TCONS_00015665 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015665
Unique NameTCONS_00015665
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2345

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015665 ID=TCONS_00015665|Name=TCONS_00015665|organism=Clytia hemisphaerica|type=transcript|length=2345bp
gtcgtgcttcgactgaaaagtgtgccgaggttaggtaggaaatcctacct
aggtcacgtaacattacaatagaatttcagcgcttgaccaatcaaaagcc
TCACGGGTTTTCGAACACAATAGCAACAGAAGATCTTAAAGTACAACATC
TagatcaaaatgaaaaagaaaaagaatccaATACCGACTGTTTATCTCCA
ACCGTTTATTTATCGATCTAGTCTAGGTACAAACTTCTACTTTTTATCTA
GCCTTGACGCAACACTAATACTGAAGTCATCTTGGATGCGTTTGAAAAGG
CAGGAATTAAATCACGACTATCTTTTGAATATGCTATCACCAAGTTAAAC
CTTTCCAACGTCATTGTTGTATTGTTGTTATCTCTACCCCAAACATGTTA
ACCATCATCAGATAAAAATGTCTTGAAATTCTTGGAAGAAAATACCGAAC
ATTGCTAAGTTGAACTACACTCATCATACTCATACGAAAACTATTGAATA
ATTATCGAGATTGCTATTACGTGCCTGAAGGTCTCGTCCTTGCAGTTTCT
TGTAGGATCTGCTACTCTGACCTTTGGACACTTGGCAGCATGTCTAACTT
TCTGTCAAGACTTTGCATCAGCAAGCATTATTATTGAAAGTACAGTAACG
TCATTTTGTGATCACTTTTCCTTAGGAACCTGCTTTCATTTCTAATCCTT
ATCTAATCCGTCTCACATTAAGAGTATTTATTATCCTTTCGGTTTCTTAG
TTTCTCTAATCTCATCAGTCTAGCCTCCAAGTGGGCATGATAGAACGATA
GATCGATTTTGCTCCTTCAATCCAAAAGTGACGAATTCAGCTAATTCTGA
AATTTATTACGATATTGTAatgattttaccaaaaaatgaaaactgtcAAA
ATTCAGGCAATATTCATCCTTCATAGGAATTTTAATAAATGAGaaaaatt
ccactctttttcgTCATTATAATGTTCTACGATGCTATCtttcgcaaaaa
ttttcaattgaatgaaaaaaatgtctGATTTTTGAGTCACAAGACAATAA
CAGAATATTTCGTAATACAAAGATATCGTTTGTGTACATTTGAACTGAAC
TCTCCATTTAGAATGCCCAAGATTCATTTAGCCAAATAGTTGACTTGAGA
AGCAAGTAGAATGACGTTGCTAGATGAACTTTACAGATGACTGGTGTTCT
TGAGaaaaactatttaagaacaCAATGAAAAATGTGAAAGAAGTTAATTC
CCCTATGACGTCAAATACAAAAGTTTAAGTTGTAAAGCAAATGTGTGAAT
GTCATTATGCATCTTGTCATGACCAAAGTCTTCTATAGAACTAACTAGAT
CAGAACGACATAATGCTCTATGCGAGAATTATTTCACATGATTGCTACAA
ATACTTCCCGAACAGAGATTGCGAGAGGTGGTTTAAGCATCAAATTGACT
TCGTTCCTACTGAATCAATCTCAAGCAGTGGCGTATGGTGAAGTTTGATC
TCGGTGCTTGGACATTTTCAACCCCCTGTTTCGGAAGACAAAATATGTTA
GAGTAAaaacatccctgtgtcacagacccgctgggaccccagccccactg
gaaaactaAGCAAGAATTTCGTCGCTGGttggaaaatacccttgaatttc
agccccaatgggaaattgactttgatccCCACTcgatccccactcgaaat
tccatgtttaaaaattgctctccaaaaccatccccactggtgactgggtt
ttttaaccttggaacaatagaatttctatccccattaggatttcaatagg
aatttttatccccactaaggaaaaaagttgcctgTGTCACCTTCTTCAAA
CCTTTCAATCCTGATACTTAACAGACCCAAGTTATCCAAACAACCAGTAT
CACTACAACATTAACTGAAAAAAGTGACAGTTTTCAACTCAAGGCTTCAA
ACAAAATGAGATTCCAAAGTTTCAGACAAATTTAATAAAACACGAAACCC
CATCAAAGGATGCAAATTTTGAATGCGacaaaaagctgaaaatgataTTA
ACATTCTTCTATTTATTATTAAAGTTTATTGTCTTTCTCAAAACGAAAGC
ATTGATGGCTTTGTCGaagaaaagaattaaaaataccACACGGCAGTCTA
TTTTTAATCGAATATTCCTGCTTTTGTCATCAATTATACACAATTATTGA
CATTTGTATCTAATTTAAAACTTCCATGGAAATGACAATAGAACATGCAC
TGGTCGTTTACAAAACTtgatttgattggcttaaaagcTGCATGCTTTGC
TTACACCATTAACATACTTATGGAATAACAAAGACTTTAATTAAG
Run BLAST on NCBI

transcript from alignment at sc0000215:417190..419587+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015665 ID=TCONS_00015665|Name=TCONS_00015665|organism=Clytia hemisphaerica|type=transcript|length=2398bp|location=Sequence derived from alignment at sc0000215:417190..419587+ (Clytia hemisphaerica)
gtcgtgcttcgactgaaaagtgtgccgaggttaggtaggaaatcctacct
aggtcacgtaacattacaatagaatttcagcgcttgaccaatcaaaagcc
TCACGGGTTTTCGAACACAATAGCAACAGAAGATCTTAAAGTACAACATC
TagatcaaaatgaaaaagaaaaagaatccaATACCGACTGTTTATCTCCA
ACCGTTTATTTATCGATCTAGTCTAGGTACAAACTTCTACTTTTTATCTA
GCCTTGACGCAACACTAATACTGAAGTCATCTTGGATGCGTTTGAAAAGG
CAGGAATTAAATCACGACTATCTTTTGAATATGCTATCACCAAGTTAAAC
CTTTCCAACGTCATTGTTGTATTGTTGTTATCTCTACCCCAAACATGTTA
ACCATCATCAGATAAAAATGTCTTGAAATTCTTGGAAGAAAATACCGAAC
ATTGCTAAGTTGAACTACACTCATCATACTCATACGAAAACTATTGAATA
ATTATCGAGATTGCTATTACGTGCCTGAAGGTCTCGTCCTTGCAGTTTCT
TGTAGGATCTGCTACTCTGACCTTTGGACACTTGGCAGCATGTCTAACTT
TCTGTCAAGACTTTGCATCAGCAAGCATTATTATTGAAAGTACAGTAACG
TCATTTTGTGATCACTTTTCCTTAGGAACCTGCTTTCATTTCTAATCCTT
ATCTAATCCGTCTCACATTAAGAGTATTTATTATCCTTTCGGTTTCTTAG
TTTCTCTAATCTCATCAGTCTAGCCTCCAAGTGGGCATGATAGAACGATA
GATCGATTTTGCTCCTTCAATCCAAAAGTGACGAATTCAGCTAATTCTGA
AATTTATTACGATATTGTAatgattttaccaaaaaatgaaaactgtcAAA
ATTCAGGCAATATTCATCCTTCATAGGAATTTTAATAAATGAGaaaaatt
ccactctttttcgTCATTATAATGTTCTACGATGCTATCtttcgcaaaaa
ttttcaattgaatgaaaaaaatgtctGATTTTTGAGTCACAAGACAATAA
CAGAATATTTCGTAATACAAAGATATCGTTTGTGTACATTTGAACTGAAC
TCTCCATTTAGAATGCCCAAGATTCATTTAGCCAAATAGTTGACTTGAGA
AGCAATNCCCAAGATTTATTTAGCCAATGAAGATTAGTTGACTTGAGAAG
CAATTACAGTAGAATGACGTTGCTAGATGAACTTTACAGATGACTGGTGT
TCTTGAGaaaaactatttaagaacaCAATGAAAAATGTGAAAGAAGTTAA
TTCCCCTATGACGTCAAATACAAAAGTTTAAGTTGTAAAGCAAATGTGTG
AATGTCATTATGCATCTTGTCATGACCAAAGTCTTCTATAGAACTAACTA
GATCAGAACGACATAATGCTCTATGCGAGAATTATTTCACATGATTGCTA
CAAATACTTCCCGAACAGAGATTGCGAGAGGTGGTTTAAGCATCAAATTG
ACTTCGTTCCTACTGAATCAATCTCAAGCAGTGGCGTATGGTGAAGTTTG
ATCTCGGTGCTTGGACATTTTCAACCCCCTGTTTCGGAAGACAAAATATG
TTAGAGTAAaaacatccctgtgtcacagacccgctgggaccccagcccca
ctggaaaactaAGCAAGAATTTCGTCGCTGGttggaaaatacccttgaat
ttcagccccaatgggaaattgactttgatccCCACTcgatccccactcga
aattccatgtttaaaaattgctctccaaaaccatccccactggtgactgg
gttttttaaccttggaacaatagaatttctatccccattaggatttcaat
aggaatttttatccccactaaggaaaaaagttgcctgTGTCACCTTCTTC
AAACCTTTCAATCCTGATACTTAACAGACCCAAGTTATCCAAACAACCAG
TATCACTACAACATTAACTGAAAAAAGTGACAGTTTTCAACTCAAGGCTT
CAAACAAAATGAGATTCCAAAGTTTCAGACAAATTTAATAAAACACGAAA
CCCCATCAAAGGATGCAAATTTTGAATGCGacaaaaagctgaaaatgata
TTAACATTCTTCTATTTATTATTAAAGTTTATTGTCTTTCTCAAAACGAA
AGCATTGATGGCTTTGTCGaagaaaagaattaaaaataccACACGGCAGT
CTATTTTTAATCGAATATTCCTGCTTTTGTCATCAATTATACACAATTAT
TGACATTTGTATCTAATTTAAAACTTCCATGGAAATGACAATAGAACATG
CACTGGTCGTTTACAAAACTtgatttgattggcttaaaagcTGCATGCTT
TGCTTACACCATTAACATACTTATGGAATAACAAAGACTTTAATTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008741XLOC_008741Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015665-exon-sc0000215-1491911889:417190..418343TCONS_00015665-exon-sc0000215-1491911889:417190..418343Clytia hemisphaericaexon
TCONS_00015665-exon-sc0000215-1510915933:417190..418343TCONS_00015665-exon-sc0000215-1510915933:417190..418343Clytia hemisphaericaexon
TCONS_00015665-exon-sc0000215-1575043694:417190..418343TCONS_00015665-exon-sc0000215-1575043694:417190..418343Clytia hemisphaericaexon
TCONS_00015665-exon-sc0000215-1491911889:418397..419587TCONS_00015665-exon-sc0000215-1491911889:418397..419587Clytia hemisphaericaexon
TCONS_00015665-exon-sc0000215-1510915933:418397..419587TCONS_00015665-exon-sc0000215-1510915933:418397..419587Clytia hemisphaericaexon
TCONS_00015665-exon-sc0000215-1575043694:418397..419587TCONS_00015665-exon-sc0000215-1575043694:418397..419587Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:417190..419587 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.257762	0.180795	0.121164	0.119798	0.0489469	0.073814	0.262074	0.179338	0.177584	1.02909	0.175161	0.743383	2.97893	5.00593	1.87116	0.755483	0.338522	0.604744	0.299579	0.66716	0.1633	0.310321	0.0574954	0.0871337	0.0362726	0.129421	3.23585	2.8329	0.074529	0.0954327
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015665 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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