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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015620 ID=TCONS_00015620|Name=TCONS_00015620|organism=Clytia hemisphaerica|type=transcript|length=835bp
tgctgatttaccgtcgtcctcagctggtcaggatctactcaaattagaac
cttaccgtctccgtcgctgaaaaacacacatacataaactcgctattggt
TTGAGCCTCCACCGGCGGCGAGTAAAACATAACTCGCTATTTGGTTTAGC
GGGTGATACAACTCGCCTTTGCGCAACGCGCGGGCTGTCCACAGTTGTTA
GAAATACTTACGGCAGCCGAAACacgccatctttaattttctcAATCTCC
AAAATCTCAACAAACTCTGCCACTGACTTTGCCAAGCAGTTCCAGCATTT
CCATTGTGCATTTCTAGTAAATACCCAAGTCACTATATCAAAGAAAATGT
CTGGACAATCAGCTGTAGAACAACTCGGTTTGAGAACCGCCCCTTTTGAT
GCTCGCTTCCCCAACCAAAACCAAACGAAAAATTGTTGGCAAAATTTCAT
GGATTATCAACGCTGTATCAAAAATAAAGGAGAAGAATATGAACCAtgta
actttttcaaaaaaaattacaaatccaTCTGTCCAGTCGCTTGGGTTGAG
AAATGGAATGACCAAATAGAGGAAGGAACGTTTGCCGGAAAAGTCTAATA
ATTGTACTTATTTTGAAATCctacatttttttaattatcagTTAGTAAAT
ACgttgaaaaaaatacttgcaatgtAATAtacttatttttgaaaaataca
atcaCGTGACCTACTGTATGCTCCTCTCCGTAAGGTTTATCTGTGTTCTA
GAATTTATCAATTACCCGAGCAATGGAGACTCATTTTGACTTGTTTCTTT
TCACGTCTTCGTCTGGGAAAGTTATGTGAAGTTTG Run BLAST on NCBI transcript from alignment at sc0000214:358395..367618+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015620 ID=TCONS_00015620|Name=TCONS_00015620|organism=Clytia hemisphaerica|type=transcript|length=9224bp|location=Sequence derived from alignment at sc0000214:358395..367618+ (Clytia hemisphaerica)
tgctgatttaccgtcgtcctcagctggtcaggatctactcaaattagaac
cttaccgtctccgtcgctgaaaaacacacatacataaactcgctattggt
TTGAGCCTCCACCGGCGGCGAGTAAAACATAACTCGCTATTTGGTTTAGC
GGGTGATACAACTCGCCTTTGCGCAACGCGCGGGCTGTCCACAGTTGTTA
GAAATACTTACGGCAGCCGAAACacgccatctttaattttctcAATCTCC
AAAATCTCAACAAACTCTGCCACTGACTTTGCCAAGCAGTTCCAGCATTT
CCATTGTGCATTTCTAGTAAATACCCAAGTCACTATATCAAAGGTAAGAA
TTTGTGCTTTTCATTCAGTTTGGTTCATTGACATACAATGTTTGGCTTTG
TCAATCTAGATTTTTAATATCCTTGCGATGTCCAATCCAACTGCTCAATA
ACTGTTCAGTTAGTTCTATTAGTTCAAACTAATTGAATTCTTTTcctttg
ataaaaataattttataagaacagtgaGGCAATATACACCTTTTTCCTTT
TCCAAGCTTCTCAGCCAGACGTCTGTGCTCGATATAGGATCGATAATCGG
AACGACTctatcgatatgtgatcgatagattacttaacgatccggatagg
atagaggatcgatactcaagattttttaaagcttatgattagttatcgat
tatttgtCGAtctcatcgatcttttatcgcaatcttatcgaccctatcga
ctcatactcgatttacgatcgataacaaatcgattaacgatcgataacaa
atcgattaacaatcgatgacgaatcgattaacaatcgatgacgaaNNNNN
NNNNNNNNNNNNNCTAGCttgataatggatcaacgaaggatcgatactca
agactttttaatggctgaatcttccatcgatctcctatccggatcgttaa
gtaatccatcgatccgCCATCGAGCcattccgatgatcgatcctatcgag
cgcggacagaggcggatctgggatttttctgagggggttcaaaaatctct
tttcaaaaaaatattttcggaaCAAACGTTTTGGGCGTAATTTTTGCACC
AGCCCTGTTTGGGCGGTGTCACCTTTTTCCCATTCAACATGGGGGGCGTT
AATGAGCGCCTGCACATCTGCAGTTCCCATTACCTATGAACTCCAAACAT
AGGCCTCAGcgggggaccattcaaaaagtacgtacgctcgaaaatggcaa
atttttgactccctctcccccttgtacgctttatgtgtacccccccttta
gcgtacgtacgctttttagtacaccccctaaccaaagtcgaaacttgtaa
ctcttgtaacagtagaatatgtaggtatccaatcgtatttataacaaagN
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NNNNNNNNNNNNNNNNNNNNNNgtaaaataatatcgagatatgaccaaaa
agaaaaatcagttccgatcagaaaactagatttcacttgaagaaagggtc
tttgttttttttatttactaaaaggCAGGGTTGGgctggttcagctgaac
catttgaaccccctcagatccgccgctgGCGGACGTCTGGTCTCAGGCAG
GCAGAAAATGGAAAGATCTAgtttcaatcaccaattccgcccttctcttt
ttctctatttcctatctctaactctgatttttctgatttctggacttagt
tttttctgaatttgactATTTGAAGCTATTTTGCTAATTCTGAAACTATA
CTCCACACCTcgattcgaaccaccaaatgcaagcaaccttgatatagacc
ttttcgcctttccatccgccatattgaattatatgcaaaaattatggtgg
ccgaattgtcgtggtgaaattcccttagaaagTATGCAAAACATATGCAA
Aaagaaagtattaaataaaaacttacatgcataattggcattatattaaa
gtgtaatcttgtagaagaaagattaaatttgcttctcttgaaaactaaaa
acaattttattcactcatctctaagaacaagcacttcaaaagatcataac
attagacagaaactcaaactgaaaaatcacccgcaaaggtaaaaaataat
ccttattcaaaggtaaaaaataatccttattcggctgacggcaaattatt
ctcctgggaatagacccgccaaatgatcaaatcaaaacattgataaagtg
tgactgctttcagtttgtgtgttttgaaagtttgatgtgtgtactccgtc
ttcgtggaattttttaatggcatgaaaacagaatatgcaatgtctttaag
aaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNtttggattaagaaattccatcttttattgttctaatgatta
tgatatttatttataagatgctttgttgtctttttaatctttgtgtaaac
ttgcatatgttttgtgCATACATttcaactaaatccaaccacggcatttt
cgttcctgtatttttgcatacaattcaagatagcggacggaaaggcgaaa
aggtctattggtttCCAAACCCGACCACTTGCGCTAACGAGACACAGCAG
TAAACAAAATGCCTGTAAATTACAGACCCTATATATTATAGCTCCCAAcc
ccctaccggtgcccctaaaAGGGCTGCTATGCAGCCCTATGTTTAGTCAC
AGCACAGGGTACGAAAAGTGCCCCTAAGAGGCATTTCTAAGAATTGCTtt
caaggttcaggtcccagaaAAAAAAGCTACTGTCATTTCTGGTAGTATTA
TTACTAGTTTTCTTTACGTATCAACATGGGACGTCAACCAACTGAGGAAG
AGAAGAAAGAATTCatgtacatcataaaaatgcggggttaaaaaaaattg
ggggtccaaattgaaaatttttaataaatgtTGCCCACCATGGTGGTGAA
ATTCCACTTAGCAGCTTTTAACTCCCCTGACACCctttaaattttgtaaa
attgactcaaaagtacaatttttgctgaaatttttgcCCCAAATTAGTAC
ATGTTGATACTTGATTCTGGATTTTGTCGAGGCTGGTCAAGAAGAACGCA
TATCAATCATATTGAATAACAAATCACTCCAGCTTACTTTCCCTCAGCGA
GTACCTACCTTGTCCCTAGGTAAAAAAGACAAATCATTTATAATCATTTA
TGATATGTTGTTATATGAGGTTAtcattgaaaacatttattATGCTGGAG
TAATAACTTATTCACTTCTCCCAAACAACTAACCTGTAATTGTTGAACAA
tccatcatttgaaaattccaggcgtgtggtcaatcacactcctaaaacct
taattttagtaatttagaCGTGTGATTAGGAGTGCTATGCTCAACTTTGA
GTTGTAAAACTAATTTTATGGCTTGCAATAAATCAAACTCCTAAGAAATT
TcaggtgtgtgtggaggtgtgcgcgtACTATCGCACGCCTCAAATGATAC
AGCCTGACAATCATCAATAGATTTAATTGATCATCTATCAATTCAATCAA
TTCAATCAATGAATGaataatctatcaatcaatagatattcaagTCTCTC
AATGATATTTTGATTATCTATTACCAGATCAGTTATATATTGAAACCAAT
CAATATTCCTTCCTGGATGGATTGGATATTGAGTTTCAGTCTGGATATGG
ATATGATTTCTTTGctaattcttttttaaaggtGTACTTATTTTTCTAAC
TAAAGTTAtaccactttgaaattttgaacttttgcttgaaaacaatagaa
aaaagtgtgaaaagtccctgaaaagtcccatttttcgagatttcaaattg
gcataacttgagttaagaaaataaatacaccgaaaaatttagaggttttt
cctaaaatcctagaagctatatctataggcaaaatatctcaaaccatctg
attatccctttaaaaaagaattagcaaagaaatcatatcatatttttatt
taagtttcttgttctaactttaaagagaaagaaGTATAATTGTACAATCT
AATCATGAAAATCAAGGGAGTAAACTAGACCCAATTGAGAGtctttcctg
aaaatttcaggtaGCACCAAAAGATATGCTCCTTTGAACTTAGCtgaatt
ttgtgaattttctgTAAAATCACAACTTtgtccgccattatgaatttcaa
TATGGTAGAAGATaacctaaaaaccgattttctgtaAAGTATTCCACCCA
AAGTTTCATTTTAATTTGGTTTTGAGGTTTTTACACCACTCACCGTGCAG
AATGAAGACATTTTTCTGGCCTTGAACtcaaattttcggtttttggaGCA
CTCTGCTGGGGGTCctaaaactttttttggaaatcttctggacagaaatt
tttatttctaataaggcaaatactttttatttattggtttacggatccgc
caacgttatttttgccaaaataaaaaaaaataagagaaaGAAAGAGGGGG
TTAAACGATCTAACACAGCTGTGCCCTATTCTGCCAATGTAAAGATACTT
TGATCCTTCCCTTAATTTCAGGGAACTTCCCCATGGAATTTCCCTATTCA
CAAAAACAACTTCAAGAGTAATTTTGTGCAGAAGAAGATTGTTGAAGAGA
GACTTATAAAAAAATCGATACTTTTTTCGAAACTTCATAAAATCTTATTG
TATTATTTTCCTACTATTTCtgattttaaaaaagaaaagaaaaaaattta
aaacatcaattttattttaattttttttccatcctcctgtccaaaacttt
tcctcataatgtccgtaaaccagaaaataaaaaagtaattgcctaatata
cataaaaaagttgaaaaaacctgaaaaaaatcAGCCCCTAAAACTAACTA
AATATTATCacaaattttccaaaacttgGGGGCGGAAATTGCTCaaatca
aaattctcaaaaccccATATCTTCAAAACTGCTTGAGATATAgagctgaa
attttcagggcaaaagttttcaccaaaattcaaaatttccaagacgagag
aagaaaatgtatgaatttcctaGGCAATTGGattaaaaaaaggggaaaaa
aagtggaatttccgatgcattttgtgaaagtacatggattttcatcagaa
tttccaaccaccactggaaaagaaaaaattatttctgaggctaaaaaaat
taaaaaatgcatgTCGTAACAAAAGTTTTCTGGGATGGCCCATTAAAGGG
ATCATTtgagcaaaatttcagcaaaatctgaGACATTGATaaatcacacc
ctgaagactattagaaaaaatggctcttaaaataGCTGCTAACcaataaa
aaaacaccaatcactcctgattttgagtatgatcaaaaataaaagaaagg
agTGGTGGTAATAAAAAATCCGCCATCACAACTGAGTGATAGGGGTGATC
CACCACGACAACCAAcactgatgatgatgatgatgtggCGACCATTTATC
TGTCTCGGGATGATGAACTAACCACCAACATCCTTAAATTTGGTTGTCAA
GCTTTCAAATTTAGAATTGTATGTGATCGTGGAGGGATGGGCGCATGCAT
GCTTTATAAGAAGTTATTAACAAGtttattttggttttgttttaGAAAAT
GTCTGGACAATCAGCTGTAGAACAACTCGGTTTGAGAACCGCCCCTTTTG
ATGCTCGCTTCCCCAACCAAAACCAAACGAAAAATTGTTGGCAAAATTTC
ATGGATTATCAACGCTGTATCAAAAATAAAGGAGAAGAATATGAACCAtg
taactttttcaaaaaaaattacaaatccaTCTGTCCAGTCGCTTGGGTAA
GAGCTAATTTACACTGATCAATAGCTGTACCATCAAGATTCCTATTCACA
GAAGTGTGTTCGGTTTTAGAGCTGACAAGTCCATCAAGTTGTTATCTATT
TTAAGATTTAAATGTTTGAAATGAAAACTTTCGCCAATGAAATCTAATAG
TCAAGAACAAAATAACAactctaaaatttgaaattgttaCATATCAAGCA
GATGTTCATTTTGTCTGAAAAACTGCTTTTGACTACAGTTTAACTATGAT
GATTTTATCTTGCGAATGGGTTCTcctggaaatattttttatagccCAGT
ACTGTATTATTACCCTGACATTTCAATCTCCAAGTTGCTTTCCAATGTTT
TCTACCCAAAATGTTCAATCTTAACCCCTGCCCTGCTTTTATTcgttttt
agaatcttttcaCCCACCCTACATGTTCCAATCTGCCGTCAATTTGCTAT
CCAAGAGTAATATTTTCTACATTCGTTTTTCAGGTTGAGAAATGGAATGA
CCAAATAGAGGAAGGAACGTTTGCCGGAAAAGTCTAATAATTGTACTTAT
TTTGAAATCctacatttttttaattatcagTTAGTAAATACgttgaaaaa
aatacttgcaatgtAATAtacttatttttgaaaaatacaatcaCGTGACC
TACTGTATGCTCCTCTCCGTAAGGTTTATCTGTGTTCTAGAATTTATCAA
TTACCCGAGCAATGGAGACTCATTTTGACTTGTTTCTTTTCACGTCTTCG
TCTGGGAAAGTTATGTGAAGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015620-exon-sc0000214-1491911889:358395..358737 | TCONS_00015620-exon-sc0000214-1491911889:358395..358737 | Clytia hemisphaerica | exon |
| TCONS_00015620-exon-sc0000214-1510915933:358395..358737 | TCONS_00015620-exon-sc0000214-1510915933:358395..358737 | Clytia hemisphaerica | exon |
| TCONS_00015620-exon-sc0000214-1575043694:358395..358737 | TCONS_00015620-exon-sc0000214-1575043694:358395..358737 | Clytia hemisphaerica | exon |
| TCONS_00015620-exon-sc0000214-1491911889:366640..366840 | TCONS_00015620-exon-sc0000214-1491911889:366640..366840 | Clytia hemisphaerica | exon |
| TCONS_00015620-exon-sc0000214-1510915933:366640..366840 | TCONS_00015620-exon-sc0000214-1510915933:366640..366840 | Clytia hemisphaerica | exon |
| TCONS_00015620-exon-sc0000214-1575043694:366640..366840 | TCONS_00015620-exon-sc0000214-1575043694:366640..366840 | Clytia hemisphaerica | exon |
| TCONS_00015620-exon-sc0000214-1491911889:367328..367618 | TCONS_00015620-exon-sc0000214-1491911889:367328..367618 | Clytia hemisphaerica | exon |
| TCONS_00015620-exon-sc0000214-1510915933:367328..367618 | TCONS_00015620-exon-sc0000214-1510915933:367328..367618 | Clytia hemisphaerica | exon |
| TCONS_00015620-exon-sc0000214-1575043694:367328..367618 | TCONS_00015620-exon-sc0000214-1575043694:367328..367618 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000214 | supercontig | sc0000214:358395..367618 + |
Blast
BLAST of TCONS_00015620 vs. Swiss-Prot (Human)
Match: CX6B2 (Cytochrome c oxidase subunit 6B2 OS=Homo sapiens GN=COX6B2 PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.548e-25 Identity = 39/73 (53.42%), Postives = 56/73 (76.71%), Query Frame = 2
Query: 386 TAPFDARFPNQNQTKNCWQNFMDYQRCIK---NKGEEYEPCNFFKKNYKSICPVAWVEKWNDQIEEGTFAGKV 595
T PFD RFP+QNQ +NC+QNF+DY RC+K +G+ +PC ++ + Y S+CP++WVE WN+QI+ G FAGK+
Sbjct: 16 TPPFDPRFPSQNQIRNCYQNFLDYHRCLKTRTRRGKSTQPCEYYFRVYHSLCPISWVESWNEQIKNGIFAGKI 88
The following BLAST results are available for this feature:
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