TCONS_00015697 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015697
Unique NameTCONS_00015697
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1487

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015697 ID=TCONS_00015697|Name=TCONS_00015697|organism=Clytia hemisphaerica|type=transcript|length=1487bp
ATTTGATGTTAATGCGAATTCACAGAGTGAAATAAAACTTGTCTGAAGGC
TAGTATATACTATCATGTAGAGAACATACTCGACTTGGTTTTTGGAAGGC
TCCCTCAACAGATGGAATGACTAAAAAGGAGAAGGCAATCGAAAATATCG
ATGCCTTCACACATTTTGTAGCTGGTTGGGTCTCAGGTTGTGCGGGCGTG
TTGGTGAGTCATCCTTTGGACACAGTGAAAGTTCGTTTACAAACGCAAGG
CGTATCTGCAATACAACAACAGTATCGGGGTACATGGCATTGTCTATCTG
AAAccatcaaaaatgaaaagGTTTATGGGTTGTTCAAAGGTATGTCGTCA
CCGCTCCTGGGAACTGCTCTTTGGAATGCTGTTATCTTCGGTACCTATGG
CAACACCATACGCTGGTTGGCTGGTGATAGCCTAGAAGAACAGCATCGGA
TGAGTAATGTTGTAATCGCTAGTCTAGCGTCAGGTTTCACTCAAACTTTT
GTTATTACACCTCTGGAgctcaccaaaacgaggctacaAATTCAAACATC
GcagaaaaatcaagtttataAAGgtttgattgattgttgtCGACAGATCT
ATCGCCAACAAGGTTTTTTCGGACTCTTCAAAGGGTTCAATGCAACGTTC
ATTCGAGATGCAATCGGTTTCACTGCGTTCTTTGGAATTTTCGAACAATT
TTCACGATGGATATCTAAAGAAGGGCCACCGTATCGTGATATTACCATAG
TTGGGCACGTTGTGGCCGGAGGGCTTACGGGTGCCATATCATGGGGATGC
GCTTTTCccgctgacgtcatcaaatgtCGGATTCAAGTAGATTACGAGGG
GCGATATAACGGTTTTATTGACTGTGTTCGCAAATCTTATAAAGAGGAAG
GTCCGGCGCTTTTCCGGCGTGGTTTTTGGCCCTGTGTTTTGAGAGGGTTT
CCAATGAACGCAGCAATCTTTAGTATTTATCATTATATGATCCGTGTTTA
TGAAGACCACGATATGGCAGATAGGATTGTAACAAAGTTTTTGTACGTGG
ATTGATTGAATGCAATAGTGTGACCTTTTTGAATGTTAACTTCATGTTCA
TGCATACGCAATACATCTTCGAAAACTTTTAAGGCCTGGATCCGCCATAA
CTACtgaaacacccctgtatcacagactggaaaatgaactttgatttcat
atcccaaaattcatttcaaaattcaattggACGAAAACTTGCATTccgaa
accatccccactggaacaatagaatttctatcctcattgggatttcgata
taaatttttatccccactgagggaaaacttccaccgggtctgtgagacag
ggatgaaATGAGAGGCCCTCAGACTTATCATAACTTGAAATATTAAATAA
GCAAGTTAGACGTCGAAAAGTGAATCcatttcttaaaatttgttcatttt
aatTTGAATACATCTTTTGGACGTATATCAAGAAAAT
Run BLAST on NCBI

transcript from alignment at sc0000215:344624..348524-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015697 ID=TCONS_00015697|Name=TCONS_00015697|organism=Clytia hemisphaerica|type=transcript|length=3901bp|location=Sequence derived from alignment at sc0000215:344624..348524- (Clytia hemisphaerica)
ATTTGATGTTAATGCGAATTCACAGAGTGAAATAAAGTTGTAGAAAGTTA
TTTCACTTCTTTTCAAATTTGACCCCAGTTATTGACTTTTTATACTGTAA
ATATTGACCGTTTTATTTCAATCACATATCTTAAAACGATTTTATTCATG
GAAAAAGGTTTTGAGAGCTAAAAACTATTTTAAGACACAAATTTTTAGCT
ATATGTAGTTTTGCTGAAACATAATGTGATGTTTAATGTGCGTTTTTTTG
TCTTAAATTATATTTTAAAGTTTTTACTGTTTATATACGTAAAAAGAGAA
ATGCTGAGATTATCAACCACAAAAGTATGATAGGTATTTTTAATTGGAAT
GCCTTCAATAATTTTTAAACTGTTTTTCCATTTAGACTTGTCTGAAGGCT
AGTATATACTATCATGTAGAGAACATACTCGACTTGGTTTTTGGAAGGCT
CCCTCAACAGATGGAATGACTAAAAAGGAGAAGGCAATCGAAAATATCGA
TGCCTTCACACATTTTGTAGCTGGTTGGGTCTCAGGTACTTATACTTATA
CACTTTTGGAGATCAAGAAATTAATGATGAAAAAAAAATTATATTATTAG
ACTTTGTTTACACCTCTGTATCAAAGGCAGCTAATTTCGTGACTTGAAGT
CGACCAATAGAAATTTGTTTTCGTTTTAAAACAATTTGGAACGTGTGACT
ACTGTTTCAGCAATTGNTTTTAACCAAATTGAAATTTGTTTTCGTTTTAA
TACAATTTGGAGCGTGTGACTACTGTTTCAGCAATTGCTATTATTCATCA
TAAGTAGGTCTATTAAGCCAAGTAGTCTGTCTGCCTGCCTATAATAGAGC
TATTCTAGGTTTGATACCCTATTTTTACTAATTTGAAAATTTGCAGGCAG
GCAGACTACTTGGCTTAATAGACCTACTTATGATAGTTATAATTATCACT
ATTAATTATAGATACTTATGATAGGTCAAGACCTACAATTTGCTTAAAAT
TTTACACTAAGATTTATTTTAAAGAGGACTTTGCACCTTTGGATGATAAT
CAGAGAGTAAATCCAATATTTTGTTGTCACAGGTTGTGCGGGCGTGTTGG
TGAGTCATCCTTTGGACACAGTGAAAGTTCGTTTACAAACGCAAGGCGTA
TCTGCAATACAACAACAGTATCGGGGTACATGGCATTGTCTATCTGAAAC
CATCAAAAATGAAAAGGTAGTTCTCATCATTCTTCACTTCGATTATGTAA
AAACTTTTTTTCTGATTGCATTCAAAAATAGAACCCCAAAAAGTGAGGTT
TTCAATCACAGCCACTTTTTAGCCCACAACGTTGATATTCTTGTGGCTGC
TGTGTAGTACAAAATTCTATAAAATAAGGAAATTGACGAGCTTTCCAAAA
ATGTGGCTCCCTTTGAAGTTGAGTGATTCAGTCTTGAAATATAAGATGGC
AAAGTGAGGGCAGGTTTTGTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT
TTTGGTTCCATTTTTGATATTTTGTGGATAAACCCTTTTGCTACGAGTTT
CATCTGACTGAAAAATATGCATTCCTCTTGTTGTATTTTTCTTGGGCTAA
ATTAAAGCCCCTTTTGTACTTTCTACTCATTCTGTTTAGGTTTATGGGTT
GTTCAAAGGTATGTCGTCACCGCTCCTGGGAACTGCTCTTTGGAATGCTG
TTATCTTCGGTACCTATGGCAACACCATACGCTGGTTGGCTGGTGATAGC
CTAGAAGAACAGCATCGGATGAGTAATGTTGTAATCGCTAGTCTAGCGTC
AGGTTTCACTCAAACTTTTGTTATTACACCTCTGGAGCTCACCAAAACGA
GGCTACAAATTCAAACATCGCAGAAAAATCAAGTTTATAAAGGTTACTTT
TTATTGAATTATGGACACTTTAATTTGTTGACAATTTTTATGTAGTCTTT
TTGCTATATTAAAAAGCTATATATCATATGCCATTGGAAAGATTTCCCAG
AAGATAGAATGATATAAAAGATTAAAGAATTTTGCAAAGTTGACAAATGA
AGAAGAAAAGGGAAGATGAAAAAATGAAGTTTTTTCCTATTTTTCTACTG
GTACCAAAATCATTACATCAGACCTTTCAGAATTATTGAACCGTGCTGAT
TTCAAATCCGTATTTCTTGTATCTTCCTTAGATAAAAAGTTACAGCCCTA
TGAAGTAGGCCTAAAACGGACAAAAATGACCAAAAATTAACACATTTTAC
AGTGCTGTTTTTTATTTGTGTTTTTTATTATTTTCAGGTTTGATTGATTG
TTGTCGACAGATCTATCGCCAACAAGGTTTTTTCGGACTCTTCAAAGGGT
TCAATGCAACGTTCATTCGAGATGCAATCGGTTTCACTGCGTTCTTTGGA
ATTTTCGAACAATTTTCACGATGGATATCTAAAGAAGGGCCACCGTATCG
TGATATTACCATAGTTGGGCACGTTGTGGCCGGAGGGCTTACGGGTGCCA
TATCATGGGGATGCGCTTTTCCCGCTGACGTCATCAAATGTCGGATTCAA
GTAGATTACGAGGGGCGATATAACGGTTTTATTGACTGTGTTCGCAAATC
TTATAAAGAGGAAGGTCCGGCGCTTTTCCGGCGTGGTTTTTGGCCCTGTG
TTTTGAGAGGGTTTCCAATGAACGCAGCAATCTTTAGTATTTATCATTAT
ATGATCCGTGTTTATGAAGACCACGATATGGCAGATAGGATTGTAACAAA
GTTTTTGTACGTGGATTGATTGAATGCAATAGTGTGACCTTTTTGAATGT
TAACTTCATGTTCATGCATACGCAATACATCTTCGAAAACTTTTAAGGCC
TGGATCCGCCATAACTACTGAAACACCCCTGTATCACAGACTGGAAAATG
AACTTTGATTTCATATCCCAAAATTCATTTCAAAATTCAATTGGACGAAA
ACTTGCATTCCGAAACCATCCCCACTGGAACAATAGAATTTCTATCCTCA
TTGGGATTTCGATATAAATTTTTATCCCCACTGAGGGAAAACTTCCACCG
GGTCTGTGAGACAGGGATGAAATGAGAGGCCCTCAGACTTATCATAACTT
GAAATATTAAATAAGCAAGTTAGACGTCGAAAAGTGAATCCATTTCTTAA
AATTTGTTCATTTTAATTTGAATACATCTTTTGGACGTATATCAAGAAAA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008756XLOC_008756Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015697-exon-sc0000215-1575043694:348489..348524TCONS_00015697-exon-sc0000215-1575043694:348489..348524Clytia hemisphaericaexon
TCONS_00015697-exon-sc0000215-1575043694:347990..348139TCONS_00015697-exon-sc0000215-1575043694:347990..348139Clytia hemisphaericaexon
TCONS_00015697-exon-sc0000215-1575043694:347309..347442TCONS_00015697-exon-sc0000215-1575043694:347309..347442Clytia hemisphaericaexon
TCONS_00015697-exon-sc0000215-1575043694:345933..346185TCONS_00015697-exon-sc0000215-1575043694:345933..346185Clytia hemisphaericaexon
TCONS_00015697-exon-sc0000215-1575043694:344624..345537TCONS_00015697-exon-sc0000215-1575043694:344624..345537Clytia hemisphaericaexon
TCONS_00015697-exon-sc0000215-1510915933:348489..348524TCONS_00015697-exon-sc0000215-1510915933:348489..348524Clytia hemisphaericaexon
TCONS_00015697-exon-sc0000215-1510915933:347990..348139TCONS_00015697-exon-sc0000215-1510915933:347990..348139Clytia hemisphaericaexon
TCONS_00015697-exon-sc0000215-1510915933:347309..347442TCONS_00015697-exon-sc0000215-1510915933:347309..347442Clytia hemisphaericaexon
TCONS_00015697-exon-sc0000215-1510915933:345933..346185TCONS_00015697-exon-sc0000215-1510915933:345933..346185Clytia hemisphaericaexon
TCONS_00015697-exon-sc0000215-1510915933:344624..345537TCONS_00015697-exon-sc0000215-1510915933:344624..345537Clytia hemisphaericaexon
TCONS_00015697-exon-sc0000215-1491911889:348489..348524TCONS_00015697-exon-sc0000215-1491911889:348489..348524Clytia hemisphaericaexon
TCONS_00015697-exon-sc0000215-1491911889:347990..348139TCONS_00015697-exon-sc0000215-1491911889:347990..348139Clytia hemisphaericaexon
TCONS_00015697-exon-sc0000215-1491911889:347309..347442TCONS_00015697-exon-sc0000215-1491911889:347309..347442Clytia hemisphaericaexon
TCONS_00015697-exon-sc0000215-1491911889:345933..346185TCONS_00015697-exon-sc0000215-1491911889:345933..346185Clytia hemisphaericaexon
TCONS_00015697-exon-sc0000215-1491911889:344624..345537TCONS_00015697-exon-sc0000215-1491911889:344624..345537Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:344624..348524 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.679071	0	1.28879	0.0101231	0.220562	0.00799061	1.57175	0	0	2.13616e-08	0	0	0	0	0	0	0	5.69985e-08	0	0	0	0	5.42883e-06	6.3392e-08	8.19675e-07	0	0	0
Blast
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BLAST of TCONS_00015697 vs. Swiss-Prot (Human)
Match: MCATL (Mitochondrial basic amino acids transporter OS=Homo sapiens GN=SLC25A29 PE=1 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 8.143e-68
Identity = 117/273 (42.86%), Postives = 160/273 (58.61%), Query Frame = 3 
Query:  165 FVAGWVSGCAGVLVSHPLDTVKVRLQTQGVSAIQQQYRGTWHCLSETIKNEKVYGLFKGMSSPLLGTALWNAVIFGTYGNTIRWLAGDSLEEQHRMSNVVIASLASGFTQTFVITPLELTKTRLQIQTSQKNQVYKGLIDCCRQIYRQQGFFGLFKGFNATFIRDAIGFTAFFGIFEQFSRWISKEGPPYRDITIVGHVVAGGLTGAISWGCAFPADVIKCRIQVD---YEGRYNGFIDCVRKSYKEEGPALFRRGFWPCVLRGFPMNAAIFS 974
            F+AG   G AGVLV HP DTVKVRLQ Q V   + QYRGT HC    IK E V GL+KG+ SPL+G    NA++FG  GNT+R L  DS   Q       +A  A+G  Q  +  P+EL KTRLQ+Q +   + YKG +DC  QIY  +G  G+ +G  +T +R+   F  +F  ++  +R +  E  P   + +   ++AGG +G +SW   +P DV+K R+Q D      RY G +DCV +SY+ EG  +F RG    +LR FP+NAA F+
Sbjct:    5 FLAGCAGGVAGVLVGHPFDTVKVRLQVQSVE--KPQYRGTLHCFKSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGHDSPLNQF------LAGAAAGAIQCVICCPMELAKTRLQLQDAGPARTYKGSLDCLAQIYGHEGLRGVNRGMVSTLLRETPSFGVYFLTYDALTRALGCE--PGDRLLVPKLLLAGGTSGIVSWLSTYPVDVVKSRLQADGLRGAPRYRGILDCVHQSYRAEGWRVFTRGLASTLLRAFPVNAATFA 267
The following BLAST results are available for this feature:
BLAST of TCONS_00015697 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MCATL8.143e-6842.86Mitochondrial basic amino acids transporter OS=Hom... [more]
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