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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015461 ID=TCONS_00015461|Name=TCONS_00015461|organism=Clytia hemisphaerica|type=transcript|length=1688bp
ttcaatcaGAGTATTCAAGAGATAGACAGCGCGTTATGGATGCTCAATTG
AATTAAGACAAACGTAAATGTATTTCCACCAAGGAAGAAATCATCCATCG
CTTCAGTGAGCCATCAGTCGTCTTCATCCATGGAATTTGATGGATTATGT
CCATGGAGATGCGGTCAATCAGTCACCTTTGAAACACTCAACCACCACGT
GTACCAATGCAACAAAGCTAATGCGCATGACCAATGCCCCTTCCAGGTGT
TAGGATGCACTTATGATGGATCAATAGACGTCAAGGAGCACATGCTAATA
GAGAACGCGTCACACGCTAGTCTGTTGGTACCTCACGTCCTCAAAAATAT
GGTCTCACAAGATAAGACCGATTCTGCTATGCAACACCAAGCCGAAGATA
CTGCAGACTTGAGAAGACGTCTGGAAAATGAATCAACTAAGAACTCTATT
TTATCGAACGAAGTATGTCAGTTGAAGAGAGAACTAGCAGAGTCGAATAA
AAAACTTAATTCTTTAGAGAAAGACATGGCAGTGGTTCGATCCACTTTTG
ATGTGCTGCTTCGTGAATTAAACAGTGTGAAAAATCAAGCGGTGTCAGAG
GAGCGCATCAAAAGTGTGGAAGAAACAACGGACAAACTAAAACTGGAGAG
CGCAAATGTGACAAAAAGCGTCGTGGAGAACCACAGCCTGATCATGCGTC
TTGATGAACGAATCAATAACGTCAACTCAAACCTGGGTGACGTCGATTTG
AGACAGCAAATACTAGAGAACACTTCTGTCGGTGGTCGATTCATTTGGAA
AATCGATCGACTGAGATCTCGCATCAAACACTCAGCGTTGGGTAAAGTTG
CTGCTTTACACAGTGCACCGTGTTTTACTAAAAGGTTTGGGTACAAGTTT
TGCACGCGTTTATATTTGAACGGCGACGGAGTGGGTAAAGATACGCACGT
TTCGCTCTTTATTGTCATCATGCGTTCGGAGTACGACGCTCTATTAGAAT
GGCCGTTTCGTCAGAAAGTGACTTTTAATTTGTTTAACTACGCCAACCCG
AACGATTCGTTAAAAGAATCGTTCATACCTGATGTTAGTTCGCCCAGCTT
CAAACGGCCTCATAAAGAAATGAACCTTGCAGCTGGTTGTCCGATGTTCG
TAACGAAGGAACGATTGGAAACGTTCATTTTGGATGATAGTATTTATATA
GAAACTACTGTTGGAGATGCCTGATTCGCCTTATTCTTGTTTTATCATCC
TTCTGATCGAGATATGAATCCACATCTCAGCTTTGACAATCCGTTTTTCG
AGGGTAATCAAGTTCAGGCATTTTCGTTTTAGTTGTATAGGGCAAGTAGA
AAAGCCCATATGATAGGTACCTATATTGCCATAAAGGTTGGCATGATTGC
ATCTTatgagaagaaaaatgaaacaatttaCAGAAAGTCGTTTGTGAAAA
CGGTTTTTGTATTTGACCAGTTCATAGCGAACAGATTCGAAATAAGCATT
TGTATTTTCAAAGCGTATAGTAATGTATGATATTAGTTGAGAGAGTTTTT
TACGTTTTGTTCTTTAATTTTCATATCACTttgtataaatatttttaaaa
atcaaaacggctaatatttttattattattacaattttattatatgaaga
aagagataACACAACGTCATAGTTAAagatacaaaaac Run BLAST on NCBI transcript from alignment at sc0000211:101998..109103- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015461 ID=TCONS_00015461|Name=TCONS_00015461|organism=Clytia hemisphaerica|type=transcript|length=7106bp|location=Sequence derived from alignment at sc0000211:101998..109103- (Clytia hemisphaerica)
TTCAATCAGAGTATTCAAGAGATAGACAGCGCGTTATGGATGCTCAATTG
AATTAAGGTACATATACAATCAATTCAGTGAGTTTACAATTTGTTTTACG
GTTTACCTTTATTGCTCGCCTCTTTTTGGAAATTCATTTTGAAAGGCTCG
TAATGCACACAGATAAAATAAGGAGGTTTCAATCACCTTTTTTGATTATT
TGGAATAAGCTTTTAATTTCTAGAGGTCAGGACGAAAATGTATTTTAAAT
CTTAATTGTTATTGGAATTTCTTCATGTGCGTTGGTGTCGAGACCGATTA
TCTTAACCTGTTCTGTAGATATTTCTCTACCGATAACATATATTATCACC
ATTTTCGCTTGTTTCTTTTCTGTCGCTTATAATGAATCAAAATTTGTGCA
GAATCTTTTTATCAGATCAAAAGAGAGGGGATGCAATTCTTACGAAATTG
AATGTTAAAAGATGACGATGTAGTGATTTGTTGCTCTTAAGCAACTTGAC
ACCTTTCTGGGTATATTTAGTTATGTGGTAACTAGAGAAGTAAGAGAATA
TAAAAAAGAGAAAGTGTTAACACAACTTTTTTGTCCCGACCAAATAAAAT
AACGGAAGGTTAGGTGAAATTGAAAGAATTTATATGTGGAATATCTTACG
ATCTTTTGTTGCTTTTACGTAGCTGCGAAGAGTTGCTGGTGCAGCTGGCC
TTCATANATCTTACGATCTTTTGTTGCTTTTACGTAGCTGCGAAGAGTTG
TTGGTGCAGCTGGCCTTCATCTGATATCGGCCGATGTTTATACTTCTTCG
TTTCCCTATTTTCCATTTTCTATGTTTATTTACGTGTTGCAAAACATGGT
TGAATTGTTTTCGTACGAATTTGCTTTGTTTATTAAGACACCTTTTTCAT
TGCTTGAACAGAACTTATTCTACGGCACATGATATATACTTTTTTGTAAA
CTTTTGAGAAAGATTTTGGTCGAGACGAAGAGCATAAAAAGTAATGTAAA
GCAGAATCTCTCATTTTCTCTCACTTATCAAAGTGTTGTTGTTGTGTAAA
ACGTTTAAGTCGTGTGTTATGGTTAGTAGTTGATGGATCTTGGTAGAAGT
GAGCGGTTCTGTGTGGGCACCTCAAAGATTGTTATAATTGTTAGGGTTGA
AATTGTTTCTCATCCAATTGGTAGTTTGAAGTTGTTTCAAACGAATGCTA
CTGTAGAGTTTATAAAACTTTTCCTCATGCTTAAACGCTCCTGAAGCTTA
GAACTAAGAAAGTATACACTTATTTTTGGTGCTTTTAGTCTAAAAGGTTT
AATACCCTTCTTTATTAGTTTGTCCCATAATTCAAAGTTCAGCCATTCCA
GGCTCAGCATTGTTCTTAAATTGTTCTTATTTTTTACCAATTTTGAGGTT
CATTGTTCTTGTTCGATGTTGTTAAAATTATTCTTGTAAAAAAGAGAGGG
TGTATATACTTTGTCTGGTTTTGAGGCCCGGGTACGATTTCCACTGACAC
CAATATTACTGTGTGTTCATTCGTTTTGGTAAATATAATAATTCATTTTG
TTCGTTCCCTTTTTCAGACAAACGTAAATGTATTTCCACCAAGGAAGAAA
TCATCCATCGCTTCAGTGAGCCATCAGTCGTCTTCATCCATGGAATTTGA
TGGATTATGTCCATGGAGATGCGGTCAATCAGTCACCTTTGAAACACTCA
ACCACCACGTGTACCAATGCAACAAAGCTAATGCGCATGACCAATGCCCC
TTCCAGGTGTTAGGATGCACTTATGATGTGAGTTCTTACAAGGATTTTAG
AAATATGGCCACTTGCTATATATTCCGAAATGATTGTTTGAAGAATTTTC
CTCACTTGCATGGAGTTTGGAAAAAAGCTCTTAGGAGGAGATTTTTTCAA
AGTTGATCCCATGGCTACTACAAGTTACTTTCCAGCAAAGTTTCTGTTTA
AAAGTAAAGTGTTAATGAGCGGAAAATGGATTCTGGGATGAAGCTTTACT
TGATTTTCCTGTTTTTCCAATGTTTTGTCAATACTTTTTACGTCAAATAT
TTAGAAAAGCGCGGCTTAAATTTCAAGTCCCCTCTTAGAAACGAATAACT
TGTGGTTGATTTATAAACAAACTTTGTAATATCTCTCATCTCTATGGAAG
TTCGACTTTCCCCTTTACAATGCAATCTCTCAAATGTTTTTTTTGGTAAC
TGTCTGAGGTCACTGCCCGGCTCTTTCCTTCACTATTACAGCTTTCATTT
CGTACAAGATACAGAAAGCTTCTTTCTACGAAAATTTTCCGCTATGAAAT
GACTGAAGAAAAAACACACTTAAAAAGAATGGAAACGATTGCGTGACAAA
GTGCAAAAGGGTTTGTTTTTAATGAAGTGTTATAACTTCCATTGTTGCTT
CTGTTTATTTATAGGGATCAATAGACGTCAAGGAGCACATGCTAATAGAG
AACGCGTCACACGCTAGTCTGTTGGTACCTCACGTCCTCAAAAATATGGT
CTCACAAGATAAGACCGATTCTGCTATGCAACACCAAGCCGAAGATACTG
CAGACTTGAGAAGACGTCTGGAAAATGAATCAACTAAGAACTCTATTTTA
TCGAACGAAGTATGTCAGTTGAAGAGAGAACTAGCAGAGTCGAATAAAAA
ACTTAATTCTTTAGAGAAAGACATGGCAGTGGTTCGATCCACTTTTGATG
TGCTGCTTCGTGAATTAAACAGTGTGAAAAATCAAGCGGTGTCAGAGGAG
CGCATCAAAAGTGTGGAAGAAACAACGGACAAACTAAAATTGGAGAACGC
AAATGTGACAAAAAGCGTCGTGGAGAACCACAGTCTGATCATGCGTCTCG
ATGAACGAATCAATAACGTCAACTCAAACCTGGGTGACGTCGATTTGAGA
CAACAAATACTAGAGAACACTTCTGTCGGTGGTCGATTCATTTGGAAAAT
CGATCGACTGAGATCTCGCATCAAACACTCAGCAGTGGGTAAGGTCNCCC
CTCTTAGAAACGAATAACTTGTGGTTGATTTATAAACAAACTTTGTAATA
TCTCTCATCTCTATGGAAGTTCGACTTTCCCCTTTACAATGCAATCTCTC
AAATGTTTTTTTTGGTAACTGTCTGAGGTCACTGCCCGGCTCTTTCCTTC
ACTATTACAGCTTTCATTTCGTACAAGATACAGAAAGCTTCTTTCTACGA
AAATTTTCCGCTATGAAATGACTGAAGAAAAAACACACTTAAAAAGAATG
GAAACGATTGCGTGACAAAGTGCAAAAGGGTTTGTTTTTAATGAAGTGTT
ATAACTTCCATTGTTGCTTCTGTTTATTTATAGGGATCAATAGACGTCAA
GGAGCACATGCTAATAGAGAACGCGTCACACGCTAGTCTGTTGGTACCTC
ACGTCCTCAAAAATATGGTCTCACAAGATAAGACCGATTCTGCTATGCAA
CACCAAGCCGAAGATACTGCAGACTTGAGAAGACGTCTGGAAAATGAATC
AACTAAGAACTCTATTTTATCGAACGAAGTATGTCAGTTGAAGAGAGAAC
TAGCAGAGTCGAATAAAAAACTTAATTCTTTAGAGAAAGACATGGCAGTG
GTTCGATCCACTTTTGATGTGCTGCTTCGTGAATTAAACAGTGTGAAAAA
TCAAGCGGTGTCAGAGGAGCGCATCAAAAGTGTGGAAGAAACAACGGACA
AACTAAAACTGGAGAGCGCAAATGTGACAAAAAGCGTCGTGGAGAACCAC
AGCCTGATCATGCGTCTTGATGAACGAATCAATAACGTCAACTCAAACCT
GGGTGACGTCGATTTGAGACAGCAAATACTAGAGAACACTTCTGTCGGTG
GTCGATTCATTTGGAAAATCGATCGACTGAGATCTCGCATCAAACACTCA
GCGTTGGGTAAAGTTGCTGCTTTACACAGTGCACCGTGTTTTACTAAAAG
GTTTGGGTACAAGTTTTGCACGCGTTTATATNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGGCACATGATATATACTTTTTTGTAAACTTTT
GAGAAAGATTTTGGTCGAGACGAAGAGCATAAAAAGTAATGTAAAGCAGA
ATCTCTCATTTTCTCTCACTTATCAAAGTGTTGTTGTTGTGTAAAACGTT
TGAGTCGTGTGTTATGGATGGATCTTGTTGGAAAATAGCGGTTCTGTGTG
GGGTCCTCAAAGATTGTTATAATTGTTAGGGTTGAAATTGTTTTTCATCA
ATTGGTAGTTTGAAGTTGTTTCAAACGAATGCTACTGTAGAGTTTATAAA
ACTTTTCCTCATGCTTAAACGCTCCTGAAGCTTAGAACTAAGAAAGTATA
CACTTATTTTTGGTGCTTTTAGTCTAAAAGGTTTAATACCCTTCTTTATT
AGTTTGTCCCATAATTCAAAGTTCAGCCATTCCAGGCTCAGCATTGTTCT
TAAATTGTTCTTATTTTTTACCAATTTTGAGGTTCATTGTTCTTGTTCGA
TGTTGTTAAAATTATTCTTGTAAAAAAGAGAGGGTGTATATACTTTGTCT
GGTTTTGAGGCCCGGGTACGATTTCCACTGACACCAATATTACTGTGTGT
TCATTCGTTTTGGTAAATATAATAATTCATTTTGTTCGTTCCCTTTTTCA
GACAAACGTAAATGTATTTCCACCAAGGAAGAAATCATCCATCGCTTCAG
TGAGCCATCAGTCGTCTTCATCCATGGAATTTGATGGATTATGTCCATGG
AGATGCGGTCAATCAGTCACCTTTGAAACACTCAACCACCACGTGTACCA
ATGCAACAAAGCTAATGCGCATGACCAATGCCCCTTCCAGGTGTTAGGAT
GCACTTATGATGTAAGTTCTTATAAATTCTTTTAGAAATTTGACCTCTTG
CTATATATTCCGAAATGATTGTCTGAAGAATTTTCCTCACTTGCATGGAG
TTTGGAAAAAAGCTCTTAGGAAGAGATTTCTTTAAAGTTGATCCCATGGC
TACTACAAGTTACCTTCCAGCAAAGTAGAGTGTTAATAAGCGGAAAATGG
ATTCTGGGATGAAGCTTTACTTGATTTTCCTGTTTTTCCAATGTTTTGTC
AATACTTTTTACGTCAAATATTTAGAAAAGCGCGGCTTAAATTTCAAGTC
CCCTCTTAGAAACGAATAACTTGTGGTTGATTTATAAACAAACTTTGTAA
TATCTCTCATCTCTATGGAAGTTCGACTTTCCCCTTTACAATGCAATCTC
TCAAATGTTTTTTTTGGTAACTGTCTGAGGTCACTGCCCGGCTCTTTCCT
TCACTATTACAGCTTTCATTTCGTACAAGATACAGAAAGCTTCTTTCTAC
GAAAATTTTCCGCTATGAAATGACTGAAGAAAAAACACACTTAAAAAGAA
TGGAAACGATTGCGTGACAAAGTGCAAAAGGGTTTGTTTTTAATGAAGTG
TTATAACTTCCATTGTTGCTTCTGTTTATTTATAGGGATCAATAGACGTC
AAGGAGCACATGCTAATAGAGAACGCGTCACACGCTAGTCTGTTGGTACC
TCACGTCCTCAAAAATATGGTCTCACAAGATAAGACCGATTCTGCTATGC
AACACCAAGCCGAAGATACTGCAGACTTGAGAAGACGTCTGGAAAATGAA
TCAACTAAGAACTCTATTTTATCGAACGAAGTATGTCAGTTGAAGAGAGA
ACTAGCAGAGTCGAATAAAAAACTTAATTCTTTAGAGAAAGACATGGCAG
TGGTTCGATCCACTTTTGATGTGCTGCTTCGTGAATTAAACAGTGTGAAA
AATCAAGCGGTGTCAGAGGAGCGCATCAAAAGTGTGGAAGAAACAACGGA
CAAACTAAAACTGGAGAGCGCAAATGTGACAAAAAGCGTCGTGGAGAACC
ACAGCCTGATCATGCGTCTTGATGAACGAATCAATAACGTCAACTCAAAC
CTGGGTGACGTCGATTTGAGACAGCAAATACTAGAGAACACTTCTGTCGG
TGGTCGATTCATTTGGAAAATCGATCGACTGAGATCTCGCATCAAACACT
CAGCGTTGGGTAAAGTTGCTGCTTTACACAGTGCACCGTGTTTTACTAAA
AGGTTTGGGTACAAGTTTTGCACGCGTTTATATTTGAACGGCGACGGAGT
GGGTAAAGATACGCACGTTTCGCTCTTTATTGTCATCATGCGTTCGGAGT
ACGACGCTCTATTAGAATGGCCGTTTCGTCAGAAAGTGACTTTTAATTTG
TTTAACTACGCCAACCCGAACGATTCGTTAAAAGAATCGTTCATACCTGA
TGTTAGTTCGCCCAGCTTCAAACGGCCTCATAAAGAAATGAACCTTGCAG
CTGGTTGTCCGATGTTCGTAACGAAGGAACGATTGGAAACGTTCATTTTG
GATGATAGTATTTATATAGAAACTACTGTTGGAGATGCCTGATTCGCCTT
ATTCTTGTTTTATCATCCTTCTGATCGAGATATGAATCCACATCTCAGCT
TTGACAATCCGTTTTTCGAGGGTAATCAAGTTCAGGCATTTTCGTTTTAG
TTGTATAGGGCAAGTAGAAAAGCCCATATGATAGGTACCTATATTGCCAT
AAAGGTTGGCATGATTGCATCTTATGAGAAGAAAAATGAAACAATTTACA
GAAAGTCGTTTGTGAAAACGGTTTTTGTATTTGACCAGTTCATAGCGAAC
AGATTCGAAATAAGCATTTGTATTTTCAAAGCGTATAGTAATGTATGATA
TTAGTTGAGAGAGTTTTTTACGTTTTGTTCTTTAATTTTCATATCACTTT
GTATAAATATTTTTAAAAATCAAAACGGCTAATATTTTTATTATTATTAC
AATTTTATTATATGAAGAAAGAGATAACACAACGTCATAGTTAAAGATAC
AAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015461-exon-sc0000211-1575043694:109047..109103 | TCONS_00015461-exon-sc0000211-1575043694:109047..109103 | Clytia hemisphaerica | exon |
| TCONS_00015461-exon-sc0000211-1575043694:107327..107536 | TCONS_00015461-exon-sc0000211-1575043694:107327..107536 | Clytia hemisphaerica | exon |
| TCONS_00015461-exon-sc0000211-1575043694:101998..103418 | TCONS_00015461-exon-sc0000211-1575043694:101998..103418 | Clytia hemisphaerica | exon |
| TCONS_00015461-exon-sc0000211-1510915933:109047..109103 | TCONS_00015461-exon-sc0000211-1510915933:109047..109103 | Clytia hemisphaerica | exon |
| TCONS_00015461-exon-sc0000211-1510915933:107327..107536 | TCONS_00015461-exon-sc0000211-1510915933:107327..107536 | Clytia hemisphaerica | exon |
| TCONS_00015461-exon-sc0000211-1510915933:101998..103418 | TCONS_00015461-exon-sc0000211-1510915933:101998..103418 | Clytia hemisphaerica | exon |
| TCONS_00015461-exon-sc0000211-1491911889:109047..109103 | TCONS_00015461-exon-sc0000211-1491911889:109047..109103 | Clytia hemisphaerica | exon |
| TCONS_00015461-exon-sc0000211-1491911889:107327..107536 | TCONS_00015461-exon-sc0000211-1491911889:107327..107536 | Clytia hemisphaerica | exon |
| TCONS_00015461-exon-sc0000211-1491911889:101998..103418 | TCONS_00015461-exon-sc0000211-1491911889:101998..103418 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000211 | supercontig | sc0000211:101998..109103 - |
Blast
BLAST of TCONS_00015461 vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2) HSP 1 Score: 211.46 bits (537), Expect = 3.757e-60 Identity = 131/371 (35.31%), Postives = 202/371 (54.45%), Query Frame = 1
Query: 148 CPWRCG-QSVTFETLNHHVYQCNKANAHDQCPFQVLGCTYDGS-IDVKEHMLIENASHASLL----------VPHVLKNMVSQDKTDSAMQHQAEDTADLRRRLENESTKNSILSNE--VCQLKRELAESNKKLNSLEKDMAVVRSTFDVLLRELNSVKNQAVSEERIKSVEETTDKLKLESANVTKSVVENHSLIMRLDERINNVNSNLGDVDLRQQILENTSVGGRFIWKIDRLRSRIKHSALGKVAALHSAPCFTKRFGYKFCTRLYLNGDGVGKDTHVSLFIVIMRSEYDALLEWPFRQKVTFNLFNYANPNDSLKESFIPDVSSPSFKRPHKEMNLAAGCPMFVTKERLE--TFILDDSIYIETTV 1212
CP +C Q++ L+ H+ +C NA C F+ GC + G+ +K H H +LL V + V ++K+ ++ +Q +E E K + +NE + L+R + +KL L+K++ R ++ E +S+K+ S + + E+ DK + V ++ S + R D+ ++ + L D+DLR Q+LE S G IWKI + R + + +GK +L+S P +T FGYK C R+YLNGDG+GK TH+SLF VIMR EYDALL WPF+QKVT L + + L ++F PD +S SFK+P EMN+A+GCP+FV + LE T+I DD+I+I+ V
Sbjct: 204 CPHKCSVQTLLRSELSAHLSEC--VNAPSTCSFKRYGCVFQGTNQQIKAHEASSAVQHVNLLKEWSNSLEKKVSLLQNESVEKNKSIQSLHNQI-----CSFEIEIERQKEMLRNNESKILHLQRVIDSQAEKLKELDKEIRPFRQNWE----EADSMKSSVESLQNRVTELESVDK---SAGQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIV 560
The following BLAST results are available for this feature:
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