|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015447 ID=TCONS_00015447|Name=TCONS_00015447|organism=Clytia hemisphaerica|type=transcript|length=1589bp
TTTTCATTTAGCTAGAAGAATGAAAGACAAACTGTCGATTTGGACAGTAA
ATTGTTTCTCTCGATTTTTTCCGAACATCTTGCCTTTTTGTACTAAtact
gaaattttgtgaaacttTACCTGTATTTACGTTGCTGACTCCTTGACTTG
CTTCTTGGACTACTCTACCTGGACTTAACTCTGGTTAGTACGTTGGATTG
GATTTTGACCCCTTGACTTGCTTCTTGGACTACTCTACCTTGACTTAACT
CTGGTTAATATATTGGATTGGATTTATACGTTGCTGACCCGATGACTTGC
TTCTTGGACTACTCTACCTGGACTTAACTCTGGTTAGTACGTTGGATTGG
ATTTTGACCCCTTGACTTGCTTCTTGGACTACTCTACCTTGACTTAACTC
TGGTTAATATATTGGATTGGATTTATACGTTGCTGACCCGATGACTTGCT
TCTTGGACTACTCTACCTGGACTTAACTCTGGTTAGTACGTTGGATTGGA
TTTTGACCCCTTGACTTGCTTCTTGGACTACTCTACCTTGACTTAACTCT
GGTTAATATATTGGATTGGATTTATACGTTGCTGACCCGATGACTTGCTT
CTTGGACTACTCTACCTGGACTTAACTCTGGTTAATACGTTGGATTGGAT
TTTGACCCCTTGACTTGCTTCTTGGACTACTCTACCCGGACTAAACTCTG
TTTAATTCGTTGGATTGGATTTATACGTTGCTGACCCCTTGACTTGCTTC
TTGGACTACTCTACCCGGACAAAACTCTGGTTAATTCGTTGGATTGGATT
TATACGTTGCTGACCCCTTGACTTGGTTCTTGGAGTACTCTACCTGgact
taaacataaaaaatctaAAGCATGAAATGCAGTCATTAATGGACCATGTA
TATTGTAAAACCGACACTCAAACTTTGGAACCTGATGCTGCTGCTTCCAA
TGGCCCGGTAAAATGGACTGAAAGAGGTTATGGTCTGTGCAGTAATTGTA
ACAATAGTTACAAAAATAGTAAGAAACCAAGATTTTGCAGCTGTGGCTTT
GAGCTTGGTGGTAGCTATGCAAATAATTTGGACACTCCATCATCCAAAGC
AAACAATAAGACTTCCACTGCCGTCCCAAAATCAGTTACCATTTATGGAA
CACCAGAGTCTGGAACCTTACGCTCTGTTGCAACAAGCAATAGTCATGac
agggaatttttttttatttcaggaaacAAAGTATCCTGCCATGCAAAAAA
ATGTTCAAGACTAAGAGCCACATTTCGTGCCTCGAGAGAGAATTTTTATT
GTCAGCACTCTTCATATGAAACCTCGCCGGAACTTTATCGTAATTTTAGT
TTTTCTCTGGAAGAAATAACCCTTTTTACACCTGACGAACATAGACAAAC
AGAAATGAGGAATCTCAATGGGACAGATATTAATTTTCCAATTTgtttga
aactttcaaataatAGTTATGCTGTTAAAGCTCTAGTTTTTACTGGTGCA
CCACTTGCTTACACCCACGTTAAAGTCACCTCCTCAAAATCATCCACATG
ACGAGATGTAGTAAAGCTGAATTGCATGCTTAATAGTTG Run BLAST on NCBI protein sequence of TCONS_00015447-protein >TCONS_00015447-protein ID=TCONS_00015447-protein|Name=TCONS_00015447-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
MQSLMDHVYCKTDTQTLEPDAAASNGPVKWTERGYGLCSNCNNSYKNSKK
PRFCSCGFELGGSYANNLDTPSSKANNKTSTAVPKSVTIYGTPESGTLRS
VATSNSHDREFFFISGNKVSCHAKKCSRLRATFRASRENFYCQHSSYETS
PELYRNFSFSLEEITLFTPDEHRQTEMRNLNGTDINFPICLKLSNNSYAV
KALVFTGAPLAYTHVKVTSSKSST Run BLAST on NCBI transcript from alignment at sc0000211:439554..441142+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015447 ID=TCONS_00015447|Name=TCONS_00015447|organism=Clytia hemisphaerica|type=transcript|length=1589bp|location=Sequence derived from alignment at sc0000211:439554..441142+ (Clytia hemisphaerica)
TTTTCATTTAGCTAGAAGAATGAAAGACAAACTGTCGATTTGGACAGTAA
ATTGTTTCTCTCGATTTTTTCCGAACATCTTGCCTTTTTGTACTAAtact
gaaattttgtgaaacttTACCTGTATTTACGTTGCTGACTCCTTGACTTG
CTTCTTGGACTACTCTACCTGGACTTAACTCTGGTTAGTACGTTGGATTG
GATTTTGACCCCTTGACTTGCTTCTTGGACTACTCTACCTTGACTTAACT
CTGGTTAATATATTGGATTGGATTTATACGTTGCTGACCCGATGACTTGC
TTCTTGGACTACTCTACCTGGACTTAACTCTGGTTAGTACGTTGGATTGG
ATTTTGACCCCTTGACTTGCTTCTTGGACTACTCTACCTTGACTTAACTC
TGGTTAATATATTGGATTGGATTTATACGTTGCTGACCCGATGACTTGCT
TCTTGGACTACTCTACCTGGACTTAACTCTGGTTAGTACGTTGGATTGGA
TTTTGACCCCTTGACTTGCTTCTTGGACTACTCTACCTTGACTTAACTCT
GGTTAATATATTGGATTGGATTTATACGTTGCTGACCCGATGACTTGCTT
CTTGGACTACTCTACCTGGACTTAACTCTGGTTAATACGTTGGATTGGAT
TTTGACCCCTTGACTTGCTTCTTGGACTACTCTACCCGGACTAAACTCTG
TTTAATTCGTTGGATTGGATTTATACGTTGCTGACCCCTTGACTTGCTTC
TTGGACTACTCTACCCGGACAAAACTCTGGTTAATTCGTTGGATTGGATT
TATACGTTGCTGACCCCTTGACTTGGTTCTTGGAGTACTCTACCTGgact
taaacataaaaaatctaAAGCATGAAATGCAGTCATTAATGGACCATGTA
TATTGTAAAACCGACACTCAAACTTTGGAACCTGATGCTGCTGCTTCCAA
TGGCCCGGTAAAATGGACTGAAAGAGGTTATGGTCTGTGCAGTAATTGTA
ACAATAGTTACAAAAATAGTAAGAAACCAAGATTTTGCAGCTGTGGCTTT
GAGCTTGGTGGTAGCTATGCAAATAATTTGGACACTCCATCATCCAAAGC
AAACAATAAGACTTCCACTGCCGTCCCAAAATCAGTTACCATTTATGGAA
CACCAGAGTCTGGAACCTTACGCTCTGTTGCAACAAGCAATAGTCATGac
agggaatttttttttatttcaggaaacAAAGTATCCTGCCATGCAAAAAA
ATGTTCAAGACTAAGAGCCACATTTCGTGCCTCGAGAGAGAATTTTTATT
GTCAGCACTCTTCATATGAAACCTCGCCGGAACTTTATCGTAATTTTAGT
TTTTCTCTGGAAGAAATAACCCTTTTTACACCTGACGAACATAGACAAAC
AGAAATGAGGAATCTCAATGGGACAGATATTAATTTTCCAATTTgtttga
aactttcaaataatAGTTATGCTGTTAAAGCTCTAGTTTTTACTGGTGCA
CCACTTGCTTACACCCACGTTAAAGTCACCTCCTCAAAATCATCCACATG
ACGAGATGTAGTAAAGCTGAATTGCATGCTTAATAGTTG Coding sequence (CDS) from alignment at sc0000211:439554..441142+ >TCONS_00015447 ID=TCONS_00015447|Name=TCONS_00015447|organism=Clytia hemisphaerica|type=CDS|length=675bp|location=Sequence derived from alignment at sc0000211:439554..441142+ (Clytia hemisphaerica)
ATGCAGTCATTAATGGACCATGTATATTGTAAAACCGACACTCAAACTTT
GGAACCTGATGCTGCTGCTTCCAATGGCCCGGTAAAATGGACTGAAAGAG
GTTATGGTCTGTGCAGTAATTGTAACAATAGTTACAAAAATAGTAAGAAA
CCAAGATTTTGCAGCTGTGGCTTTGAGCTTGGTGGTAGCTATGCAAATAA
TTTGGACACTCCATCATCCAAAGCAAACAATAAGACTTCCACTGCCGTCC
CAAAATCAGTTACCATTTATGGAACACCAGAGTCTGGAACCTTACGCTCT
GTTGCAACAAGCAATAGTCATGacagggaatttttttttatttcaggaaa
cAAAGTATCCTGCCATGCAAAAAAATGTTCAAGACTAAGAGCCACATTTC
GTGCCTCGAGAGAGAATTTTTATTGTCAGCACTCTTCATATGAAACCTCG
CCGGAACTTTATCGTAATTTTAGTTTTTCTCTGGAAGAAATAACCCTTTT
TACACCTGACGAACATAGACAAACAGAAATGAGGAATCTCAATGGGACAG
ATATTAATTTTCCAATTTgtttgaaactttcaaataatAGTTATGCTGTT
AAAGCTCTAGTTTTTACTGGTGCACCACTTGCTTACACCCACGTTAAAGT
CACCTCCTCAAAATCATCCACATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015447-exon-sc0000211-1491911889:439554..441142 | TCONS_00015447-exon-sc0000211-1491911889:439554..441142 | Clytia hemisphaerica | exon |
| TCONS_00015447-exon-sc0000211-1510915933:439554..441142 | TCONS_00015447-exon-sc0000211-1510915933:439554..441142 | Clytia hemisphaerica | exon |
| TCONS_00015447-exon-sc0000211-1575043694:439554..441142 | TCONS_00015447-exon-sc0000211-1575043694:439554..441142 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000211 | supercontig | sc0000211:439554..441142 + |
Blast
The following BLAST results are available for this feature:
|
