|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015630 ID=TCONS_00015630|Name=TCONS_00015630|organism=Clytia hemisphaerica|type=transcript|length=1717bp gcaacattttttctttttagcaaaATAGTAGAAACAAAATCATataaaga acactttaagaacaACTTTAGaataagaaggaaaaaaaatggaTAGCATG TTGTTGAGTATGGAATCACAAATAATGGAGGGAACAGATTGTCAATGTAA TTGTCAAGCAACAAAAGACTTGAAAAAGGTCTTAGACGTCAATCAACACT GGCAAAGCGATTACAACCAATTGATGGATGCGAACCagcttttaaaaaca aaatattggaatttgaaacagaaatatgaagacatgaaaaaagaaaatgt tgaaTTGATGGGCAGATGTGCAGAGTTGTGTCGAAAGAAAATTGATCAAC AATTCCCTCAAGTTGAGAATGAACCGGTGGAGAAAAAAGTCGAAACGTCG AAATTTACGGCAGACGATTTGGAGGCTTTGAAACAACAGTTGGCGATCTA TAAACAAGACTTCATGGAGGAAAAGAAAGAACATCAGAACACGTCTCGTC AAAACAACAAACTGAAAATGGAGCTCCGACAACTGAGACAAACGGTGGAT GGGtatttcaaagacaatcaatcCATGAAGgagaaatatcaaaaattata tGCAGAGAAAAATCACATTGTGAATGAACTTCAACGGTTGTCAAATCCGT ATCATCAAGCAATGCATTATGGGAATCAATATGGTAGACGACCGATCATT GAAAGTTATACCTTGAAACCACTTCCGTGTTGTGGAGCTGAGCTCACCCG AGATTGCGGATCATCTGAAAAGCGGAAGGAGCACACACAAGACGGAACTG TACCTGAAATAAACAACGGAAAACTCAAATGTTGACGTAGTGAATAAGTA GAAAGAAGGTATGTTGGGAGAAACGACATCTTGATcactttcaaaagttt tattgaagGACGGATCAATAAACAGATTCTCATAACCTTGCACCTCAACG TTCAATTCAATCGAAGATTGCGCAGGCGCATGGTCGTCAAAATGTTGAAT GAGCGAAAGTTTTGGCAATCAGACTGTGTTTTGGGCAGGAGTGACCTAAA GCGCTTCATGCTAAAGAAGGGAGCTTCAGACCGGATTTGAGGAATCAGAG AGATGAAGAAAGAAATTTAGAATTCATTCGTTGGAATGGAATTGGTATTG CACTCGATTTCCATCTCGTCTATGAGTAGGTTTGCATGTACGTATGATAC AAATACACACGCAAGAGAAAGAATCAGCTGCAAAGACTCAAAAATGTGTC GAAAATCACCACATATAGCAATGtgaaagcttcaaaaaactTCCAAACCG GTTAATATATGGAAGGTTATTTATTACCTGAATTAAAGTTTTATTGAAGA TATATTTTGTACAAAATTTAGTCATTTAACTGTAGATAATATCTAGGTAT CATATATCTATTAGTGGAAAAATGTAAtgttaatatttatttattgaaaG CTTGGgtagaaaatattttggtgaGCTTTCATCAGTGTGTATGTAAATAA CGATGAAGATGCAATATATGTTGCGTATAAAAGATTTTTAACGAGAAGCA AACGACAAATCGATAAAATATACTTTCAATACTCATTTCCAATTCAAGAG GACAGTTGAATTCTTGTAATTTGGTCAACAGTTCATAGTCCAGGACAGGG ATATCTAGAAAAACTCGTTGTCAATGGGGTGATATTTGCGATGTCACAGG GGTGTAGTTCATTAAAA Run BLAST on NCBI protein sequence of TCONS_00015630-protein >TCONS_00015630-protein ID=TCONS_00015630-protein|Name=TCONS_00015630-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
MDSMLLSMESQIMEGTDCQCNCQATKDLKKVLDVNQHWQSDYNQLMDANQ LLKTKYWNLKQKYEDMKKENVELMGRCAELCRKKIDQQFPQVENEPVEKK VETSKFTADDLEALKQQLAIYKQDFMEEKKEHQNTSRQNNKLKMELRQLR QTVDGYFKDNQSMKEKYQKLYAEKNHIVNELQRLSNPYHQAMHYGNQYGR RPIIESYTLKPLPCCGAELTRDCGSSEKRKEHTQDGTVPEINNGKLKC Run BLAST on NCBI transcript from alignment at sc0000214:375724..380200- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015630 ID=TCONS_00015630|Name=TCONS_00015630|organism=Clytia hemisphaerica|type=transcript|length=4477bp|location=Sequence derived from alignment at sc0000214:375724..380200- (Clytia hemisphaerica) GCAACATTTTTTCTTTTTAGCAAAATAGTAGAAACAAAATCATATAAAGA
ACACTTTAAGAACAACTTTAGAATAAGAAGGAAAAAAAATGGATAGCATG
TTGTTGAGTATGGAATCACAAATAATGGAGGGAACAGATTGTCAATGTAA
TTGTCAAGCAACAAAAGACTTGAAAAAGGTAAAAAGAGAAATATTCAATA
TGCCTGATTTTTAAGAAACTTTTATCAAAGAGGTACAGGTTTTGAAGGGT
TTATTTCTTCCGGGACTTCCTCTTTTAGATTTTTTAAAGCTTTTTAACTG
TAGAACACTTTCTTTGGAGGACAACTCAAAAGATACATGATGAGTAGACA
TTTCATTCGTCATGCTTGTTTAACCCCTTTAGAAAGGTTATAGTGATGGA
GACTTTCATTAAAGATTAGTTCGAAAGATGGGTTCAAAAGTTCTCCCATA
ATCATCGTGGTTTAATTGACCGCAGTAATTATACAAGAAAGTCCAATTAA
CTATTACGTCAGATAATGATCTGGGAAGTCACAGATAGTAGGAAGGGAAA
CCCCATCGAGGAAACCCCTTTATACAAGGAAAAACCACTCTTTGACGAGG
CAAGGAAATCCACATTAGGAAAACGAAAGATTCTATATATTAATAGCGGT
GCTTTGTGTGTCTGTGTGTCACCACTTTCGTTTTCGCTTTGTTTGTGTTT
TAAAATTATGACTTTTCGTCTCTTGCTCCACAAATTTGTTCCATTGGATT
CGCGCCATTTGCAAAAGATCGGATAGAGCTTGGTTTAGACTTTATTCAGC
CTTTGTTTTGAAATTTAAGGCCCATCTACATTTTAGTAATTTTAATTTCT
GCCCAGAGTTCTGCAGAGTTGTCTTTTTCTCTCTTCTTTTGTTTTAAATG
TTTTCGAATGTATTTAACGATCGTATTTATAAATGACATTCGAATTCTTT
TCAAAACAAAACAAATTAATTTCATAGAAAAGAATATTTCAAAAGTAAAT
CAAAACATAAAAATCAAAAAGTTTTTGGACAACAACAGCATTCAAAGGAC
GATATCAAGCATAAGAAAAAATTAGTTTACTTCTTTCTTCTTATAAAAAT
ATTCAAGTCGTCGTTACTGTTAAAACCCCGTTAAAACGTGTGTTTGTTAT
TCTACATGTTTAAATTCGAAAAGTTATGAAAGGGTTTAAAAAAGCATAAC
TTTAAATTGTCTTATTTTTTTTCGATCTGATAAAAAACAAAGAGTTGCAC
TATTCTTTGTTACCTTCCCACTTTTTCCTGAAAAATTGTTATTTAAAGTG
GACGGCATATTTAACGCGAGCGAAGCGAAAAAAAATAACTACCTGCAGAG
TCGTTTCAAACGACACTGGTACAGTAAACGATGCTCTTTCTGATAACTTT
TGACTTAAACAAACAAAAAATTATGTCACGGGGGGACAGTACACGATCCA
AATATGGTTAAAAGATAAGACACCAGGGTTAGAGTTAAACGTTGTAGAGA
TTTCTTCTTCTTTTTTGATCGCTTTTTTAAGCCAGCTTCAACATCCAAAG
GACTTTTAGTGCGTTCAGCTACAGCTTAACCGGCGTGCGACGCCGGGTAC
CGGCTAGTATTTCTATAAACAGAAACAGGTTTCCATGGAAATTAAACTAT
TAATATTCATATGGAAACTCGTTAAGTTTTTCTAACATCACCTTCTTACT
CAATCTTCGAAAGTTAGAAACTTCTTCAATAGAAAATGTTGGAAATAAAA
ACTTAAGGTTGTCATCCCCGAGACTCGTAAATGTCACCTCCGAGTGCGGT
GGCAAACTTCCTTACAAAAAAGTAATTGAAAATAGCATAAGGTACTGTAA
CTTCCAATCCACCAAATGTTCAATTCTTATTGACAGGTCTTAGACGTCAA
TCAACACTGGCAAAGCGATTACAACCAATTGATGGATGCGAACCAGCTTT
TAAAAACAAAATATTGGAATTTGAAACAGAAATATGAAGACATGAAAAAA
GAAAATGTTGAATTGATGGGCAGATGTGCAGAGTTGTGTCGAAAGAAAAT
TGATCAACAATTCCCTCAAGTTGAGAATGAACCGGTGGAGAAAAAAGTCG
AAACGTCGAAATTTACGGCAGACGATTTGGAGGCTTTGAAACAACAGGTG
AGTTTCAAAACCTGCTTTTCAAAATAAACTTTATATACCATATACACGTT
TTTACATAACAACATAATCACAAAATGATGGAACAAGAACATGTTAAGAA
CATTTTTAGGTTTAAAATTCAAAACAATGAGGAATATCCGAAGGTTTCAA
CAATTTTGGATATTCTTATAAAAAAGAAACGTGTATCCTCATAAACTGGA
ATTTAATTCTCGTCTTTTTCAATAAATAGTTGGCGATCTATAAACAAGAC
TTCATGGAGGAAAAGAAAGAACATCAGAACACGTCTCGTCAAAACAACAA
ACTGAAAATGGAGCTCCGACAACTGAGACAAACGGTGGATGGGTATTTCA
AAGACAATCAATCCATGAAGGAGAAATATCAAAAATTATATGCAGAGAAA
AATCACATTGTGAATGAACTTCAACGGTTGTCAAATCCGTATCATCAAGC
AATGCATTATGGGAATCAATATGGTAGACGACCGATCATTGAAAGTTATA
CCTTGAAACCACTTCCGTGTTGTGGAGCTGAGGTATGTCTAAAAGATTTT
ATAATTCGAATTCGCTATTTTCGTTCACCCCTTTTTTAAAGCAAGTCATT
ATGTTTTGATTTTTGACATCCTCTTCGAAAGACCCCTAGCCTTTTTTGCG
TGATGAAGAGATTAGGGATTTCCTTTTCGGATTTGGTAATGAACAATTTA
TTGTCATACTGTAATAAAAAACAGTATCATCAACCATTTGCTTTCGAAAA
AAAACTATAGGTCTATAGTCTATAGAAACTTGAAACAGTTTAGGAAAGGA
TAAATCACAATAAATCTTTAAAGTTTCGAAAGCTTGAATAACCACGATAA
AAAAATGACACTTTGTTGTATCAACTTTCGAAAGCTTTCGCGACACCCTG
TGATGACCTTGTATTGATCTACTTATTTAGCATGACAGCGTCTTTATAAA
ACACGTCAGGACGATTAAAAAAAAATTCTTTGCATATAAGGAGGTCAAAT
TCATATTATAGCAGTGGAATAGTAAAGTAAAACCTTCAAAACTTTTTCAA
TCAATGGAATTTGACATACAGTACACGCTTTTTTAATAAGAATGGTGTAA
ATCCATTTCATCATGGACATTTTTATAAAGTGTATTCTTAAAAAAAAAGC
GTGTAATTAGAATAAGAATAAGTGTAGCCTGTTCAGTCGCAATACGTTAT
TGAATAACAATTCATTAAGTAGGTTAGTCATAAAAATCCAATATTTCATT
TGCATAAATTTTGTTCCGCATTTAAAAAAAATATTTACCAGGGCAAGAGT
ATTTTCTTAGAAAGGACATCGATTAATCAAGTTATCATTTTCTCATACTC
AGCTCACCCGAGATTGCGGATCATCTGAAAAGCGGAAGGAGCACACACAA
GACGGAACTGTACCTGAAATAAACAACGGAAAACTCAAATGTTGACGTAG
TGAATAAGTAGAAAGAAGGTATGTTGGGAGAAACGACATCTTGATCACTT
TCAAAAGTTTTATTGAAGGACGGATCAATAAACAGATTCTCATAACCTTG
CACCTCAACGTTCAATTCAATCGAAGATTGCGCAGGCGCATGGTCGTCAA
AATGTTGAATGAGCGAAAGTTTTGGCAATCAGACTGTGTTTTGGGCAGGA
GTGACCTAAAGCGCTTCATGCTAAAGAAGGGAGCTTCAGACCGGATTTGA
GGAATCAGAGAGATGAAGAAAGAAATTTAGAATTCATTCGTTGGAATGGA
ATTGGTATTGCACTCGATTTCCATCTCGTCTATGAGTAGGTTTGCATGTA
CGTATGATACAAATACACACGCAAGAGAAAGAATCAGCTGCAAAGACTCA
AAAATGTGTCGAAAATCACCACATATAGCAATGTGAAAGCTTCAAAAAAC
TTCCAAACCGGTTAATATATGGAAGGTTATTTATTACCTGAATTAAAGTT
TTATTGAAGATATATTTTGTACAAAATTTAGTCATTTAACTGTAGATAAT
ATCTAGGTATCATATATCTATTAGTGGAAAAATGTAATGTTAATATTTAT
TTATTGAAAGCTTGGGTAGAAAATATTTTGGTGAGCTTTCATCAGTGTGT
ATGTAAATAACGATGAAGATGCAATATATGTTGCGTATAAAAGATTTTTA
ACGAGAAGCAAACGACAAATCGATAAAATATACTTTCAATACTCATTTCC
AATTCAAGAGGACAGTTGAATTCTTGTAATTTGGTCAACAGTTCATAGTC
CAGGACAGGGATATCTAGAAAAACTCGTTGTCAATGGGGTGATATTTGCG
ATGTCACAGGGGTGTAGTTCATTAAAA Coding sequence (CDS) from alignment at sc0000214:375724..380200- >TCONS_00015630 ID=TCONS_00015630|Name=TCONS_00015630|organism=Clytia hemisphaerica|type=CDS|length=2988bp|location=Sequence derived from alignment at sc0000214:375724..380200- (Clytia hemisphaerica) CTCACCCGAGATTGCGGATCATCTGAAAAGCGGAAGGAGCACACACAAGA CGGAACTGTACCTGAAATAAACAACGGAAAACTCAAATGTTGATTGGCGA TCTATAAACAAGACTTCATGGAGGAAAAGAAAGAACATCAGAACACGTCT CGTCAAAACAACAAACTGAAAATGGAGCTCCGACAACTGAGACAAACGGT GGATGGGTATTTCAAAGACAATCAATCCATGAAGGAGAAATATCAAAAAT TATATGCAGAGAAAAATCACATTGTGAATGAACTTCAACGGTTGTCAAAT CCGTATCATCAAGCAATGCATTATGGGAATCAATATGGTAGACGACCGAT CATTGAAAGTTATACCTTGAAACCACTTCCGTGTTGTGGAGCTGAGGTCT TAGACGTCAATCAACACTGGCAAAGCGATTACAACCAATTGATGGATGCG AACCAGCTTTTAAAAACAAAATATTGGAATTTGAAACAGAAATATGAAGA CATGAAAAAAGAAAATGTTGAATTGATGGGCAGATGTGCAGAGTTGTGTC GAAAGAAAATTGATCAACAATTCCCTCAAGTTGAGAATGAACCGGTGGAG AAAAAAGTCGAAACGTCGAAATTTACGGCAGACGATTTGGAGGCTTTGAA ACAACAGATGGATAGCATGTTGTTGAGTATGGAATCACAAATAATGGAGG GAACAGATTGTCAATGTAATTGTCAAGCAACAAAAGACTTGAAAAAGCTC ACCCGAGATTGCGGATCATCTGAAAAGCGGAAGGAGCACACACAAGACGG AACTGTACCTGAAATAAACAACGGAAAACTCAAATGTTGATTGGCGATCT ATAAACAAGACTTCATGGAGGAAAAGAAAGAACATCAGAACACGTCTCGT CAAAACAACAAACTGAAAATGGAGCTCCGACAACTGAGACAAACGGTGGA TGGGTATTTCAAAGACAATCAATCCATGAAGGAGAAATATCAAAAATTAT ATGCAGAGAAAAATCACATTGTGAATGAACTTCAACGGTTGTCAAATCCG TATCATCAAGCAATGCATTATGGGAATCAATATGGTAGACGACCGATCAT TGAAAGTTATACCTTGAAACCACTTCCGTGTTGTGGAGCTGAGGTCTTAG ACGTCAATCAACACTGGCAAAGCGATTACAACCAATTGATGGATGCGAAC CAGCTTTTAAAAACAAAATATTGGAATTTGAAACAGAAATATGAAGACAT GAAAAAAGAAAATGTTGAATTGATGGGCAGATGTGCAGAGTTGTGTCGAA AGAAAATTGATCAACAATTCCCTCAAGTTGAGAATGAACCGGTGGAGAAA AAAGTCGAAACGTCGAAATTTACGGCAGACGATTTGGAGGCTTTGAAACA ACAGATGGATAGCATGTTGTTGAGTATGGAATCACAAATAATGGAGGGAA CAGATTGTCAATGTAATTGTCAAGCAACAAAAGACTTGAAAAAGCTCACC CGAGATTGCGGATCATCTGAAAAGCGGAAGGAGCACACACAAGACGGAAC TGTACCTGAAATAAACAACGGAAAACTCAAATGTTGATTGGCGATCTATA AACAAGACTTCATGGAGGAAAAGAAAGAACATCAGAACACGTCTCGTCAA AACAACAAACTGAAAATGGAGCTCCGACAACTGAGACAAACGGTGGATGG GTATTTCAAAGACAATCAATCCATGAAGGAGAAATATCAAAAATTATATG CAGAGAAAAATCACATTGTGAATGAACTTCAACGGTTGTCAAATCCGTAT CATCAAGCAATGCATTATGGGAATCAATATGGTAGACGACCGATCATTGA AAGTTATACCTTGAAACCACTTCCGTGTTGTGGAGCTGAGGTCTTAGACG TCAATCAACACTGGCAAAGCGATTACAACCAATTGATGGATGCGAACCAG CTTTTAAAAACAAAATATTGGAATTTGAAACAGAAATATGAAGACATGAA AAAAGAAAATGTTGAATTGATGGGCAGATGTGCAGAGTTGTGTCGAAAGA AAATTGATCAACAATTCCCTCAAGTTGAGAATGAACCGGTGGAGAAAAAA GTCGAAACGTCGAAATTTACGGCAGACGATTTGGAGGCTTTGAAACAACA GATGGATAGCATGTTGTTGAGTATGGAATCACAAATAATGGAGGGAACAG ATTGTCAATGTAATTGTCAAGCAACAAAAGACTTGAAAAAGCTCACCCGA GATTGCGGATCATCTGAAAAGCGGAAGGAGCACACACAAGACGGAACTGT ACCTGAAATAAACAACGGAAAACTCAAATGTTGATTGGCGATCTATAAAC AAGACTTCATGGAGGAAAAGAAAGAACATCAGAACACGTCTCGTCAAAAC AACAAACTGAAAATGGAGCTCCGACAACTGAGACAAACGGTGGATGGGTA TTTCAAAGACAATCAATCCATGAAGGAGAAATATCAAAAATTATATGCAG AGAAAAATCACATTGTGAATGAACTTCAACGGTTGTCAAATCCGTATCAT CAAGCAATGCATTATGGGAATCAATATGGTAGACGACCGATCATTGAAAG TTATACCTTGAAACCACTTCCGTGTTGTGGAGCTGAGGTCTTAGACGTCA ATCAACACTGGCAAAGCGATTACAACCAATTGATGGATGCGAACCAGCTT TTAAAAACAAAATATTGGAATTTGAAACAGAAATATGAAGACATGAAAAA AGAAAATGTTGAATTGATGGGCAGATGTGCAGAGTTGTGTCGAAAGAAAA TTGATCAACAATTCCCTCAAGTTGAGAATGAACCGGTGGAGAAAAAAGTC GAAACGTCGAAATTTACGGCAGACGATTTGGAGGCTTTGAAACAACAGAT GGATAGCATGTTGTTGAGTATGGAATCACAAATAATGGAGGGAACAGATT GTCAATGTAATTGTCAAGCAACAAAAGACTTGAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00015630-exon-sc0000214-1575043694:380023..380200 | TCONS_00015630-exon-sc0000214-1575043694:380023..380200 | Clytia hemisphaerica | exon |
TCONS_00015630-exon-sc0000214-1575043694:378054..378314 | TCONS_00015630-exon-sc0000214-1575043694:378054..378314 | Clytia hemisphaerica | exon |
TCONS_00015630-exon-sc0000214-1575043694:377519..377821 | TCONS_00015630-exon-sc0000214-1575043694:377519..377821 | Clytia hemisphaerica | exon |
TCONS_00015630-exon-sc0000214-1575043694:375724..376698 | TCONS_00015630-exon-sc0000214-1575043694:375724..376698 | Clytia hemisphaerica | exon |
TCONS_00015630-exon-sc0000214-1510915933:380023..380200 | TCONS_00015630-exon-sc0000214-1510915933:380023..380200 | Clytia hemisphaerica | exon |
TCONS_00015630-exon-sc0000214-1510915933:378054..378314 | TCONS_00015630-exon-sc0000214-1510915933:378054..378314 | Clytia hemisphaerica | exon |
TCONS_00015630-exon-sc0000214-1510915933:377519..377821 | TCONS_00015630-exon-sc0000214-1510915933:377519..377821 | Clytia hemisphaerica | exon |
TCONS_00015630-exon-sc0000214-1510915933:375724..376698 | TCONS_00015630-exon-sc0000214-1510915933:375724..376698 | Clytia hemisphaerica | exon |
TCONS_00015630-exon-sc0000214-1491911889:380023..380200 | TCONS_00015630-exon-sc0000214-1491911889:380023..380200 | Clytia hemisphaerica | exon |
TCONS_00015630-exon-sc0000214-1491911889:378054..378314 | TCONS_00015630-exon-sc0000214-1491911889:378054..378314 | Clytia hemisphaerica | exon |
TCONS_00015630-exon-sc0000214-1491911889:377519..377821 | TCONS_00015630-exon-sc0000214-1491911889:377519..377821 | Clytia hemisphaerica | exon |
TCONS_00015630-exon-sc0000214-1491911889:375724..376698 | TCONS_00015630-exon-sc0000214-1491911889:375724..376698 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000214 | supercontig | sc0000214:375724..380200 - |
Blast
The following BLAST results are available for this feature:
|