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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015662 ID=TCONS_00015662|Name=TCONS_00015662|organism=Clytia hemisphaerica|type=transcript|length=989bp
AGAATGCGAAACTACGCAAGCAGGACAACGAGATCACACGCTTCTTGGAC
CAGCGATCTGAGCTTAAAGCTAAAATCACTAATCTTGTAAGATCAACTGA
CGCTCATAAAATGGCCAAAGAGCTAGCtgaacaaaaattaaaagaagaGA
AAATGAGATCTTCCGAACTTGAAGAGATTGTTAACGAATTACAGGAGGAG
GCTGGACATTTGTCTGGTAGTGGTGAAGATATCGCTGCACAACTGGAGGA
TGAAAAGCTGAAGACCTCCCAACTGGAAGATACTCTCACTAAATTGAGAG
ATCATAGTGAAGAAAGCAGGATTTGTGTAGAACGGGTTCAACAAGAGCTT
AAGGATGAGAAGTTAAGGGCGGATGATGAGAAAGCAAAGGCGGTTGATGA
AAAAAGAAGGGCGGACAATGAGAAGAAAAGGGCAGATAATCTTGAGGAAA
TGATGATGAAGATGCAAGTAGAAATGGAAGTGTTGAGGGCCACTTCCACT
AATTGCTCTTCGGAAACCGAATCCCCATCACCTCCAAAGTCTTTGGCAAC
TGTTGGTTTTGTTGAAGATATTGTGGAGAACTTTATCTTCGATATGGTTG
GAGGTTTGGTCAAGTCTGAACAGCTTGTTGCAAAAATCAAGTCTGGAGCA
CCACGAAACAAAGTTGAAGAAGTCGAACCAGTAATGGCTGCTACCTCCAA
AGATGAGGCCGTCAAAGAACCTATTGAACCTTTGAAACCTCGCAACATTG
AGGACGTTATATCCGAGTCTCATGGTCCACAACTGGAGAATTATTTGGAA
AGTTCTGAACAAACAAGACCATTATCAGATGGTTCGGAGTCACCAGCAGA
TCAAACAGTTTCTAACAGTGCACAGCAACAAGAAGAAGGATTGGTGGACA
ACGAAGTGGTGGAAAACGACCACGCGGACGAAGAATATTCATGTTCGTTC
GAAGAAGACGTTCCAACTCCTTCTGCATCTTCGTCTTCA Run BLAST on NCBI protein sequence of TCONS_00015662-protein >TCONS_00015662-protein ID=TCONS_00015662-protein|Name=TCONS_00015662-protein|organism=Clytia hemisphaerica|type=polypeptide|length=329bp
NAKLRKQDNEITRFLDQRSELKAKITNLVRSTDAHKMAKELAEQKLKEEK
MRSSELEEIVNELQEEAGHLSGSGEDIAAQLEDEKLKTSQLEDTLTKLRD
HSEESRICVERVQQELKDEKLRADDEKAKAVDEKRRADNEKKRADNLEEM
MMKMQVEMEVLRATSTNCSSETESPSPPKSLATVGFVEDIVENFIFDMVG
GLVKSEQLVAKIKSGAPRNKVEEVEPVMAATSKDEAVKEPIEPLKPRNIE
DVISESHGPQLENYLESSEQTRPLSDGSESPADQTVSNSAQQQEEGLVDN
EVVENDHADEEYSCSFEEDVPTPSASSSS Run BLAST on NCBI transcript from alignment at sc0000215:277380..278712+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015662 ID=TCONS_00015662|Name=TCONS_00015662|organism=Clytia hemisphaerica|type=transcript|length=1333bp|location=Sequence derived from alignment at sc0000215:277380..278712+ (Clytia hemisphaerica)
AGAATGCGAAACTACGCAAGCAGGACAACGAGATCACACGCTTCTTGGAC
CAGCGATCTGAGCTTAAAGCTAAAATCACTAATCTTGTAAGATCAACTGA
CGCTCATAAAATGGCCAAAGAGCTAGCtgaacaaaaattaaaagaagaGA
AAATGAGATCTTCCGAACTTGAAGAGATTGTTAACGAATTACAGGAGGAG
GCTGGACATTTGTCTGGTAGTGGTGAAGATATCGCTGCACAACTGGAGGA
TGAAAAGCTGAAGACCTCCCAACTGGAAGATACTCTCACTAAATTGAGAG
ATCATAGTGAAGAAAGCAGGATTTGTGTAGAACGGGTTCAACAAGAGCTT
AAGGATGAGAAGTTAAGGGCGGATGATGAGAAAGCAAAGGCGGTTGATGA
AAAAAGAAGGGCGGACAATGAGAAGAAAAGGGCAGATAATCTTGAGGAAA
TGATGATGAAGATGCAAGTAGAAATGGAAGTGTTGAGGGCCACTTCCACT
AATTGCTCTTCGGAAACCGAATCCCCATCACCTCCAAAGTCTTTGGCAAC
TGTTGGTTTTGTTGAAGATATTGTGGAGAACTTTATCTTCGATATGGTTG
GAGGTTTGGTCAAGTCTGAACAGCTTGTTGCAAAAATCAAGTCTGGAGCA
CCACGAAACAAAGTTGAAGAAGTCGAACCAGTAATGGCTGCTACCTCCAA
AGATGAGGCCGTCAAAGAACCTATTGAACCTTTGAAACCTCGCAACATTG
AGGACGTTATATCCGAGTCTCATGGTCCACAACTGGAGAATTATTTGGAA
AGTTCTGAACAAACAAGACCATTATCAGATGGTTCGGAGTCACCAGCAGA
TCAAACAGTTTCTAACAGGTAAATTCAATACAGCAAATTCTCTTTTTTGA
CTTGTTACCGATATATAATGAATCAACGGTTTAAGGCAAAAAGGAATATG
AATTATGTTGGTTCACTAGTCAAAATGATGTATTGACCTTTTGACACCTT
TTTGAGTTGTAAACACACATAAACCGTCTTTAAGGCTTCTTACCAATAGa
ttgtttgtttcttgatttcCCCCAAAAGGTGGCGAAAAATCGCTTGATGA
TGTATATTTTTGCTGACGAATTTTTTCAGTCAatgacattttttataagc
taTCTAAATCAGTTCATGTCAATTTTTCATCGACAAAAATTTGATACTTT
TTTTCTTAGTAGTGCACAGCAACAAGAAGAAGGATTGGTGGACAACGAAG
TGGTGGAAAACGACCACGCGGACGAAGAATATTCATGTTCGTTCGAAGAA
GACGTTCCAACTCCTTCTGCATCTTCGTCTTCA Coding sequence (CDS) from alignment at sc0000215:277380..278712+ >TCONS_00015662 ID=TCONS_00015662|Name=TCONS_00015662|organism=Clytia hemisphaerica|type=CDS|length=1974bp|location=Sequence derived from alignment at sc0000215:277380..278712+ (Clytia hemisphaerica)
AATGCGAAACTACGCAAGCAGGACAACGAGATCACACGCTTCTTGGACCA
GCGATCTGAGCTTAAAGCTAAAATCACTAATCTTGTAAGATCAACTGACG
CTCATAAAATGGCCAAAGAGCTAGCtgaacaaaaattaaaagaagaGAAA
ATGAGATCTTCCGAACTTGAAGAGATTGTTAACGAATTACAGGAGGAGGC
TGGACATTTGTCTGGTAGTGGTGAAGATATCGCTGCACAACTGGAGGATG
AAAAGCTGAAGACCTCCCAACTGGAAGATACTCTCACTAAATTGAGAGAT
CATAGTGAAGAAAGCAGGATTTGTGTAGAACGGGTTCAACAAGAGCTTAA
GGATGAGAAGTTAAGGGCGGATGATGAGAAAGCAAAGGCGGTTGATGAAA
AAAGAAGGGCGGACAATGAGAAGAAAAGGGCAGATAATCTTGAGGAAATG
ATGATGAAGATGCAAGTAGAAATGGAAGTGTTGAGGGCCACTTCCACTAA
TTGCTCTTCGGAAACCGAATCCCCATCACCTCCAAAGTCTTTGGCAACTG
TTGGTTTTGTTGAAGATATTGTGGAGAACTTTATCTTCGATATGGTTGGA
GGTTTGGTCAAGTCTGAACAGCTTGTTGCAAAAATCAAGTCTGGAGCACC
ACGAAACAAAGTTGAAGAAGTCGAACCAGTAATGGCTGCTACCTCCAAAG
ATGAGGCCGTCAAAGAACCTATTGAACCTTTGAAACCTCGCAACATTGAG
GACGTTATATCCGAGTCTCATGGTCCACAACTGGAGAATTATTTGGAAAG
TTCTGAACAAACAAGACCATTATCAGATGGTTCGGAGTCACCAGCAGATC
AAACAGTTTCTAACAGTGCACAGCAACAAGAAGAAGGATTGGTGGACAAC
GAAGTGGTGGAAAACGACCACGCGGACGAAGAATATTCATGTTCGTTCGA
AGAAGACGTTCCAACTCCTTCTGCATCTTCGTCTTCAAATGCGAAACTAC
GCAAGCAGGACAACGAGATCACACGCTTCTTGGACCAGCGATCTGAGCTT
AAAGCTAAAATCACTAATCTTGTAAGATCAACTGACGCTCATAAAATGGC
CAAAGAGCTAGCtgaacaaaaattaaaagaagaGAAAATGAGATCTTCCG
AACTTGAAGAGATTGTTAACGAATTACAGGAGGAGGCTGGACATTTGTCT
GGTAGTGGTGAAGATATCGCTGCACAACTGGAGGATGAAAAGCTGAAGAC
CTCCCAACTGGAAGATACTCTCACTAAATTGAGAGATCATAGTGAAGAAA
GCAGGATTTGTGTAGAACGGGTTCAACAAGAGCTTAAGGATGAGAAGTTA
AGGGCGGATGATGAGAAAGCAAAGGCGGTTGATGAAAAAAGAAGGGCGGA
CAATGAGAAGAAAAGGGCAGATAATCTTGAGGAAATGATGATGAAGATGC
AAGTAGAAATGGAAGTGTTGAGGGCCACTTCCACTAATTGCTCTTCGGAA
ACCGAATCCCCATCACCTCCAAAGTCTTTGGCAACTGTTGGTTTTGTTGA
AGATATTGTGGAGAACTTTATCTTCGATATGGTTGGAGGTTTGGTCAAGT
CTGAACAGCTTGTTGCAAAAATCAAGTCTGGAGCACCACGAAACAAAGTT
GAAGAAGTCGAACCAGTAATGGCTGCTACCTCCAAAGATGAGGCCGTCAA
AGAACCTATTGAACCTTTGAAACCTCGCAACATTGAGGACGTTATATCCG
AGTCTCATGGTCCACAACTGGAGAATTATTTGGAAAGTTCTGAACAAACA
AGACCATTATCAGATGGTTCGGAGTCACCAGCAGATCAAACAGTTTCTAA
CAGTGCACAGCAACAAGAAGAAGGATTGGTGGACAACGAAGTGGTGGAAA
ACGACCACGCGGACGAAGAATATTCATGTTCGTTCGAAGAAGACGTTCCA
ACTCCTTCTGCATCTTCGTCTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015662-exon-sc0000215-1491911889:277380..278247 | TCONS_00015662-exon-sc0000215-1491911889:277380..278247 | Clytia hemisphaerica | exon |
| TCONS_00015662-exon-sc0000215-1510915933:277380..278247 | TCONS_00015662-exon-sc0000215-1510915933:277380..278247 | Clytia hemisphaerica | exon |
| TCONS_00015662-exon-sc0000215-1575043694:277380..278247 | TCONS_00015662-exon-sc0000215-1575043694:277380..278247 | Clytia hemisphaerica | exon |
| TCONS_00015662-exon-sc0000215-1491911889:278592..278712 | TCONS_00015662-exon-sc0000215-1491911889:278592..278712 | Clytia hemisphaerica | exon |
| TCONS_00015662-exon-sc0000215-1510915933:278592..278712 | TCONS_00015662-exon-sc0000215-1510915933:278592..278712 | Clytia hemisphaerica | exon |
| TCONS_00015662-exon-sc0000215-1575043694:278592..278712 | TCONS_00015662-exon-sc0000215-1575043694:278592..278712 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000215 | supercontig | sc0000215:277380..278712 + |
Blast
The following BLAST results are available for this feature:
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