TCONS_00015656 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015656
Unique NameTCONS_00015656
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length246

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015656 ID=TCONS_00015656|Name=TCONS_00015656|organism=Clytia hemisphaerica|type=transcript|length=246bp
ATAAGCTCACATTTCCAgtttgaagaagaaaaggagTGGCATAATGAAAA
GAGTGCTTCAGAAAACGTTCTCAACCTTGATTTAACACAACTTTCGAATG
AAATCATCAATATGCAACCAACTGTTAAACTGCAATTACAAGATACCGAT
AGCAGACTTGGTTATTGCGTCCGAAACTTGTCCGAACTTGCATCCGTCGA
TAGTGAAGCTGCTTCAACAGCATCAAATTTCAACACAAACGGCGCG
Run BLAST on NCBI

transcript from alignment at sc0000215:140979..141837+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015656 ID=TCONS_00015656|Name=TCONS_00015656|organism=Clytia hemisphaerica|type=transcript|length=859bp|location=Sequence derived from alignment at sc0000215:140979..141837+ (Clytia hemisphaerica)
ATAAGCTCACATTTCCAgtttgaagaagaaaaggagTGGCATAATGAAAA
GGTCAGTCAGTTTTTTCGTTGATCTTTCTAGAGAACTACGTTTACAATTC
TTTGTCAACTTATAGCCCTAATACTATTTTACACTGTAGAATTTAAATCA
AATTACCACACCCCAACACTCTGGCAAAAATGCATATTCCACAGGAAGGC
GATTTTAAGATTTGAGTGAAGGAGATATGACGTCTCAAACTTTTCCTATT
TTTACCCAGAGTGCTTCAGAAAACGTTCTCAACCTTGATTTAACACAACT
TTCGAATGAAATCATCAATATGCAACCAACTGTTAAACTGCAATTACAAG
ATACCGTAAGTTTGACACCCCTTTTTATACCAGAtacaatacacgctttt
tttaagaatatcttctataataatatcagggtgaaaattggccaaatcgt
aagaataccctctagggtgagtttcacaattttgataagaatacagtcat
tttgtatttggttaacagaaaaactGGGTTTTTGTTCTTTGTCTGTTGCT
CCATATGCATGAGAGCTTTCTATTCTTCACATAATCTGGTTGAATCGAAA
CTATCCTTGTCTTCTTAAGAGGTGGACGTTTCATCGTCAGTGGATGCTTT
ATCCGTTTATAAAAGCTTAAACCTCTGTTTCATCAACCACAGCATTCAAT
TCAAAGCAAACTTTAGGGCAATCTCGATCATATTATTATCAAATCTCTCT
TTCTTTTTAGGATAGCAGACTTGGTTATTGCGTCCGAAACTTGTCCGAAC
TTGCATCCGTCGATAGTGAAGCTGCTTCAACAGCATCAAATTTCAACACA
AACGGCGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008735XLOC_008735Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015656-exon-sc0000215-1491911889:140979..141029TCONS_00015656-exon-sc0000215-1491911889:140979..141029Clytia hemisphaericaexon
TCONS_00015656-exon-sc0000215-1510915933:140979..141029TCONS_00015656-exon-sc0000215-1510915933:140979..141029Clytia hemisphaericaexon
TCONS_00015656-exon-sc0000215-1575043694:140979..141029TCONS_00015656-exon-sc0000215-1575043694:140979..141029Clytia hemisphaericaexon
TCONS_00015656-exon-sc0000215-1491911889:141238..141333TCONS_00015656-exon-sc0000215-1491911889:141238..141333Clytia hemisphaericaexon
TCONS_00015656-exon-sc0000215-1510915933:141238..141333TCONS_00015656-exon-sc0000215-1510915933:141238..141333Clytia hemisphaericaexon
TCONS_00015656-exon-sc0000215-1575043694:141238..141333TCONS_00015656-exon-sc0000215-1575043694:141238..141333Clytia hemisphaericaexon
TCONS_00015656-exon-sc0000215-1491911889:141739..141837TCONS_00015656-exon-sc0000215-1491911889:141739..141837Clytia hemisphaericaexon
TCONS_00015656-exon-sc0000215-1510915933:141739..141837TCONS_00015656-exon-sc0000215-1510915933:141739..141837Clytia hemisphaericaexon
TCONS_00015656-exon-sc0000215-1575043694:141739..141837TCONS_00015656-exon-sc0000215-1575043694:141739..141837Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:140979..141837 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
39.2124	33.4585	16.6494	14.4789	4.40668	2.61166	3.15086	3.93306	9.63771	10.2324	5.79359	11.9695	4.88981	2.25694	11.1331	15.4322	14.1051	16.3429	1.73682	3.63492	8.68835	4.62314	18.7334	14.4767	0	0	1.12017	4.78189	6.34707	4.61904
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015656 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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