TCONS_00015695 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015695
Unique NameTCONS_00015695
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1499

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015695 ID=TCONS_00015695|Name=TCONS_00015695|organism=Clytia hemisphaerica|type=transcript|length=1499bp
GTTTTATTTCAATCACATATCTTAAAACGATTTTATTCATGGAAAAAGAC
TTGTCTGAAGGCTAGTATATACTATCATGTAGAGAACATACTCGACTTGG
TTTTTGGAAGGCTCCCTCAACAGATGGAATGACTAAAAAGGAGAAGGCAA
TCGAAAATATCGATGCCTTCACACATTTTGTAGCTGGTTGGGTCTCAGGT
TGTGCGGGCGTGTTGGTGAGTCATCCTTTGGACACAGTGAAAGTTCGTTT
ACAAACGCAAGGCGTATCTGCAATACAACAACAGTATCGGGGTACATGGC
ATTGTCTATCTGAAAccatcaaaaatgaaaagGTTTATGGGTTGTTCAAA
GGTATGTCGTCACCGCTCCTGGGAACTGCTCTTTGGAATGCTGTTATCTT
CGGTACCTATGGCAACACCATACGCTGGTTGGCTGGTGATAGCCTAGAAG
AACAGCATCGGATGAGTAATGTTGTAATCGCTAGTCTAGCGTCAGGTTTC
ACTCAAACTTTTGTTATTACACCTCTGGAgctcaccaaaacgaggctaca
AATTCAAACATCGcagaaaaatcaagtttataAAGgtttgattgattgtt
gtCGACAGATCTATCGCCAACAAGGTTTTTTCGGACTCTTCAAAGGGTTC
AATGCAACGTTCATTCGAGATGCAATCGGTTTCACTGCGTTCTTTGGAAT
TTTCGAACAATTTTCACGATGGATATCTAAAGAAGGGCCACCGTATCGTG
ATATTACCATAGTTGGGCACGTTGTGGCCGGAGGGCTTACGGGTGCCATA
TCATGGGGATGCGCTTTTCccgctgacgtcatcaaatgtCGGATTCAAGT
AGATTACGAGGGGCGATATAACGGTTTTATTGACTGTGTTCGCAAATCTT
ATAAAGAGGAAGGTCCGGCGCTTTTCCGGCGTGGTTTTTGGCCCTGTGTT
TTGAGAGGGTTTCCAATGAACGCAGCAATCTTTAGTATTTATCATTATAT
GATCCGTGTTTATGAAGACCACGATATGGCAGATAGGATTGTAACAAAGT
TTTTGTACGTGGATTGATTGAATGCAATAGTGTGACCTTTTTGAATGTTA
ACTTCATGTTCATGCATACGCAATACATCTTCGAAAACTTTTAAGGCCTG
GATCCGCCATAACTACtgaaacacccctgtatcacagactggaaaatgaa
ctttgatttcatatcccaaaattcatttcaaaattcaattggACGAAAAC
TTGCATTccgaaaccatccccactggaacaatagaatttctatcctcatt
gggatttcgatataaatttttatccccactgagggaaaacttccaccggg
tctgtgagacagggatgaaATGAGAGGCCCTCAGACTTATCATAACTTGA
AATATTAAATAAGCAAGTTAGACGTCGAAAAGTGAATCcatttcttaaaa
tttgttcattttaatTTGAATACATCTTTTGGACGTATATCAAGAAAAT
Run BLAST on NCBI

transcript from alignment at sc0000215:344624..348415-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015695 ID=TCONS_00015695|Name=TCONS_00015695|organism=Clytia hemisphaerica|type=transcript|length=3792bp|location=Sequence derived from alignment at sc0000215:344624..348415- (Clytia hemisphaerica)
GTTTTATTTCAATCACATATCTTAAAACGATTTTATTCATGGAAAAAGGT
TTTGAGAGCTAAAAACTATTTTAAGACACAAATTTTTAGCTATATGTAGT
TTTGCTGAAACATAATGTGATGTTTAATGTGCGTTTTTTTGTCTTAAATT
ATATTTTAAAGTTTTTACTGTTTATATACGTAAAAAGAGAAATGCTGAGA
TTATCAACCACAAAAGTATGATAGGTATTTTTAATTGGAATGCCTTCAAT
AATTTTTAAACTGTTTTTCCATTTAGACTTGTCTGAAGGCTAGTATATAC
TATCATGTAGAGAACATACTCGACTTGGTTTTTGGAAGGCTCCCTCAACA
GATGGAATGACTAAAAAGGAGAAGGCAATCGAAAATATCGATGCCTTCAC
ACATTTTGTAGCTGGTTGGGTCTCAGGTACTTATACTTATACACTTTTGG
AGATCAAGAAATTAATGATGAAAAAAAAATTATATTATTAGACTTTGTTT
ACACCTCTGTATCAAAGGCAGCTAATTTCGTGACTTGAAGTCGACCAATA
GAAATTTGTTTTCGTTTTAAAACAATTTGGAACGTGTGACTACTGTTTCA
GCAATTGNTTTTAACCAAATTGAAATTTGTTTTCGTTTTAATACAATTTG
GAGCGTGTGACTACTGTTTCAGCAATTGCTATTATTCATCATAAGTAGGT
CTATTAAGCCAAGTAGTCTGTCTGCCTGCCTATAATAGAGCTATTCTAGG
TTTGATACCCTATTTTTACTAATTTGAAAATTTGCAGGCAGGCAGACTAC
TTGGCTTAATAGACCTACTTATGATAGTTATAATTATCACTATTAATTAT
AGATACTTATGATAGGTCAAGACCTACAATTTGCTTAAAATTTTACACTA
AGATTTATTTTAAAGAGGACTTTGCACCTTTGGATGATAATCAGAGAGTA
AATCCAATATTTTGTTGTCACAGGTTGTGCGGGCGTGTTGGTGAGTCATC
CTTTGGACACAGTGAAAGTTCGTTTACAAACGCAAGGCGTATCTGCAATA
CAACAACAGTATCGGGGTACATGGCATTGTCTATCTGAAACCATCAAAAA
TGAAAAGGTAGTTCTCATCATTCTTCACTTCGATTATGTAAAAACTTTTT
TTCTGATTGCATTCAAAAATAGAACCCCAAAAAGTGAGGTTTTCAATCAC
AGCCACTTTTTAGCCCACAACGTTGATATTCTTGTGGCTGCTGTGTAGTA
CAAAATTCTATAAAATAAGGAAATTGACGAGCTTTCCAAAAATGTGGCTC
CCTTTGAAGTTGAGTGATTCAGTCTTGAAATATAAGATGGCAAAGTGAGG
GCAGGTTTTGTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTGGTTCC
ATTTTTGATATTTTGTGGATAAACCCTTTTGCTACGAGTTTCATCTGACT
GAAAAATATGCATTCCTCTTGTTGTATTTTTCTTGGGCTAAATTAAAGCC
CCTTTTGTACTTTCTACTCATTCTGTTTAGGTTTATGGGTTGTTCAAAGG
TATGTCGTCACCGCTCCTGGGAACTGCTCTTTGGAATGCTGTTATCTTCG
GTACCTATGGCAACACCATACGCTGGTTGGCTGGTGATAGCCTAGAAGAA
CAGCATCGGATGAGTAATGTTGTAATCGCTAGTCTAGCGTCAGGTTTCAC
TCAAACTTTTGTTATTACACCTCTGGAGCTCACCAAAACGAGGCTACAAA
TTCAAACATCGCAGAAAAATCAAGTTTATAAAGGTTACTTTTTATTGAAT
TATGGACACTTTAATTTGTTGACAATTTTTATGTAGTCTTTTTGCTATAT
TAAAAAGCTATATATCATATGCCATTGGAAAGATTTCCCAGAAGATAGAA
TGATATAAAAGATTAAAGAATTTTGCAAAGTTGACAAATGAAGAAGAAAA
GGGAAGATGAAAAAATGAAGTTTTTTCCTATTTTTCTACTGGTACCAAAA
TCATTACATCAGACCTTTCAGAATTATTGAACCGTGCTGATTTCAAATCC
GTATTTCTTGTATCTTCCTTAGATAAAAAGTTACAGCCCTATGAAGTAGG
CCTAAAACGGACAAAAATGACCAAAAATTAACACATTTTACAGTGCTGTT
TTTTATTTGTGTTTTTTATTATTTTCAGGTTTGATTGATTGTTGTCGACA
GATCTATCGCCAACAAGGTTTTTTCGGACTCTTCAAAGGGTTCAATGCAA
CGTTCATTCGAGATGCAATCGGTTTCACTGCGTTCTTTGGAATTTTCGAA
CAATTTTCACGATGGATATCTAAAGAAGGGCCACCGTATCGTGATATTAC
CATAGTTGGGCACGTTGTGGCCGGAGGGCTTACGGGTGCCATATCATGGG
GATGCGCTTTTCCCGCTGACGTCATCAAATGTCGGATTCAAGTAGATTAC
GAGGGGCGATATAACGGTTTTATTGACTGTGTTCGCAAATCTTATAAAGA
GGAAGGTCCGGCGCTTTTCCGGCGTGGTTTTTGGCCCTGTGTTTTGAGAG
GGTTTCCAATGAACGCAGCAATCTTTAGTATTTATCATTATATGATCCGT
GTTTATGAAGACCACGATATGGCAGATAGGATTGTAACAAAGTTTTTGTA
CGTGGATTGATTGAATGCAATAGTGTGACCTTTTTGAATGTTAACTTCAT
GTTCATGCATACGCAATACATCTTCGAAAACTTTTAAGGCCTGGATCCGC
CATAACTACTGAAACACCCCTGTATCACAGACTGGAAAATGAACTTTGAT
TTCATATCCCAAAATTCATTTCAAAATTCAATTGGACGAAAACTTGCATT
CCGAAACCATCCCCACTGGAACAATAGAATTTCTATCCTCATTGGGATTT
CGATATAAATTTTTATCCCCACTGAGGGAAAACTTCCACCGGGTCTGTGA
GACAGGGATGAAATGAGAGGCCCTCAGACTTATCATAACTTGAAATATTA
AATAAGCAAGTTAGACGTCGAAAAGTGAATCCATTTCTTAAAATTTGTTC
ATTTTAATTTGAATACATCTTTTGGACGTATATCAAGAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008756XLOC_008756Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015695-exon-sc0000215-1575043694:348368..348415TCONS_00015695-exon-sc0000215-1575043694:348368..348415Clytia hemisphaericaexon
TCONS_00015695-exon-sc0000215-1575043694:347990..348139TCONS_00015695-exon-sc0000215-1575043694:347990..348139Clytia hemisphaericaexon
TCONS_00015695-exon-sc0000215-1575043694:347309..347442TCONS_00015695-exon-sc0000215-1575043694:347309..347442Clytia hemisphaericaexon
TCONS_00015695-exon-sc0000215-1575043694:345933..346185TCONS_00015695-exon-sc0000215-1575043694:345933..346185Clytia hemisphaericaexon
TCONS_00015695-exon-sc0000215-1575043694:344624..345537TCONS_00015695-exon-sc0000215-1575043694:344624..345537Clytia hemisphaericaexon
TCONS_00015695-exon-sc0000215-1510915933:348368..348415TCONS_00015695-exon-sc0000215-1510915933:348368..348415Clytia hemisphaericaexon
TCONS_00015695-exon-sc0000215-1510915933:347990..348139TCONS_00015695-exon-sc0000215-1510915933:347990..348139Clytia hemisphaericaexon
TCONS_00015695-exon-sc0000215-1510915933:347309..347442TCONS_00015695-exon-sc0000215-1510915933:347309..347442Clytia hemisphaericaexon
TCONS_00015695-exon-sc0000215-1510915933:345933..346185TCONS_00015695-exon-sc0000215-1510915933:345933..346185Clytia hemisphaericaexon
TCONS_00015695-exon-sc0000215-1510915933:344624..345537TCONS_00015695-exon-sc0000215-1510915933:344624..345537Clytia hemisphaericaexon
TCONS_00015695-exon-sc0000215-1491911889:348368..348415TCONS_00015695-exon-sc0000215-1491911889:348368..348415Clytia hemisphaericaexon
TCONS_00015695-exon-sc0000215-1491911889:347990..348139TCONS_00015695-exon-sc0000215-1491911889:347990..348139Clytia hemisphaericaexon
TCONS_00015695-exon-sc0000215-1491911889:347309..347442TCONS_00015695-exon-sc0000215-1491911889:347309..347442Clytia hemisphaericaexon
TCONS_00015695-exon-sc0000215-1491911889:345933..346185TCONS_00015695-exon-sc0000215-1491911889:345933..346185Clytia hemisphaericaexon
TCONS_00015695-exon-sc0000215-1491911889:344624..345537TCONS_00015695-exon-sc0000215-1491911889:344624..345537Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:344624..348415 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.962574	0	1.83301e-06	0.853019	3.48909	4.44489	30.2309	30.9734	17.5355	16.7983	20.4627	20.7662	19.5635	16.277	32.882	38.7531	34.7814	19.3175	20.6793	18.5244	13.9267	13.4288	11.3215	8.40827	19.0456	14.5802	3.56517	4.418	35.593	25.3413
Blast
[Close]
BLAST of TCONS_00015695 vs. Swiss-Prot (Human)
Match: MCATL (Mitochondrial basic amino acids transporter OS=Homo sapiens GN=SLC25A29 PE=1 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 8.956e-68
Identity = 117/273 (42.86%), Postives = 160/273 (58.61%), Query Frame = 3 
Query:  177 FVAGWVSGCAGVLVSHPLDTVKVRLQTQGVSAIQQQYRGTWHCLSETIKNEKVYGLFKGMSSPLLGTALWNAVIFGTYGNTIRWLAGDSLEEQHRMSNVVIASLASGFTQTFVITPLELTKTRLQIQTSQKNQVYKGLIDCCRQIYRQQGFFGLFKGFNATFIRDAIGFTAFFGIFEQFSRWISKEGPPYRDITIVGHVVAGGLTGAISWGCAFPADVIKCRIQVD---YEGRYNGFIDCVRKSYKEEGPALFRRGFWPCVLRGFPMNAAIFS 986
            F+AG   G AGVLV HP DTVKVRLQ Q V   + QYRGT HC    IK E V GL+KG+ SPL+G    NA++FG  GNT+R L  DS   Q       +A  A+G  Q  +  P+EL KTRLQ+Q +   + YKG +DC  QIY  +G  G+ +G  +T +R+   F  +F  ++  +R +  E  P   + +   ++AGG +G +SW   +P DV+K R+Q D      RY G +DCV +SY+ EG  +F RG    +LR FP+NAA F+
Sbjct:    5 FLAGCAGGVAGVLVGHPFDTVKVRLQVQSVE--KPQYRGTLHCFKSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGHDSPLNQF------LAGAAAGAIQCVICCPMELAKTRLQLQDAGPARTYKGSLDCLAQIYGHEGLRGVNRGMVSTLLRETPSFGVYFLTYDALTRALGCE--PGDRLLVPKLLLAGGTSGIVSWLSTYPVDVVKSRLQADGLRGAPRYRGILDCVHQSYRAEGWRVFTRGLASTLLRAFPVNAATFA 267
The following BLAST results are available for this feature:
BLAST of TCONS_00015695 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MCATL8.956e-6842.86Mitochondrial basic amino acids transporter OS=Hom... [more]
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