATCTTGCAAAGTTGGATCAGGCGTCAACCAGCTTCGTGATAATGACTTG
ACGACATACTGGCAATCAGATGGGCCGCAGCCACACCTCATCAATATACA
ATTTCCAAAGAGAACAATTATCAGTTACATAAGTATTTATACTGAGTATA
AACAGGATGAAAGTTACACACCAAACAAAATCTCCATCCGGGTTGGCAAC
GATCCCCATGATCTTCAACAGTTCGAGTTATTGGAACTGGATGAGCCAAG
TGGCTGGATCAATACAGAACTGTGTAAAGacaatcaaaatatcaaaactt
tcATGATACAAATTGCTGTGTTAGGTAACCACCAAAATGGGCGTGATACA
CACTTACggcaaatcaaaatatttggtCCAAAACACAATACTGTTGACGT
GAAGGTTCCTTCCATAGAACAATTTGTTTCTGTTGACATGGCACAGTTCT
CATGTATTAGGTGACGTAAATGTTTACCGAAATCAATTATTGTACTGAAT
GTTGTTTTTATCATTAGATTAACATCGtcttctttttttgtaaaatattg
taaaGTAACAACCTCCGTATTATTCTTTCTCGACCTTTTCACTTCAATCA
GttctcttgggtacctaatttATTGAGTGTGCTTACTCTTAGATAGGTGC
CTAATTTATTGGGTGCATTTACCAAGTTAAAATTCCAATCATAATTGAG Run BLAST on NCBI transcript from alignment at sc0000211:304339..305936+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015439 ID=TCONS_00015439|Name=TCONS_00015439|organism=Clytia hemisphaerica|type=transcript|length=1598bp|location=Sequence derived from alignment at sc0000211:304339..305936+ (Clytia hemisphaerica)
TTAGGACCCTCTACTCCAGACCCTCTGAAATCAAAAAGCCCCTTAAAACG
CTATTTTTACTTGTCTTCATTCCGTAAACTAGAGAAGAGATGTTGAGGAA
CAAAAAAGTTGTATAGAAAACTACCAACCCTCTAGGCTGCTCTAAGTGGT
GCTACCCGTACTCAGGATCTGGtatatttgaacattttttgttAGTAGAA
TATTGGTTTTAATCTGACACAGAGATGATGTACCCTAAGTAACAATGAGT
GACACTAAATCAAAAAAGTACATTCAAGTTGAAGATGTATTTCCAGAGGA
AACAGCTCTCCTAGTGCGGGAGATTGGACAAAATGCAGTTTGGTCCTTGT
CATCTTGCAAAGTTGGATCAGGCGTCAACCAGCTTCGTGATAATGACTTG
ACGACATACTGGCAATCAGATGGGCCGCAGCCACACCTCATCAATATACA
ATTTCCAAAGAGAACAATTATCAGTTACATAAGTATTTATACTGAGTATA
AACAGGATGAAAGTTACACACCAAACAAAATCTCCATCCGGGTTGGCAAC
GATCCCCATGATCTTCAACAGTTCGAGTTATTGGAACTGGATGAGCCAAG
TGGCTGGATCAATACAGAACTGTGTAAAGacaatcaaaatatcaaaactt
tcATGATACAAATTGCTGTGTTAGGTAACCACCAAAATGGGCGTGATACA
CACTTACggcaaatcaaaatatttggtCCAAAACACAATACTGTTGACGT
GAAGGTCCCTTCCATAGAACAATTTGTTTCTGTTGACATGGCACAGTTCT
CATGTATTAGGTGACGTATATGTTTACCGAAATCAATTATTGTACTGAGT
GTTGTTTTTATCATTAGATTAACATCNCAAAATGCAGTTTGGTCCTTGTC
ATCTTGCAAAGTTGGATCAGGCGTCAACCAGCTTCGTGATAATGACTTGA
CGACATACTGGCAATCAGATGGGCCGCAGCCACACCTCATCAATATACAA
TTCCCGAAGAGAACAATTATCAGTTACATAAGTATTTATACTGAGTATAA
ACAGGATGAAAGTTACACACCAAACAAAATCTCCATCCGGGTTGGCAACG
ATCCCCATGATCTTCAACAGTTTGAGTTATTGGAACTGGATGAGCCAAGT
GGCTGGATCAATACAGAACTGTGTAAAGacaatcaaaatatcaaaacttt
cATGATACAAATTGCTGTGTTAGGTAATCACCAAAATGGACGCGATACAC
ACTTACggcaaatcaaaatatttggtCCAAAACACAATACTGTTGACGTG
AAGGTTCCTTCCATAGAACAATTTGTTTCTGTTGACATGGCACAGTTCTC
ATGTATTAGGTGACGTAAATGTTTACCGAAATCAATTATTGTACTGAATG
TTGTTTTTATCATTAGATTAACATCGtcttctttttttgtaaaatattgt
aaaGTAACAACCTCCGTATTATTCTTTCTCGACCTTTTCACTTCAATCAG
ttctcttgggtacctaatttATTGAGTGTGCTTACTCTTAGATAGGTGCC
TAATTTATTGGGTGCATTTACCAAGTTAAAATTCCAATCATAATTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015439-exon-sc0000211-1491911889:304339..305092 | TCONS_00015439-exon-sc0000211-1491911889:304339..305092 | Clytia hemisphaerica | exon |
| TCONS_00015439-exon-sc0000211-1510915933:304339..305092 | TCONS_00015439-exon-sc0000211-1510915933:304339..305092 | Clytia hemisphaerica | exon |
| TCONS_00015439-exon-sc0000211-1575043694:304339..305092 | TCONS_00015439-exon-sc0000211-1575043694:304339..305092 | Clytia hemisphaerica | exon |
| TCONS_00015439-exon-sc0000211-1491911889:305642..305936 | TCONS_00015439-exon-sc0000211-1491911889:305642..305936 | Clytia hemisphaerica | exon |
| TCONS_00015439-exon-sc0000211-1510915933:305642..305936 | TCONS_00015439-exon-sc0000211-1510915933:305642..305936 | Clytia hemisphaerica | exon |
| TCONS_00015439-exon-sc0000211-1575043694:305642..305936 | TCONS_00015439-exon-sc0000211-1575043694:305642..305936 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000211 | supercontig | sc0000211:304339..305936 + |
Blast
BLAST of TCONS_00015439 vs. Swiss-Prot (Human)
Match: APC10 (Anaphase-promoting complex subunit 10 OS=Homo sapiens GN=ANAPC10 PE=1 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 1.662e-52 Identity = 97/167 (58.08%), Postives = 123/167 (73.65%), Query Frame = 2
Query: 314 VREIGQNAVWSLSSCKVGSGVNQLRDNDLTTYWQSDGPQPHLINIQFPKRXXXXXXXXXXEYKQDESYTPNKISIRVGNDPHXXXXXXXXXXXXPSGWINTELCKDNQN-IKTFMIQIAVLGNHQNGRDTHLRQIKIFGPKHNTVDVKVPSIEQFVSVDMAQFSCIR 811
VREIG AVWSLSSCK G GV+QLRD++L TYWQSDG QPHL+NIQF ++T + + IY +YK DESYTP+KIS+RVGN+ H+LQ+ LEL EPSGWI+ L +++ +TFMIQIAVL NHQNGRDTH+RQIKI+ P + K P + ++D + IR
Sbjct: 22 VREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFP---RCTTIDFMMYRSIR 185
The following BLAST results are available for this feature:
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