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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015657 ID=TCONS_00015657|Name=TCONS_00015657|organism=Clytia hemisphaerica|type=transcript|length=1814bp
CAAACCGTTACGTTTACGTAATTTTTATCTTCGGTTTTTCCTTTTAGCAA
GATACACGAAAAATATTGACATTGTTATAACTCACTTCAAGGACTTCGTC
ACAGGTTACTACAAAAAAAGAGAACATCTCTGGCACAGAGTTGGATTGTA
TAAGGCGAGCTGTGTGTAGAAGACCAACTGACGACACTCTTGCTTGAGAT
TTGGAAAGGATTGATATCTGGATTGAAACTtgataagaagataagaagat
cAGATATACAGATCATGGCATCGGTGCGAGTTCATCCTCCTTTACGACGA
CAACGCAGTGAAGCTGAAATCCACTCATGCGATCAAGTGCCCGCTAACAC
AAGCCATCACATCAAACATTTAGACACTCACGAAAATCAAGACcattttg
gtgaaaaatttcATAGAAGTCTAAGTGGTGGAGGTGTTCCAGACTCTGAC
GCGCCCATTAAATCTACTCCCGCCCCTGCAGCAGTAAGGCGTGTATCATT
ATCCTCCCTTGAGGAGTCGCACTACAGCAAAGCTATGATGAGTGGCGCTT
TTGAAAGTGAATCCGAAAAAGCGCGTAAAGCTCGCCGTAAGAGTTTCGAT
AAAGTACGTAAGCGGTCGGATGACGAAAGACGGGTCTCACGCAACGAGCG
TAAaagcagcaacaacaacaaccagcCAGTGGTTGGCGAAGGTTAAAAGC
CTTCCTTGGTGATCTGGGGGATTGTCTTTGTATTTTAATAGCTCTTAACC
GATTGTTTGATGCATgggtattttgatttaaatattaTTGCGTTTTAAGA
CAATAATCTTATAATGGTGTGCTTACAAAGAACTACTTTCTAAAGTTTGC
CCGGAAAAAAGCGAATCCATGGTTGGATGAAACTATGTATGAAAAGCTCT
TTATATCTAGGCTGCTGTATCTTGTAATTTCTGGACAGACTATTTAATCA
TATGGAGATGGAACTAAATACTCCAAAGCAACTCTTTTTGAATAATCTAA
AACTTCAAGGAAAGCCATGTATAGAATTTTCTTGACGAACTTTTGAGTCC
TTTcagactacacgctttttttataccagagtgaaaattggccaaatcgt
aagaataccctaagaataccctttAGGGTAttaatttcacagaatttgat
taGAAtgcagtcattttgtatttggttaacagaaaaaactgcttcctttg
ttagagataaattgaagctttgatGAAGAAATGTAATTTAAACCCAAATG
TTCGCTCAAAAGTGCAAAACTCATAAATTGGTTATTTCtcgtgtttgtaa
aaaagtcaagtttaaaaaagtaagaacacgttaagaatatttcaccctga
attttggcactttcttaagaagatatgaccctcatccaaagtacactata
ttcttataataaaaaaagcgtgtataattttttcaatgttaaTAAGGAAA
ATGGAGGTTCAGCTATGTCATTTCGGATCGTCCTCTCGTACTCTTGGAAC
ATTCTGTCCAAAGTGTAAGGGTTCCATGGGGGCTGTtaccacagatttct
gtaaagcccacAGGGCTAGACAGCGTGCTTTAAACTTTTCtaatcaaaaa
agtgaatatcgcagaAATTCTCAATTCTTGCTTCGGTCCAGTTTGACTTG
AATAAAGGTTCAATATTTTTAGGGTGATTGATTTCCATTTTTTGCTACAT
AAATTATGAAActattattttgtaaaaaggaaaatacagaaattttgttt
gtaaaatattgCTAACGATCCTCAATCGCGGtgtaaatatataaataatt
tacttttttaagTA Run BLAST on NCBI protein sequence of TCONS_00015657-protein >TCONS_00015657-protein ID=TCONS_00015657-protein|Name=TCONS_00015657-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
MASVRVHPPLRRQRSEAEIHSCDQVPANTSHHIKHLDTHENQDHFGEKFH
RSLSGGGVPDSDAPIKSTPAPAAVRRVSLSSLEESHYSKAMMSGAFESES
EKARKARRKSFDKVRKRSDDERRVSRNERKSSNNNNQPVVGEG Run BLAST on NCBI transcript from alignment at sc0000215:143446..151558+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015657 ID=TCONS_00015657|Name=TCONS_00015657|organism=Clytia hemisphaerica|type=transcript|length=8113bp|location=Sequence derived from alignment at sc0000215:143446..151558+ (Clytia hemisphaerica)
CAAACCGTTACGTTTACGTAATTTTTATCTTCGGTTTTTCCTTTTAGCAA
GATACACGAAAAATATTGACATTGTTATAACTCACTTCAAGGACTTCGTC
ACAGgtatgatttctttttgatttttcctggtaAGTATTGAACTGATGTG
ATATTAGATGTATTTTGAAGGGGTTTCAAGGTTTACGGTGACACGGTATC
GGCCTgtccggtatttcggtatttaagaaaaaaagtacGGTATTCTGGTA
TTTGAAATGCTGCCGGTGACGGTAAATTGGTGTCAATATCTCAAATGCCT
TGGGGTTTACACATTAATCTAAAgttgaatatttttctttttcctcctAT
TTCTATTACATACacctgtttttttataagaacatccaaaaattgaagcc
ttcgaatgtttttaacttttatagttttaagcctaaaaatgttctttaaa
ctTGTTCACTTTTTTGTGAGAAacttttcctaagaaaataggtgttcTAG
GCACTTCAAAGCCATTAGATGATCTTAACttatttatgatattttgacca
tggaagccttgtgttcttataaaaaaacgtgaagtTAAAAAGGAAAATAG
GATGAGCACTAACAGCAAGCAAACAAGCTTGATTAGCATAGAAGCTGGAA
GTTCTCTTTAGGCTATCGGTTTCATTGAAAAAGCTGTTAATATTATATTG
TTGTTCTCGAATTTTCGACTGGTCCAGCAGTGCTTTTCATAAATCATTCa
tatcatcatttttttcatcatttaatCCAATCCTAAGTAAatgggaaaaa
attataatttcgatctgttttttttttacttgtttcccctATAAAAAGAC
TGGTTTAATATAGTTTTGTTATGAGAAAAGTTATATCTTTTAGTTTTGCA
GATTTGGCTTTGCAGCTCTTTTCCAGAGTTCAAAGCCTTTTATAACAGTT
ATATGTCACAATTTATTTCGACTTTTTAGCTGGAGCTCGAAAATAAGATG
TGAACATAGATAGGAACTTGTTTTTTATCGCTATCGGgggatattttttt
gtatttgtacTTTCATTGACCAATTTGAGGAATTTTgtttccaaaaagtt
ttttgtgtAATATTGCTGAACTTTTTTTTCCTGTTCTCATTTTTCTAGAT
TTTGAAGCTCTAGTGTTACAGATAGTAGTGAGATTTTCTTCCTACgatta
tttttctcttattaAAGGGCTTAAAAAGAGCCTAAATCAGTATCAGTATT
TTTTTAGCGTTGGCTCAAAttcattaattttcttctttggatttagtcaa
aatttcagcctcatTCCTATGGTTAACTAActgttcttatagaaaagcGT
GTAGGTTGTTTGTTACATGATCTCCGTGTTTGCAATCCTCTTAACatcta
aaaataatatttcaggTCTCTTTTTCTCACTAAGATTTATTACTTATTCT
TTttatgaatttcaagttttcaatCGATACGAAAATTGAGTCGGGGCTGT
TTCTTCTCAGGTTGGTGATTGAAAATAATGTTGTTTCTTTTGAAGAGGAA
AACATTTTCCATTATCTTTATTGGTAGGCTCTTGGAAGGTTGGAACGTAA
TTTAATGACCCCTTGATGTTGTTCTCCTTCCCTTTATTTCACTAGTTTTC
AAGCAACAATTCGGTGGACGAAAGAGGTTTATTCGGAGCTTTGGAGAACT
TCTTTGTAAAGTAAACCTTTCGATCTCTTATGATACAGTAGTAATAAGTT
ATAATCAGAGACTATGGGTGGATAATCTATGTAGGATTTGAAGTCATTCA
TTTCCAACAACAGTTGCTTGGCCCGTAGTGTTTTCTCAAAGCTATTGGat
tgaaaaaaacattcaacagagtttatgaaatgtaaaatgcaaaaacaaag
aaagcgctAGATACGATATACGGCATCACTTTCTCTTGCTTGTGAAAGAT
TGATGATTCCTCTGTAACCTTGAATTTGTATTTTGGAAAATACAGACATT
GGACTCTTTCTCTTGCTTTTCTTGgaacctttttgtttttatagcaAACT
TTTTGGTCAATAGGACCTCAAATAAACAGTATTTCGAaagtttgtatttt
tctttttgcaccTTTTTTCCATCGTTTTTCTTCAATATTGAACTTTCTTA
TAGATcttgctttttttataatttttttcttttttcatgatATCATGTTT
TACTTTTCAGTTTTGATGTCATGTTGTACTGGTGATAAAGAGGAGGAATG
TTAAGGTCTTTTTAAGGAAAAGGAGTTCTTCTTTCcgaatgaaaatttca
aactttcttagATCAAGACCCAAATGAGACTCATGTATGTTGATAGTAGT
CCAGAAGTTGGacctcaactactttttgcctttaataATTCTGATGGGAG
GATAGTATCGTAGCGCCATCATTCAAAACAGAAATtgaagatagtatacg
gcagattttctgactaGGTCGATAGTTGTGCAACGGTGGAGCTTTTGGGA
AGGGATGGATAAACCATTTTGCTttcaattctcaacttcagtcaAGCTTC
ATCAAACacgatttagattttttctgTCCGTAAGAGTAGGCAAGAAAtcc
gaaaattgaccaaaatttgtaATGGTCGATTCTCGCGAAATGTATTACTT
GGGTTCGCACTTTAAAGTTTGTAGATTCTCTGTAAACTGAAAATTAATCG
GAATGGTAATGATTTGTAAAACTATCATTCCTtgttgaatacacgttttt
ttataagagcatcaaacattttttaagccttccgatgttcttaacttttt
gaattttaagcctaaaaatgttcttaatatgttcttaatttcgcaatatt
ttgagtatttttgtccattttcctaagaaattggctgtttttgaatccgc
gaagccttaaaatgttcttaacttgtttttgatattttggccaccaaagc
cttatgttcttataaaaaaacgtgtagctggAGAATCTTCGCAGTTTATT
CACAATTCGGAGAGCTAGAACACTCACCAATTCTTAGAAAGTTAAGCAAA
GTGATATCAAAAGCTCCTTTGATGATATTTTACGTTTATTGGATCTGATG
GATTACTTTCCTCTGGTAATCTTTTTAGAATAGTGGTCATAATTTcaaaa
ctcatataaatttgACACGGTGCTTTAAATTTAATTTagtctttgttttg
tttttttattttctctgaTGACTGTAGCTCCAAATGTGACTGGATACGAT
TAAAGCAAACTCGAAATATAGCGCTTATTGTGAAAGGCTTGAGCATTACT
CTATTGGTAACTTACAGGTAAACATACTCTAAAAATGCTCATCGTAGGTT
CAGTTGCCATAGTCTTAGTATTCTTAATTCTTTGCTCAGTTTCATTATGC
ATTGGACGATGAAAAGGATCTGAGGTCATCTGTGTATATGGTGGTGTCGG
TGGTGTTTTATATTTCTTGTGATGTTGTGTTGCTTCCAATGATAAACCAA
TGGGCGCGGGAAGTGTTTTTACGGCAGGGAACTACCACTGTCAACCTCGT
GTGTTGTTAGagtacattcttataaaaaacttataTTGCTTAAAATCTAA
ATTCGCATGAGAAAGGCGGGAAAACGTTTTCAAAAGTCTCTGATAGTTTT
TTGTTGCTATAAATATTCACAAGCTTCCGTTTAGGGCGTCACTTTCTTGA
GAAACTTTAAAGATTATTAATATTAAGAGGAATTATCAAAACAtctatac
gtttttttttataagaacaaactatgtaagaacataaggcttcgatggca
aaaatgttaagaacaagctaagaacattttaaggctttgcggactcgaaa
acaaccgatttcttagaaaatgggtaaaaatggtcacaaaatggtggaaa
taagaacattttaagaacatttttaggctgaaaacccaaaaagttaagaa
catcctaatgatgatcttataaaaaagacatcTATACTTATCATGTTGTT
CATCGTTTTATAGAAATCTCAAATTATAAAGTTTTAAAGATACTGAAACT
CAAGCTGCaaattttctaatattttttaaaattaagaaataatatggaat
ttttttcaaatatttttgttgaaatattttcaattttttgaaatttgaaa
cgaATCTATTGGCTTTTATGAGCTTTTGGTTTCTTCAGgttattgaaaaa
atcacttcagTTTTTGTGAGgaagtttttcttgatttttgtgatAGAGTG
AGAAAattgctttttgatattgaagtAATCACACTGCATGTAGTTTAAGA
TAGCACACATTCATATAGGGGGACAGCTTAGTTTGTGGAAATTTGTGATC
GAAGAAACATGAAGGTCTTGTGAAGAGTGTTAGTGTATCTTGCTTTAGGG
GGAAAATTTACGTTTCGAATTCAGAAAAATGGTGTTTTtgatttaagcct
gaaatttcTTTTCGAGTTTTAGCCAAAAATTGAACCTTGGTGTTCTTCTT
AAGTGTTATCTGCTATTTGCTGATGTATACTAAGTAGCTCTTACagtctt
ttttatgagaacattgGGGcacaatttgagaaaaatccCTAGCCTTGCAC
GCGTGAATTCTAGAAACAAACCCAGGGCCAAAATAGAGAATTAAAATCCA
ATTTTACAGGATGAAAATTTCAGGTCCAGTGTCAAAAAACACACCGAGCC
TTAACTAAACTTTACTGTGAAGTAGTTCTTGTTAAAAAAGTGTATCTGTG
GATGTCATGTGACTCCTGACTATTGCTTTCGTCAGCATTATAATTTCACT
CAAAAGTTTTTATAATACAAATTCTATAAATAAGACTGTGGTTATTAAAA
TGTAAACCTATTTTGTTGCTTCAAATGGATGCTGATTTTATAAATGAGAT
TAAGTAAGGAGCTTTATTAAATATCAGTATGATCTTATTGGGATACTCTT
AATCGCACTCAGTTTCAATATTTATCTTCATGTTATGTTGTAGTCGTTCA
AGACTTTTCTGCGGCTCATTTTAGTATTTAGAATTATACATAGGAAAGAT
TTTTATCTGACATTTTTGATACACGCTAGATCACCTTCACCTACTATTCA
GCTACAGTTTGAGTCTTGCAAACCAGGCTATAGTGTAATTTCACTCTCCA
NCACCTTCACCTACTCAGCTACAGTTTGAGTCTTGCAAACCAGGCTATAG
TGTAATTTCACTCTCCATTATTGAAATTTTAGGAGTATTCTCTCAGTACT
GAAATAAGATcatgattttttacaaaagttggTCATATTTGTACATAAAT
TTTTATAGACTGTTTCGtcatttttgatatttcacCATCAGCTCGGGTGA
AATACATAATGTTGCTCTCACGACCAAGAAATCAGCATGCTAAGCTAAGG
ATTACAGGGATTACATAATAAAGGATAATTGATGATCATAATTCTGTTGA
AATGAGATGCTGTGACTTCACAATCATCTCTTCTATTCCTGTTTATTTTC
AAGCTTGCTCCACAACTGAGATCTTTTAATTAATTTCAGTTGGCTCTCAG
CTGAtgttcattttttgaaagctttttatAGGAAtccaaagattttgatt
tttgtaataATCGTTAATATACTGCCTTAAGGCTTCAGGAGACCCAAAAG
AGAGGGTTTTAAACTGACTTCATTCAAAGTGGGCTAGTGAGCTTCGATGT
TTTTCTTTCAACACAAGAAACAAGTTTGACTTTCAGACTCGTCTCACCCA
CTCCGCTCTCTTCTGAAGTTTTATGATTTCTTACAGAAAACATATTTTCA
CATTATATTGAAAAATCTATTTGAATTGCTTTTCTCAAGGTTACTACAAA
AAAAGAGAACATCTCTGGCACAGAGTTGGATTGTATAAGGCGAGCTGTGT
GTAGAAGACCAACTGACGACACTCTTGCTTGAGATTTGGAAAGGATTGAT
ATCTGGATTGAAACTtggtaaaaacttttttcttcttttgctgatcattt
ttttcgatttttggttttataaaGTTCATCTTCACACCCCGTTTTCACAG
ATCCGGTAGGATTTTTCTcactcagtggggataaaaataacgatCTAAAA
CACGATGGTTTttttggctggggatttgaattccattgttatCAAGTCAG
AAAACTCAGTGGAAATGGGGAAAATCGCTTAATACTTTGcagattggttt
atttgattattttcagtgaggacaaaaattggagtataattttccactgg
ggacgatattttggcaaatttttccggtgggaagggttcccagtgggtct
gtgagaaggggttgtatCTTTGATACATTGTTGGATCTGCATTACAAAAA
ATCTATCGTTTTCCGGGGAAAAGTGGAGGAGATTCTCGAAACACTTATAA
TGTTTTTACTATTCCTAGGAGAGTCTGTTCGATTTGCACAGTTTTACAAA
TTCAGTGTTGTTTCCTTTGACTGCGAATGTTCTAATTCCACAGTATGTCT
TgtaatattttatctttttgaacATTTCTAGataagaagataagaagatc
AGATATACAGATCATGGCATCGGTGCGAGTTCATCCTCCTTTACGACGAC
AACGCAGTGAAGCTGAAATCCACTCATGCGATCAAGTGCCCGCTAACACA
AGCCATCACATCAAACATTTAGACACTCACGAAAATCAAGACcattttgg
tgaaaaatttcATAGAAGTCTAAGTGGTGGAGGTGTTCCAGACTCTGACG
CGCCCATTAAATCTACTCCCGCCCCTGCAGCAGTAAGGCGTGTATCATTA
TCCTCCCTTGAGGAGTCGCACTACAGCAAAGCTATGATGAGTGGCGCTTT
TGAAAGTGAATCCGAAAAAGCGCGTAAAGCTCGCCGTAAGAGTTTCGATA
AAGTACGTAAGCGGTCGGATGACGAAAGACGGGTCTCACGCAACGAGCGT
AAaagcagcaacaacaacaaccagcCAGTGGTTGGCGAAGGTTAAAAGCC
TTCCTTGGTGATCTGGGGGATTGTCTTTGTATTTTAATAGCTCTTAACCG
ATTGTTTGATGCATgggtattttgatttaaatattaTTGCGTTTTAAGAC
AATAATCTTATAATGGTGTGCTTACAAAGAACTACTTTCTAAAGTTTGCC
CGGAAAAAAGCGAATCCATGGTTGGATGAAACTATGTATGAAAAGCTCTT
TATATCTAGGCTGCTGTATCTTGTAATTTCTGGACAGACTATTTAATCAT
ATGGAGATGGAACTAAATACTCCAAAGCAACTCTTTTTGAATAATCTAAA
ACTTCAAGGAAAGCCATGTATAGAATTTTCTTGACGAACTTTTGAGTCCT
TTcagactacacgctttttttataccagagtgaaaattggccaaatcgta
agaataccctaagaataccctttAGGGTAttaatttcacagaatttgatt
aGAAtgcagtcattttgtatttggttaacagaaaaaactgcttcctttgt
tagagataaattgaagctttgatGAAGAAATGTAATTTAAACCCAAATGT
TCGCTCAAAAGTGCAAAACTCATAAATTGGTTATTTCtcgtgtttgtaaa
aaagtcaagtttaaaaaagtaagaacacgttaagaatatttcaccctgaa
ttttggcactttcttaagaagatatgaccctcatccaaagtacactatat
tcttataataaaaaaagcgtgtataattttttcaatgttaaTAAGGAAAA
TGGAGGTTCAGCTATGTCATTTCGGATCGTCCTCTCGTACTCTTGGAACA
TTCTGTCCAAAGTGTAAGGGTTCCATGGGGGCTGTtaccacagatttctg
taaagcccacAGGGCTAGACAGCGTGCTTTAAACTTTTCtaatcaaaaaa
gtgaatatcgcagaAATTCTCAATTCTTGCTTCGGTCCAGTTTGACTTGA
ATAAAGGTTCAATATTTTTAGGGTGATTGATTTCCATTTTTTGCTACATA
AATTATGAAActattattttgtaaaaaggaaaatacagaaattttgtttg
taaaatattgCTAACGATCCTCAATCGCGGtgtaaatatataaataattt
acttttttaagTA Coding sequence (CDS) from alignment at sc0000215:143446..151558+ >TCONS_00015657 ID=TCONS_00015657|Name=TCONS_00015657|organism=Clytia hemisphaerica|type=CDS|length=432bp|location=Sequence derived from alignment at sc0000215:143446..151558+ (Clytia hemisphaerica)
ATGGCATCGGTGCGAGTTCATCCTCCTTTACGACGACAACGCAGTGAAGC
TGAAATCCACTCATGCGATCAAGTGCCCGCTAACACAAGCCATCACATCA
AACATTTAGACACTCACGAAAATCAAGACcattttggtgaaaaatttcAT
AGAAGTCTAAGTGGTGGAGGTGTTCCAGACTCTGACGCGCCCATTAAATC
TACTCCCGCCCCTGCAGCAGTAAGGCGTGTATCATTATCCTCCCTTGAGG
AGTCGCACTACAGCAAAGCTATGATGAGTGGCGCTTTTGAAAGTGAATCC
GAAAAAGCGCGTAAAGCTCGCCGTAAGAGTTTCGATAAAGTACGTAAGCG
GTCGGATGACGAAAGACGGGTCTCACGCAACGAGCGTAAaagcagcaaca
acaacaaccagcCAGTGGTTGGCGAAGGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015657-exon-sc0000215-1491911889:143446..143549 | TCONS_00015657-exon-sc0000215-1491911889:143446..143549 | Clytia hemisphaerica | exon |
| TCONS_00015657-exon-sc0000215-1510915933:143446..143549 | TCONS_00015657-exon-sc0000215-1510915933:143446..143549 | Clytia hemisphaerica | exon |
| TCONS_00015657-exon-sc0000215-1575043694:143446..143549 | TCONS_00015657-exon-sc0000215-1575043694:143446..143549 | Clytia hemisphaerica | exon |
| TCONS_00015657-exon-sc0000215-1491911889:149285..149412 | TCONS_00015657-exon-sc0000215-1491911889:149285..149412 | Clytia hemisphaerica | exon |
| TCONS_00015657-exon-sc0000215-1510915933:149285..149412 | TCONS_00015657-exon-sc0000215-1510915933:149285..149412 | Clytia hemisphaerica | exon |
| TCONS_00015657-exon-sc0000215-1575043694:149285..149412 | TCONS_00015657-exon-sc0000215-1575043694:149285..149412 | Clytia hemisphaerica | exon |
| TCONS_00015657-exon-sc0000215-1491911889:149977..151558 | TCONS_00015657-exon-sc0000215-1491911889:149977..151558 | Clytia hemisphaerica | exon |
| TCONS_00015657-exon-sc0000215-1510915933:149977..151558 | TCONS_00015657-exon-sc0000215-1510915933:149977..151558 | Clytia hemisphaerica | exon |
| TCONS_00015657-exon-sc0000215-1575043694:149977..151558 | TCONS_00015657-exon-sc0000215-1575043694:149977..151558 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000215 | supercontig | sc0000215:143446..151558 + |
Blast
The following BLAST results are available for this feature:
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