TCONS_00015676 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015676
Unique NameTCONS_00015676
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1407

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015676 ID=TCONS_00015676|Name=TCONS_00015676|organism=Clytia hemisphaerica|type=transcript|length=1407bp
ACAAATAAAAAGATGAGTATAATCGATCCTTTGGCTGCCATTTTGCTTCT
CAACATCACTGGCTTCATTGTCATCTTATTCAATGGTTTCTCTCTATACG
TTTTCTTCTCACAACGAAAACACAAACGAATCTCAAACATACCCATGATC
TGGATCCTCACAGCAAATGTTCTGATTGGTGCATTTCCGTTCCCAGTCTA
CGGATTGAAAAAGTACAATTTTACAGACCCGTATACACTTGGTCGCATAT
GCGATGCGTGGAGATATACTTATTTTAGTGGTGTACATTTGGCAATGTGT
AGTTTACTACTGATGACCGTACAGAAGATATTGATTCTTAGCTTCCCGTT
GAGATACCAAAGAATTATTACCGGTTTTCGCACCAACCTCATTTTCGGCG
TCGCATGGCTGTTTCTCCTGATCTTCGATATGATTCCATTTTTTCCTTTC
TCAGAGCACGATGACGAGTATTGtcattataaaatcaaaaaagactgGGC
ACTAGCTATGAACATTATCACCATGGCAATACCGTTACCTGTCATTATCG
GTTGCTATGGTTACATGTTGTATTTGGCTTTCGGACAGTATGTCCGGATT
CAAAAGACTACGAGCATCTCTCATAATGGctcatcaaaaaagaagaaacc
gAACATGTTAAGCGAGGTCAAAGCAACACGAAAGGTAGCTCTTATCATTG
GAGCATACATTCTCTGTTGGACCCCATCTACATTATATTACCTTATTGAA
TGGCTCTGTCCACATTGTTATCCGAAAAATTACGAGCCGCATAAAACATG
GATTCGGTTTTTCTTCAAACTCTTGGTGATGATGCATGCTTTGGTAACAC
CTATCATCTTTTGCTGCCAAAGCAGGGAGTTCCAGAAAGACGCATCACGA
TCTATGAGGAGATTCAGCCGTGCAACCTTTGATGGAACGAAACATAGTAA
TACAACTTATGCTACAGACTCTCATTGAGCAAGATTACCATGTGATCATC
TGTTCTAGAATGTCTTTCTAATCCCATAGCTCGCTTTAAGAGCTGAAAGG
AGAGAAAACTAGATTTTGTGATTCTGGTTGCTGGACAACAAATTCAGGAT
TGAAAATAGTGATTCTGTCTTTTTCTATCATTCCTAAATATACTATGGAA
CTGATGACAAATAATATTTAAGTCATAATAAACATAAAAGAAGCATTTCA
GTGAACTTACGTCTTTTTAATAGTCACCATCGGTCAATAATATTATTGCT
GGACTGAAGAGTGGTATTTTCCAAGAATAAGTTCATCCGTTAGCTCATGT
GtataaagtttcattttttgcattttttttattgaaataaataaaGATTG
AATGATTAACAAATGAATAactttcaatttctgaaaaCAAGAATAATTGA
GACAAGA
Run BLAST on NCBI

protein sequence of TCONS_00015676-protein

>TCONS_00015676-protein ID=TCONS_00015676-protein|Name=TCONS_00015676-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
TNKKMSIIDPLAAILLLNITGFIVILFNGFSLYVFFSQRKHKRISNIPMI
WILTANVLIGAFPFPVYGLKKYNFTDPYTLGRICDAWRYTYFSGVHLAMC
SLLLMTVQKILILSFPLRYQRIITGFRTNLIFGVAWLFLLIFDMIPFFPF
SEHDDEYCHYKIKKDWALAMNIITMAIPLPVIIGCYGYMLYLAFGQYVRI
QKTTSISHNGSSKKKKPNMLSEVKATRKVALIIGAYILCWTPSTLYYLIE
WLCPHCYPKNYEPHKTWIRFFFKLLVMMHALVTPIIFCCQSREFQKDASR
SMRRFSRATFDGTKHSNTTYATDSH
Run BLAST on NCBI

transcript from alignment at sc0000215:181257..182735-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015676 ID=TCONS_00015676|Name=TCONS_00015676|organism=Clytia hemisphaerica|type=transcript|length=1479bp|location=Sequence derived from alignment at sc0000215:181257..182735- (Clytia hemisphaerica)
ACAAATAAAAAGATGAGTATAATCGATCCTTTGGCTGCCATTTTGCTTCT
CAACATCACTGGCTTCATTGTCATCTTATTCAATGGTTTCTCTCTATACG
TTTTCTTCTCACAACGAAAACACAAACGAATCTCAAACATACCCATGATC
TGGATCCTCACAGCAAATGTTCTGATTGGTGCATTTCCGTTCCCAGTCTA
CGGATTGAAAAAGTACAATTTTACAGACCCGTATACACTTGGTCGCATAT
GCGATGCGTGGAGATATACTTATTTTAGTGGTGTACATTTGGCAATGTGT
AGTTTACTACTGATGACCGTACAGAAGATATTGATTCTTAGCTTCCCGTT
GAGATACCAAAGAATTATTACCGGTTTTCGCACCAACCTCATTTTCGGCG
TCGCATGGCTGTTTCTCCTGATCTTCGATATGATTCCATTTTTTCCTTTC
TCAGAGCACGATGACGAGTATTGTCATTATAAAATCAAAAAAGACTGGGC
ACTAGCTATGAACATTATCACCATGGCAATACCGTTACCTGTCATTATCG
GTTGCTATGGTTACATGTTGTATTTGGCTTTCGGACAGTATGTCCGGATT
CAAAAGACTACGAGCATCTCTCATAATGGCTCATCAAAAAAGAAGAAACC
GAACATGTTAAGCGAGGTCAAAGCAACACGAAAGGTAGCTCTTATCATTG
GAGCATACATTCTCTGTTGGACCCCATCTACATTATATTACCTCATTGAA
TGGCTCTGTCCACACTGTTATCCGAAAAATTACGAGCCGCATANCCCATC
TACATTATATTACCTTATTGAATGGCTCTGTCCACATTGTTATCCGAAAA
ATTACGAGCCGCATAAAACATGGATTCGGTTTTTCTTCAAACTCTTGGTG
ATGATGCATGCTTTGGTAACACCTATCATCTTTTGCTGCCAAAGCAGGGA
GTTCCAGAAAGACGCATCACGATCTATGAGGAGATTCAGCCGTGCAACCT
TTGATGGAACGAAACATAGTAATACAACTTATGCTACAGACTCTCATTGA
GCAAGATTACCATGTGATCATCTGTTCTAGAATGTCTTTCTAATCCCATA
GCTCGCTTTAAGAGCTGAAAGGAGAGAAAACTAGATTTTGTGATTCTGGT
TGCTGGACAACAAATTCAGGATTGAAAATAGTGATTCTGTCTTTTTCTAT
CATTCCTAAATATACTATGGAACTGATGACAAATAATATTTAAGTCATAA
TAAACATAAAAGAAGCATTTCAGTGAACTTACGTCTTTTTAATAGTCACC
ATCGGTCAATAATATTATTGCTGGACTGAAGAGTGGTATTTTCCAAGAAT
AAGTTCATCCGTTAGCTCATGTGTATAAAGTTTCATTTTTTGCATTTTTT
TTATTGAAATAAATAAAGATTGAATGATTAACAAATGAATAACTTTCAAT
TTCTGAAAACAAGAATAATTGAGACAAGA

Coding sequence (CDS) from alignment at sc0000215:181257..182735-

>TCONS_00015676 ID=TCONS_00015676|Name=TCONS_00015676|organism=Clytia hemisphaerica|type=CDS|length=1956bp|location=Sequence derived from alignment at sc0000215:181257..182735- (Clytia hemisphaerica)
ATTATATTACCTTATTGAATGGCTCTGTCCACATTGTTATCCGAAAAATT
ACGAGCCGCATAAAACATGGATTCGGTTTTTCTTCAAACTCTTGGTGATG
ATGCATGCTTTGGTAACACCTATCATCTTTTGCTGCCAAAGCAGGGAGTT
CCAGAAAGACGCATCACGATCTATGAGGAGATTCAGCCGTGCAACCTTTG
ATGGAACGAAACATAGTAATACAACTTATGCTACAGACTCTCATTGAACA
AATAAAAAGATGAGTATAATCGATCCTTTGGCTGCCATTTTGCTTCTCAA
CATCACTGGCTTCATTGTCATCTTATTCAATGGTTTCTCTCTATACGTTT
TCTTCTCACAACGAAAACACAAACGAATCTCAAACATACCCATGATCTGG
ATCCTCACAGCAAATGTTCTGATTGGTGCATTTCCGTTCCCAGTCTACGG
ATTGAAAAAGTACAATTTTACAGACCCGTATACACTTGGTCGCATATGCG
ATGCGTGGAGATATACTTATTTTAGTGGTGTACATTTGGCAATGTGTAGT
TTACTACTGATGACCGTACAGAAGATATTGATTCTTAGCTTCCCGTTGAG
ATACCAAAGAATTATTACCGGTTTTCGCACCAACCTCATTTTCGGCGTCG
CATGGCTGTTTCTCCTGATCTTCGATATGATTCCATTTTTTCCTTTCTCA
GAGCACGATGACGAGTATTGTCATTATAAAATCAAAAAAGACTGGGCACT
AGCTATGAACATTATCACCATGGCAATACCGTTACCTGTCATTATCGGTT
GCTATGGTTACATGTTGTATTTGGCTTTCGGACAGTATGTCCGGATTCAA
AAGACTACGAGCATCTCTCATAATGGCTCATCAAAAAAGAAGAAACCGAA
CATGTTAAGCGAGGTCAAAGCAACACGAAAGGTAGCTCTTATCATTGGAG
CATACATTCTCTGTTGGACCCCATCTACATTATATTACCTTATTGAATGG
CTCTGTCCACATTGTTATCCGAAAAATTACGAGCCGCATAAAACATGGAT
TCGGTTTTTCTTCAAACTCTTGGTGATGATGCATGCTTTGGTAACACCTA
TCATCTTTTGCTGCCAAAGCAGGGAGTTCCAGAAAGACGCATCACGATCT
ATGAGGAGATTCAGCCGTGCAACCTTTGATGGAACGAAACATAGTAATAC
AACTTATGCTACAGACTCTCATTGAACAAATAAAAAGATGAGTATAATCG
ATCCTTTGGCTGCCATTTTGCTTCTCAACATCACTGGCTTCATTGTCATC
TTATTCAATGGTTTCTCTCTATACGTTTTCTTCTCACAACGAAAACACAA
ACGAATCTCAAACATACCCATGATCTGGATCCTCACAGCAAATGTTCTGA
TTGGTGCATTTCCGTTCCCAGTCTACGGATTGAAAAAGTACAATTTTACA
GACCCGTATACACTTGGTCGCATATGCGATGCGTGGAGATATACTTATTT
TAGTGGTGTACATTTGGCAATGTGTAGTTTACTACTGATGACCGTACAGA
AGATATTGATTCTTAGCTTCCCGTTGAGATACCAAAGAATTATTACCGGT
TTTCGCACCAACCTCATTTTCGGCGTCGCATGGCTGTTTCTCCTGATCTT
CGATATGATTCCATTTTTTCCTTTCTCAGAGCACGATGACGAGTATTGTC
ATTATAAAATCAAAAAAGACTGGGCACTAGCTATGAACATTATCACCATG
GCAATACCGTTACCTGTCATTATCGGTTGCTATGGTTACATGTTGTATTT
GGCTTTCGGACAGTATGTCCGGATTCAAAAGACTACGAGCATCTCTCATA
ATGGCTCATCAAAAAAGAAGAAACCGAACATGTTAAGCGAGGTCAAAGCA
ACACGAAAGGTAGCTCTTATCATTGGAGCATACATTCTCTGTTGGACCCC
ATCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008751XLOC_008751Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015676-proteinTCONS_00015676-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015676-exon-sc0000215-1575043694:182005..182735TCONS_00015676-exon-sc0000215-1575043694:182005..182735Clytia hemisphaericaexon
TCONS_00015676-exon-sc0000215-1575043694:181257..181932TCONS_00015676-exon-sc0000215-1575043694:181257..181932Clytia hemisphaericaexon
TCONS_00015676-exon-sc0000215-1510915933:182005..182735TCONS_00015676-exon-sc0000215-1510915933:182005..182735Clytia hemisphaericaexon
TCONS_00015676-exon-sc0000215-1510915933:181257..181932TCONS_00015676-exon-sc0000215-1510915933:181257..181932Clytia hemisphaericaexon
TCONS_00015676-exon-sc0000215-1491911889:182005..182735TCONS_00015676-exon-sc0000215-1491911889:182005..182735Clytia hemisphaericaexon
TCONS_00015676-exon-sc0000215-1491911889:181257..181932TCONS_00015676-exon-sc0000215-1491911889:181257..181932Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:181257..182735 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0288785	0.167653	0.262436	0.0798727	0	0.799547	0.499017	0.773613	1.6692	0.930096	0.808637	4.29361	3.9067	3.06049	3.51897	2.0675	3.3268	5.35168	6.22605	2.69147	2.51388	2.07125	3.14874	2.32106	3.94435	0.203034	0.0866735	0	0.0334887
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015676 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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