TCONS_00015666 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015666
Unique NameTCONS_00015666
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length380

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015666 ID=TCONS_00015666|Name=TCONS_00015666|organism=Clytia hemisphaerica|type=transcript|length=380bp
gaaaaaatcattcgagtataaaaaatttaatcacgcttcaaaattaaatc
aagcatgtttttaaaatttctggtagttttttttccttattttgtgTGGT
TTTACGACGTTCTGTGCAGTTAGTGCGAAAGAGGCATCAGCATCTACCGT
GGCATTTGAATGTGAACCACCTTGCAAACATGGAAATTGCACCGATTCTA
ATACTTGCACCTGTGCTGTGGGTTATATTGGAAAGATATGTGATGAAGGT
GAAGATGACGAAATGAATGAAATAGTTGCCACCGCAAAAATAGTGGTCGG
TGTGGTATTTGCAGTTATAATTCTTCTATGTATCGGATGCACCGCAAGAT
TTATTTACAAAAGAACGGACTGCCgtaaaa
Run BLAST on NCBI

transcript from alignment at sc0000215:428055..428978+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015666 ID=TCONS_00015666|Name=TCONS_00015666|organism=Clytia hemisphaerica|type=transcript|length=924bp|location=Sequence derived from alignment at sc0000215:428055..428978+ (Clytia hemisphaerica)
gaaaaaatcattcgagtataaaaaatttaatcacgcttcaaaattaaatc
aagcatgtttttaaaatttctggtagttttttttccttattttgtgTGGT
TTTACGACGTTCTGTGCAGTTAGTGCGAAAGAGGCATCAGCATCTACCGT
GGCATTTGAATGTGAACCACCTTGCAAACATGGAAATTGCACCGATTCTA
ATACTTGCACCTGTGCTGTGGGTTATATTGGAAAGATATGTGATGAAGGT
ATTTTTATggttttaatttcttttcagTGCCATGGTTTCAAATAGACCTT
TGGGAAGGTGGAGAATGCAGACCTTTAGAAAATGTATTTCCTCTGGAGTA
TCTCTTCTGCATTCGAAGCCAACCAAATTGCACTGCTTGACTTGAATGAT
TGAGATGTCACTTAAATCCCTAATAAAAATTGCTTTGTATtacctcgaat
aaacgcccgagACGTACGTCATTTTGGAGGGGATTGTTCGAGGCgggcgt
ttaaaagaaagggaccttaaatatatattttttgagagaaaattacACCT
CGTTTAGCTATTTCTTCAAGATTTATGTGAATAAGAAATCCTGGTTGCAG
ACTTTTTATTGTGTCAAGGTTGCTTTTATTAGCAAATATATCGCTCACTT
CGTAAACTCCCTATAAAGCCACAATTCCTTTACAGGGTGTTTATTTGAAG
GGAGCATATTGTTGAATTcaagaaattttctttgaatttcaaGCTTATTT
TCTAGAGGCTAATACTATCAATCTCTCTTATATCTTTTCTAGGTGAAGAT
GACGAAATGAATGAAATAGTTGCCACCGCAAAAATAGTGGTCGGTGTGGT
ATTTGCAGTTATAATTCTTCTATGTATCGGATGCACCGCAAGATTTATTT
ACAAAAGAACGGACTGCCgtaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008742XLOC_008742Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015666-exon-sc0000215-1491911889:428055..428302TCONS_00015666-exon-sc0000215-1491911889:428055..428302Clytia hemisphaericaexon
TCONS_00015666-exon-sc0000215-1510915933:428055..428302TCONS_00015666-exon-sc0000215-1510915933:428055..428302Clytia hemisphaericaexon
TCONS_00015666-exon-sc0000215-1575043694:428055..428302TCONS_00015666-exon-sc0000215-1575043694:428055..428302Clytia hemisphaericaexon
TCONS_00015666-exon-sc0000215-1491911889:428847..428978TCONS_00015666-exon-sc0000215-1491911889:428847..428978Clytia hemisphaericaexon
TCONS_00015666-exon-sc0000215-1510915933:428847..428978TCONS_00015666-exon-sc0000215-1510915933:428847..428978Clytia hemisphaericaexon
TCONS_00015666-exon-sc0000215-1575043694:428847..428978TCONS_00015666-exon-sc0000215-1575043694:428847..428978Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:428055..428978 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.207472	0	0.234911	0.459647	0	0.221092	0	0	0	0	0	0	0.827899	0.859782	0	0	0.311497	0	5.51369	4.38495	0.200596	0	0	0.216271	0.445507	0	0	0	0.230278	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015666 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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