TCONS_00015642 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015642
Unique NameTCONS_00015642
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length713

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015642 ID=TCONS_00015642|Name=TCONS_00015642|organism=Clytia hemisphaerica|type=transcript|length=713bp
ACGCTATAAAGAAATTCTTAAAGCATACAAAAAAACTGTAAAGAGCTTAA
AAAACGAATTTCTTCGGAAAGCTCTATCTTCGAAAAATCCATCGATAGTC
TGGAGNAACGCTTATTgataaacttaaaaagttaaactTTAGTTCCATGT
CATTGCAAATCATTATAAGCTATCTCACAAACCGTCAGCAATTTGTGCAA
GTGAACGATAAAAGATCACCCGTTCAACCCATTCACTTTGGTGTCCCTCA
AGGCAGTATTTTGGGTCCAGTTTTATTCAACCTATATGTTACCGAATTAT
CTGACCAAATCTCCTCTCTCAGTATCCAATATGCTGATGACACAACACTT
TATCGTCACTCAAAAATTCGTGATATACTTCAATGCATCCGGGAAATCGA
GATTGATATCAAATCACTTTTCAACTGGTCAGCTGATCATAATCTCTTGT
TCAATGCTGATAAACTGCAATACATCATCTTTTCAACCAAACGTCTAGCG
TCATACAACAAATTATGTAGTGACTACTCGTATCTTATTTCttgttcaaa
aaaatcaattgaacaaaaagaagTCGTCAAGCTTCTTGGtcttcattttg
ataaaaatctatCCTGGTCCGACCATATCAACCAAATTATAAAATCCAGT
CATGGTACCATTCGAGCTCTTCGTAATTTCCAACGTTTCACACCATTTAA
AGTTCGGAAATCA
Run BLAST on NCBI

protein sequence of TCONS_00015642-protein

>TCONS_00015642-protein ID=TCONS_00015642-protein|Name=TCONS_00015642-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
MSLQIIISYLTNRQQFVQVNDKRSPVQPIHFGVPQGSILGPVLFNLYVTE
LSDQISSLSIQYADDTTLYRHSKIRDILQCIREIEIDIKSLFNWSADHNL
LFNADKLQYIIFSTKRLASYNKLCSDYSYLISCSKKSIEQKEVVKLLGLH
FDKNLSWSDHINQIIKSSHGTIRALRNFQRFTPFKVRKS
Run BLAST on NCBI

transcript from alignment at sc0000214:277185..277897

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015642 ID=TCONS_00015642|Name=TCONS_00015642|organism=Clytia hemisphaerica|type=transcript|length=713bp|location=Sequence derived from alignment at sc0000214:277185..277897 (Clytia hemisphaerica)
TGATTTCCGAACTTTAAATGGTGTGAAACGTTGGAAATTACGAAGAGCTC
GAATGGTACCATGACTGGATTTTATAATTTGGTTGATATGGTCGGACCAG
GatagatttttatcaaaatgaagaCCAAGAAGCTTGACGActtctttttg
ttcaattgatttttttgaacaaGAAATAAGATACGAGTAGTCACTACATA
ATTTGTTGTATGACGCTAGACGTTTGGTTGAAAAGATGATGTATTGCAGT
TTATCAGCATTGAACAAGAGATTATGATCAGCTGACCAGTTGAAAAGTGA
TTTGATATCAATCTCGATTTCCCGGATGCATTGAAGTATATCACGAATTT
TTGAGTGACGATAAAGTGTTGTGTCATCAGCATATTGGATACTGAGAGAG
GAGATTTGGTCAGATAATTCGGTAACATATAGGTTGAATAAAACTGGACC
CAAAATACTGCCTTGAGGGACACCAAAGTGAATGGGTTGAACGGGTGATC
TTTTATCGTTCACTTGCACAAATTGCTGACGGTTTGTGAGATAGCTTATA
ATGATTTGCAATGACATGGAACTAAagtttaactttttaagtttatcAAT
AAGCGTTNCTCCAGACTATCGATGGATTTTTCGAAGATAGAGCTTTCCGA
AGAAATTCGTTTTTTAAGCTCTTTACAGTTTTTTTGTATGCTTTAAGAAT
TTCTTTATAGCGT

Coding sequence (CDS) from alignment at sc0000214:277185..277897

>TCONS_00015642 ID=TCONS_00015642|Name=TCONS_00015642|organism=Clytia hemisphaerica|type=CDS|length=567bp|location=Sequence derived from alignment at sc0000214:277185..277897 (Clytia hemisphaerica)
TGATTTCCGAACTTTAAATGGTGTGAAACGTTGGAAATTACGAAGAGCTC
GAATGGTACCATGACTGGATTTTATAATTTGGTTGATATGGTCGGACCAG
GatagatttttatcaaaatgaagaCCAAGAAGCTTGACGActtctttttg
ttcaattgatttttttgaacaaGAAATAAGATACGAGTAGTCACTACATA
ATTTGTTGTATGACGCTAGACGTTTGGTTGAAAAGATGATGTATTGCAGT
TTATCAGCATTGAACAAGAGATTATGATCAGCTGACCAGTTGAAAAGTGA
TTTGATATCAATCTCGATTTCCCGGATGCATTGAAGTATATCACGAATTT
TTGAGTGACGATAAAGTGTTGTGTCATCAGCATATTGGATACTGAGAGAG
GAGATTTGGTCAGATAATTCGGTAACATATAGGTTGAATAAAACTGGACC
CAAAATACTGCCTTGAGGGACACCAAAGTGAATGGGTTGAACGGGTGATC
TTTTATCGTTCACTTGCACAAATTGCTGACGGTTTGTGAGATAGCTTATA
ATGATTTGCAATGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008725XLOC_008725Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015642-exon-sc0000214-1491911889:277185..277897TCONS_00015642-exon-sc0000214-1491911889:277185..277897Clytia hemisphaericaexon
TCONS_00015642-exon-sc0000214-1510915933:277185..277897TCONS_00015642-exon-sc0000214-1510915933:277185..277897Clytia hemisphaericaexon
TCONS_00015642-exon-sc0000214-1575043694:277185..277897TCONS_00015642-exon-sc0000214-1575043694:277185..277897Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015642-proteinTCONS_00015642-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000214supercontigsc0000214:277185..277897 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.43602	0.713987	1.42667	1.86583	0.740181	1.14835	1.22721	1.55722	1.09824	1.64062	1.57318	1.44876	1.70152	0.999775	0.748284	1.41556	1.96609	0.884104	1.1972	1.30264	4.89918	4.24198	0.759665	2.66814	1.13084	1.28388	3.29781	4.01934	3.81602	3.48672
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015642 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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