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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015551 ID=TCONS_00015551|Name=TCONS_00015551|organism=Clytia hemisphaerica|type=transcript|length=1856bp
CCaaatacagtgtgtcccgaagaaagtggaaaattttcttataaattaaA
ATCCTTATAATTTATGCGAAATTTCATGACTTGTATGAATATGTAATATT
TCAATCTCCAAAACCGGATTGAATAGGTTTTGGAATCTTGGGAATTTTAA
TATNCTTGTATGAATACGTAATATTTCAATCTccaaaacctattcaatca
tcttgggaattTTAATACATATTAATTGAACAGAGAGACCAAAgatctta
tttcaattattatAACAATTTGTCCACTTTCTTTTGGGACAAACAATAGC
CTAGGGAATAGATATCAATCTCTTACCAATTTTTTTCCTTATGCCAACGT
GAGAATGTATCCGAGATGAATGAAATGGTGAAATGGTCAATGCAAACCTT
CAAAGTGTAACAAGTGTAACAAGTGTAACAGATTGATTTTCAAATAACAT
ATTGTTGATAGTTCTTACTTTCGGTCAATAAGATCAACTTTTTGCTTGGT
TTTACATAATTAGTATCAATTTTCATCCAAGAGAATGAGGTCTTCTTAAA
GAAGAGCGTTAGATTCAACCCATGATCAGCAAGCATTTTCTGGAAACCTT
GATCAACTTTTGCCACCGCGTGCATACTAGAGACGTTTGCTGAGCGGAAC
TCGATTTCAGCTTTTCGTACAAATTTAGCAAtgaattttttatgtttcaa
caAAGATGTTTTAAATTGAATGAATCCAGGTAGAAGACAGAAGTAGAAAT
CGATTTTTTGGTGGAATTGCTGTACTGGTTCAACTGGTTGGAATCCATTG
TATTTGACGATTCGCATTCGAATGTAAGCTGACCTTTCATCAATATCCTT
GATGGCGATGACCGGATCCAACACAACTCCATTCCATAAGAAACGATTCT
CAGTTGCGCTGACGAGTTGTTTATCTTTCGCGATGTATGTATAATGTTTA
CAAGCATATAACGAGTTATTCATAGGTCGTACAAATCCCCTTGAAGGAGA
TATGGATGGCGATTTAAGACCACGCAGCTCCCTGCTACCGTGCGATAAAG
TGTGATATTTCAAGGTATTAGCAAACCATTGTGAATACCCAGGCCATTTG
TTCAATATGCGGTCACATATTGTAAGTTCGTCTGTTAGGAAGGTGACTGA
GAGCGATCCAGATCGAATCGACTTAAGGAAGCTTTCAATAATTTGAGGCG
TCTGGTAATCAGGATTCCCTTCCAACCATTGGTAAGCAAAGACCAGTAAA
TGATTCTCGTGTAAAACAAAAGCGTGTTTGGAGCGTAAGAGCGATAGCAC
CGTTCGGTGATCTAGATTCTTGAATTTCTCTTGTTGAGCAAACTTGAATT
CCAAAGGGAAAAGAGCTTCACATAGAAACTTAATACAAGAATCCCAGGTT
TTCTTGTACTTCTCGTTACTATCATAAGATTGAAACACTCTGGAGACACA
TTGTAAGATGGTATTGCACTCCTCTAGTGTCTTGACCGTTTTCTTATCCA
ATAACTCAAGTCCGAAATCAACAAAACTTGAACACGAAAATCTAGCTGCA
ATATCCATCACAGACAATAAAGCTGGCAACGAAATATCCACTAGCGTATC
TTGGTCATAGAAAGCCTTAACTAGCATTTCCAGATACTTCCCTTCACCTT
GGTTGACCTTGATATCGATGGATGACATGCTATTTTCTTTCATTCCAGAA
TCAACAAATAGTTTCTGGAAATACAAGCTGTTTAAACAGAGGACAAGCGA
GTGAACTGGCAAATCAACATACATTTTTCCCTTGGGGAGGGGATGGAGTT
GAGATTCTACATTATTCCCAGATGTATTCTGCTTTACAGGGCTTTTTAAA
GAACAA Run BLAST on NCBI transcript from alignment at sc0000212:436657..438567- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015551 ID=TCONS_00015551|Name=TCONS_00015551|organism=Clytia hemisphaerica|type=transcript|length=1911bp|location=Sequence derived from alignment at sc0000212:436657..438567- (Clytia hemisphaerica)
CCAAATACAGTGTGTCCCGAAGAAAGTGGAAAATTTTCTTATAAATTAAA
ATCCTTATAATTTATGCGAAATTTCATGACTTGTATGAATATGTAATATT
TCAATCTCCAAAACCGGATTGAATAGGTTTTGGAATCTTGGGAATTTTAA
TATNCTTGTATGAATACGTAATATTTCAATCTCCAAAACCTATTCAATCA
TCTTGGGAATTTTAATACATATTAATTGAACAGAGAGACCAAAGATCTTA
TTTCAATTATTATAACAATTTGTCCACTTTCTTTTGGGACAAACAATAGC
CTAGGGAATAGATATCAATCTCTTACCAATTTTTTTCCTTATGCCAACGT
GAGAATGTATCCGAGATGAATGAAATGGTGAAATGGTCAATGCAAACCTT
CAAAGTGTAACAAGTGTAACAAGTGTAACAGATTGATTTTCAAATAACAT
ATTGTTGATAGTTCTTACTTTCGGTCAATAAGATCAACTTTTTGCTTGGT
TTTACATAATTAGTATCAATTTTCATCCAAGAGAATGAGGTCTTCTTAAA
GAAAAGCGTTAGATTCAACCCATGATCAGCNCCAAGAGAATGAGGTCTTC
TTAAAGAAGAGCGTTAGATTCAACCCATGATCAGCAAGCATTTTCTGGAA
ACCTTGATCAACTTTTGCCACCGCGTGCATACTAGAGACGTTTGCTGAGC
GGAACTCGATTTCAGCTTTTCGTACAAATTTAGCAATGAATTTTTTATGT
TTCAACAAAGATGTTTTAAATTGAATGAATCCAGGTAGAAGACAGAAGTA
GAAATCGATTTTTTGGTGGAATTGCTGTACTGGTTCAACTGGTTGGAATC
CATTGTATTTGACGATTCGCATTCGAATGTAAGCTGACCTTTCATCAATA
TCCTTGATGGCGATGACCGGATCCAACACAACTCCATTCCATAAGAAACG
ATTCTCAGTTGCGCTGACGAGTTGTTTATCTTTCGCGATGTATGTATAAT
GTTTACAAGCATATAACGAGTTATTCATAGGTCGTACAAATCCCCTTGAA
GGAGATATGGATGGCGATTTAAGACCACGCAGCTCCCTGCTACCGTGCGA
TAAAGTGTGATATTTCAAGGTATTAGCAAACCATTGTGAATACCCAGGCC
ATTTGTTCAATATGCGGTCACATATTGTAAGTTCGTCTGTTAGGAAGGTG
ACTGAGAGCGATCCAGATCGAATCGACTTAAGGAAGCTTTCAATAATTTG
AGGCGTCTGGTAATCAGGATTCCCTTCCAACCATTGGTAAGCAAAGACCA
GTAAATGATTCTCGTGTAAAACAAAAGCGTGTTTGGAGCGTAAGAGCGAT
AGCACCGTTCGGTGATCTAGATTCTTGAATTTCTCTTGTTGAGCAAACTT
GAATTCCAAAGGGAAAAGAGCTTCACATAGAAACTTAATACAAGAATCCC
AGGTTTTCTTGTACTTCTCGTTACTATCATAAGATTGAAACACTCTGGAG
ACACATTGTAAGATGGTATTGCACTCCTCTAGTGTCTTGACCGTTTTCTT
ATCCAATAACTCAAGTCCGAAATCAACAAAACTTGAACACGAAAATCTAG
CTGCAATATCCATCACAGACAATAAAGCTGGCAACGAAATATCCACTAGC
GTATCTTGGTCATAGAAAGCCTTAACTAGCATTTCCAGATACTTCCCTTC
ACCTTGGTTGACCTTGATATCGATGGATGACATGCTATTTTCTTTCATTC
CAGAATCAACAAATAGTTTCTGGAAATACAAGCTGTTTAAACAGAGGACA
AGCGAGTGAACTGGCAAATCAACATACATTTTTCCCTTGGGGAGGGGATG
GAGTTGAGATTCTACATTATTCCCAGATGTATTCTGCTTTACAGGGCTTT
TTAAAGAACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015551-exon-sc0000212-1575043694:438029..438567 | TCONS_00015551-exon-sc0000212-1575043694:438029..438567 | Clytia hemisphaerica | exon |
| TCONS_00015551-exon-sc0000212-1575043694:436657..437973 | TCONS_00015551-exon-sc0000212-1575043694:436657..437973 | Clytia hemisphaerica | exon |
| TCONS_00015551-exon-sc0000212-1510915933:438029..438567 | TCONS_00015551-exon-sc0000212-1510915933:438029..438567 | Clytia hemisphaerica | exon |
| TCONS_00015551-exon-sc0000212-1510915933:436657..437973 | TCONS_00015551-exon-sc0000212-1510915933:436657..437973 | Clytia hemisphaerica | exon |
| TCONS_00015551-exon-sc0000212-1491911889:438029..438567 | TCONS_00015551-exon-sc0000212-1491911889:438029..438567 | Clytia hemisphaerica | exon |
| TCONS_00015551-exon-sc0000212-1491911889:436657..437973 | TCONS_00015551-exon-sc0000212-1491911889:436657..437973 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000212 | supercontig | sc0000212:436657..438567 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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