TCONS_00015542 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015542
Unique NameTCONS_00015542
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length661

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015542 ID=TCONS_00015542|Name=TCONS_00015542|organism=Clytia hemisphaerica|type=transcript|length=661bp
CTTGTGATAGCGAGAGATCAAATGAGCGACAATACGCCAAAAACAATCTT
TGCCTCAGATTCAACGAAAGACGAAGAGAAATCACCAAAAAGTCCCTCGA
CTACAAACAAACCACGTTTCATATCCATTCATTTCGTCAACCGTGAGAAT
AAACATGTTTTGATCAAATTCCACGTTCCATCAGATCGAAGCATTCGAAT
TGCTCCTGTTCTCATCTATGCCAAGTCTACACGAAGGGCTTACATCCAAT
TCCCTAATGGTGTTGAGAATATGGTGGCCCAAGCTTTCCATTTGGACCAG
ATGCTAAGAGTGAATGGAAGACCTTCAATGACTTTGAGACCAAGATCTGT
TGACCAATTTGAATACGTTGTTATCGAAAGACCTGAACTAGTGCCAAAAG
AACAACAAGTTGATGTGGACGTCCGAAATAATTTGAACGAAGAAATTATC
GTTCACTGGATTGAAAATGGAGAGAAAAAATCCACCACAATTCCATCCAA
TGACAGAGGTGTTGCTCTGGTAACCAAAGGTGATCAACCAATTAGAATGC
AAGCTACAACTAAAGATGGTAGACCAGTTTACATCAATGGACAGAATTTC
TTCAGTTTGGATGATTTGCAACCTTCGGGAAAAAATCGTGTTTTTGTACA
AACTGGAAGAG
Run BLAST on NCBI

transcript from alignment at sc0000212:311962..313467-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015542 ID=TCONS_00015542|Name=TCONS_00015542|organism=Clytia hemisphaerica|type=transcript|length=1506bp|location=Sequence derived from alignment at sc0000212:311962..313467- (Clytia hemisphaerica)
CTTGTGATAGCGAGAGATCAAATGAGCGACAATACGCCAAAAACAATCTT
TGCCTCAGGTAATATTCCATCTTTTCAACACAAACCAACTTGGGTCTTGC
CGCCATTATCGAAGACAGTTGTCTCCTGGTCTCCTCAAATGTTCTCTACT
TTCTGTAAGTGATAAATAATATGGTCCTTTAAAGGTTAACACGTTCACTT
CCGAACTCTTAGAATTACTTCGCAAGTTTTACTTTCAGAGGTTCTGTGGC
ACCAGTGTTGCTTCAAATACAGTTTATAGTACTTTACAGTTTACAGAGTC
TATGTAACTCGAACCCGCACAGGGAACACAAATTTCACGTAGAATTTGGA
AATGCTAAGAAAAGCAAGCAAAACTTTCTGTTTCAAAATTTATGGCAATT
TGAAGTACAGTTTAAATACTGCCAGTATTTTGACCCCTCTACTACGAGTA
TATTATACGAGTATTCAGTATTGAGTGCGAAGAACTAGGAGAGTAAATGG
AGTTCATTTTCTTATAACGAAAATTTTTTCATCGCCACATTGTAGATTTC
ATTCTCCACTTTTTTAGATCCAGATTCAACGAAAGACGAAGAGAAATCAC
CAAAAAGTCCCTCGACTACAAACAAACCACGTTTCATATCCATTCATTTC
GTCAACCGTGAGAATAAACATGTTTTGATCAAATTCCACGTTCCATCAGA
TCGAAGCATTCGAATTGCTCCTGTTCTCATCTATGCCAAGTCTACACGAA
GGGCTTACATCCAATTCCCTAATGGTGTTGAGAATATGGTGGCCCAAGCT
TTCCATTTGGACCAGATGCTAAGAGTGAATGGAAGACCTTCAATGACTTT
GAGACCAAGATCTGTTGACCAATTTGAATACGTTGTTATCGAAAGACCTG
GTAAGCTGATTATATGAGTTACATTCGAATCTCTCTATAATTCGATTTTC
AAAAGACCAAAATTTCCTTCGAATTAGAGAAAGATTACAAGGAGTATACT
AATAATAGAGGTTCCAATTAGAGAGATTCGACTGCAAATATGCTATGACA
GTTTATGTCAGAGTTCAATCTTCAGTATAAAGGGTATGTGACTTCCTGTA
ACATGGTTTGATTTAACATTAACATTTTTGGCTTTAAATTCTCTTAAAAA
TATTCTTGAATTATGAATGCATAGGTGCAACAGTCATTGCTGCTTATTGA
ACGTTAACCATCGGAATGATTCATTTTCAGAACTAGTGCCAAAAGAACAA
CAAGTTGATGTGGACGTCCGAAATAATTTGAACGAAGAAATTATCGTTCA
CTGGATTGAAAATGGAGAGAAAAAATCCACCACAATTCCATCCAATGACA
GAGGTGTTGCTCTGGTAACCAAAGGTGATCAACCAATTAGAATGCAAGCT
ACAACTAAAGATGGTAGACCAGTTTACATCAATGGACAGAATTTCTTCAG
TTTGGATGATTTGCAACCTTCGGGAAAAAATCGTGTTTTTGTACAAACTG
GAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008670XLOC_008670Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015542-exon-sc0000212-1575043694:313410..313467TCONS_00015542-exon-sc0000212-1575043694:313410..313467Clytia hemisphaericaexon
TCONS_00015542-exon-sc0000212-1575043694:312568..312894TCONS_00015542-exon-sc0000212-1575043694:312568..312894Clytia hemisphaericaexon
TCONS_00015542-exon-sc0000212-1575043694:311962..312237TCONS_00015542-exon-sc0000212-1575043694:311962..312237Clytia hemisphaericaexon
TCONS_00015542-exon-sc0000212-1510915933:313410..313467TCONS_00015542-exon-sc0000212-1510915933:313410..313467Clytia hemisphaericaexon
TCONS_00015542-exon-sc0000212-1510915933:312568..312894TCONS_00015542-exon-sc0000212-1510915933:312568..312894Clytia hemisphaericaexon
TCONS_00015542-exon-sc0000212-1510915933:311962..312237TCONS_00015542-exon-sc0000212-1510915933:311962..312237Clytia hemisphaericaexon
TCONS_00015542-exon-sc0000212-1491911889:313410..313467TCONS_00015542-exon-sc0000212-1491911889:313410..313467Clytia hemisphaericaexon
TCONS_00015542-exon-sc0000212-1491911889:312568..312894TCONS_00015542-exon-sc0000212-1491911889:312568..312894Clytia hemisphaericaexon
TCONS_00015542-exon-sc0000212-1491911889:311962..312237TCONS_00015542-exon-sc0000212-1491911889:311962..312237Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000212supercontigsc0000212:311962..313467 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.19401	0.957292	0.668805	0.24925	1.62436	1.22462	3.41342	5.92867	2.31846	2.94458	2.70897	2.93214	2.86192	1.46691	2.49887	7.56411	2.26618	2.43181	2.33907	3.40995	2.08327	0.0539213	1.4899	3.75545	2.216	0.0717297	10.4595	6.88626	10.1485	12.9005
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015542 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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