TCONS_00015700 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015700
Unique NameTCONS_00015700
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3268

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015700 ID=TCONS_00015700|Name=TCONS_00015700|organism=Clytia hemisphaerica|type=transcript|length=3268bp
CGAATTTGTGATTTGAGATATTAATAAAAATCCACTAATGACGTCAATTC
AATTAATGGGTCATTTGGAAAGCTTTCCTCTCCTcctttttgatttgttt
ggtgAAATTGATATAAGAATTAAGTTTTAAGCTTGTAAAACAAGCAACGA
AGGAGAGGCACGTTTTGTTTAACGAAGAAGATCTctgttcaaaatttctt
ttataaacaaACTTTGAAGAGCAGCCATAAATAAAGATATTTGAGCAGTC
TGTCTGATAAAGTGGAAGAGAACTTTAATGTGCAAAAACGAACGAGACAA
GATTTGTTGAAGAAAGCGattattttctgacattttagGGGAAGTTAGAA
AATACAAGATGAGGATTCGGAAAGATTTTTTGACAATCAGTTTCTTTTTC
ATAATGGTGACTGGAGTTGCAGCTGAAGATGGTTGTAACGTCATCAACTG
TAAATGTGACACTGCAGGTAAAAGAGTTTATGATTGCGTCAACGTCAATG
ATACGATTCTAAGAATGATCGCTCAACAGATCAACAACGATACAATAGAT
TTGAGTATCACTGGACAGAATTTAACAACGTTTGATGCACCCTTTTATCT
TGAGAACTTGAACAATCTCGATTTAAGCGGGAACTCGTTTAAAAGAATCC
CTGAAAATTTAGCCAAGAAGTTTCCAAAACTTGGAGTATTGGAGCTGAAG
GATAATTCAATTGATAAACTGGATCCAGAAGATTTTACAGGGTTGAGTAA
TTTGAATAAACTCAGAATGGATCGTAATCTTTTGACTGAAATTAAAGGAG
GAACCTTTATCGAGCTGAAGAATCTGAAACAACTATATGCCGATGAAAAC
CAAATTGAAACATTATCTGCCGATTCCTTCTCTGGTGCATCAAATCTTTT
GAAcatcgaaatgaaaaaaaacaatgtcaAGAGCCTCCCTGTTGGAATCT
TCGACCCATTGAAACCAAACAACCAATTGAAAATCGAACTTACAGAAAAC
TATCTGACTGAAATTCCAAATGGATTATTTACAAAATTAACAGAGTTCCA
ATTCATCCTTGCAGACAAGAATTTATTGACGAAGATTGGAGCCACAGCGT
TTCAAGGAGTGCGTGCATATGCCATCAATATCAAGGATAACAAAATAACT
GAACTCTTGAAAAGCACTTTTGAAGGGGCACAACTTCAAATTCTTCAAGT
AGATGATAATCCAATCAGATGCCAATGTTCCTTGAAAGATCTACACGGCC
TTGTGGATCAAATGACTGGANTAACGATACAATAGATTTGAGTATCACTG
GACAGAATTTAACAACGTTTGATGCACCCTTTTATCTTGAGAACTTGAAC
AATCTCGATTTAAGCGGGAACTCGTTTAAAAGAATCCCTGAAAATTTAGC
CAAGAAGTTTCCAAAACTTGGAGTATTGGAGCTGAAGGATAATTCAATTG
ATAAACTGGAACCAGAAGATTTTACAGGGTTGAGTAATTTGAATAAACTC
AGAATGGATCGTAATCTTTTGACTGAAATTAAAGGAGGAACCTTTATCGA
GCTGAAGAATCTGAAACAGCTATATGCCGATGAAAACCAAATTGAAACAT
TATCTGCCGATTCCTTCTCTGGTGCATCAAATCTTTTGAAcatcgaaatg
aaaaaaaacaaagtcaaGAGCCTCCCTGTTGGAATCTTCGACCCATTGAA
ACCAAACAACCAATTGAAAATCGAACTTACAGAAAACTATCTGACTGAAA
TTCCAAATGGATTATTTACAAAATTAACAGAGTTCCAATTCATCCTTGCA
GACAAGAATTTATTGACGAAGATTGGAGACACAGCGTTTCAAGGAGTGCG
TGCATATGCCATCAATATCAAGGATAACAAAATAACTGAACTCTTGAAAA
GCACTTTTGAAGGGGCACAACTTCAAATTCTTCAAGTAGATGATAATCCA
ATCAGATGCCAATGTTCCTTGAAAGATCTACACGGCCTTGTGGATCAAAT
GACTGGAACGTGCATCAATAAAACTTCAGCGGAAATAGACTCAGCTGAAT
GGATTCGAGAAGAGTTGTGTAATGAATGCGAGGTTAATAACACTTGCCAG
CATGGAGGTATCTGTGTACCAGTAGGCAAGATGGATATCAACTGCAAATG
TATTAATGACTACCACGGGAAGAATTGCCAGGATAAACCAATATGTGAAT
CTGTAACTTGCCAAAACAAGGGAACTTGTAAGAATCTCAGCCCCTCTAAC
TACACTTGTGAATGCAAAGATAATTATTCTGGCAACCATTGTGAGATTTT
TAACGAGGACAACAGTTTAACGGTTGCAGAGATCGTTGGGATTGTGCTtg
gtgttttgttgtttttcattctGCTTGTGGTGATTTATATGCTCTGTAGA
AAGAGATGTCAAAAGGGTGGAGACGGAAAAGCTAAAGCAGGAGAAGGTGT
ACCTTTGAAAGGAGGCCCTGTCTCTGCTTGATACGAACGATGCAGCGTTG
CGTTCAATGGGTTGACTTGAAGGAAATAAATTTCTTCTTGGAGGGTTTTA
TTACTCTAGAACTTTTGTTAAGGCTATATGGAAGTTGATCACAAAGCTGG
AGCTGacatttatttcatattttctttaAGCACGCCCAGAGATTTAAtgg
tgtttgtttttttgtacatttttgtgaCATTTAGGATTATTTGATACAAA
CTATTTGATAGATTGGTGTGTCAAACATTTCATCATAACAAAGCGTTCAA
AGTacttttgctttgttttgacaAAGGAGGAAACAAGAGCTGTGGTTTGG
TTGATAGTTTTACGTCTAATGTTTATTATTGAGTAATTTCATACAAGGTT
TAAAATCGTCTTACATAAATATTGTAAATTATATTTAGTTTGTGTTTATT
TCATTAGGATTTTGTTTGTTATTTCTAGAAACTTGAAAATTCTTATTATT
ACAAACAAATCATGAAAGAATTTACCTGCTACCGCTTGACCCAGAAAAAG
TATAAGGGTTTGATGGGTAACTGCGTTCGAAATAATGTGAGCTTTGGTAT
CAAGgtgaattttgatttcaaaagcttataacttgagaaCCACTCCACTT
AACTGTACAAACTAACTGTACCaatgttaaaaatatatatgccaaatttt
aagtttgcctttcctgttgacaattaaaaaagaaaacagtaAAAGTTTAC
ATTACTTTGGACACAGTTAACCGTCAaacttttacactttttctgggtca
cccggtagtttATCCAAT
Run BLAST on NCBI

transcript from alignment at sc0000215:380433..383700-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015700 ID=TCONS_00015700|Name=TCONS_00015700|organism=Clytia hemisphaerica|type=transcript|length=3268bp|location=Sequence derived from alignment at sc0000215:380433..383700- (Clytia hemisphaerica)
CGAATTTGTGATTTGAGATATTAATAAAAATCCACTAATGACGTCAATTC
AATTAATGGGTCATTTGGAAAGCTTTCCTCTCCTCCTTTTTGATTTGTTT
GGTGAAATTGATATAAGAATTAAGTTTTAAGCTTGTAAAACAAGCAACGA
AGGAGAGGCACGTTTTGTTTAACGAAGAAGATCTCTGTTCAAAATTTCTT
TTATAAACAAACTTTGAAGAGCAGCCATAAATAAAGATATTTGAGCAGTC
TGTCTGATAAAGTGGAAGAGAACTTTAATGTGCAAAAACGAACGAGACAA
GATTTGTTGAAGAAAGCGATTATTTTCTGACATTTTAGGGGAAGTTAGAA
AATACAAGATGAGGATTCGGAAAGATTTTTTGACAATCAGTTTCTTTTTC
ATAATGGTGACTGGAGTTGCAGCTGAAGATGGTTGTAACGTCATCAACTG
TAAATGTGACACTGCAGGTAAAAGAGTTTATGATTGCGTCAACGTCAATG
ATACGATTCTAAGAATGATCGCTCAACAGATCAACAACGATACAATAGAT
TTGAGTATCACTGGACAGAATTTAACAACGTTTGATGCACCCTTTTATCT
TGAGAACTTGAACAATCTCGATTTAAGCGGGAACTCGTTTAAAAGAATCC
CTGAAAATTTAGCCAAGAAGTTTCCAAAACTTGGAGTATTGGAGCTGAAG
GATAATTCAATTGATAAACTGGATCCAGAAGATTTTACAGGGTTGAGTAA
TTTGAATAAACTCAGAATGGATCGTAATCTTTTGACTGAAATTAAAGGAG
GAACCTTTATCGAGCTGAAGAATCTGAAACAACTATATGCCGATGAAAAC
CAAATTGAAACATTATCTGCCGATTCCTTCTCTGGTGCATCAAATCTTTT
GAACATCGAAATGAAAAAAAACAATGTCAAGAGCCTCCCTGTTGGAATCT
TCGACCCATTGAAACCAAACAACCAATTGAAAATCGAACTTACAGAAAAC
TATCTGACTGAAATTCCAAATGGATTATTTACAAAATTAACAGAGTTCCA
ATTCATCCTTGCAGACAAGAATTTATTGACGAAGATTGGAGCCACAGCGT
TTCAAGGAGTGCGTGCATATGCCATCAATATCAAGGATAACAAAATAACT
GAACTCTTGAAAAGCACTTTTGAAGGGGCACAACTTCAAATTCTTCAAGT
AGATGATAATCCAATCAGATGCCAATGTTCCTTGAAAGATCTACACGGCC
TTGTGGATCAAATGACTGGANTAACGATACAATAGATTTGAGTATCACTG
GACAGAATTTAACAACGTTTGATGCACCCTTTTATCTTGAGAACTTGAAC
AATCTCGATTTAAGCGGGAACTCGTTTAAAAGAATCCCTGAAAATTTAGC
CAAGAAGTTTCCAAAACTTGGAGTATTGGAGCTGAAGGATAATTCAATTG
ATAAACTGGAACCAGAAGATTTTACAGGGTTGAGTAATTTGAATAAACTC
AGAATGGATCGTAATCTTTTGACTGAAATTAAAGGAGGAACCTTTATCGA
GCTGAAGAATCTGAAACAGCTATATGCCGATGAAAACCAAATTGAAACAT
TATCTGCCGATTCCTTCTCTGGTGCATCAAATCTTTTGAACATCGAAATG
AAAAAAAACAAAGTCAAGAGCCTCCCTGTTGGAATCTTCGACCCATTGAA
ACCAAACAACCAATTGAAAATCGAACTTACAGAAAACTATCTGACTGAAA
TTCCAAATGGATTATTTACAAAATTAACAGAGTTCCAATTCATCCTTGCA
GACAAGAATTTATTGACGAAGATTGGAGACACAGCGTTTCAAGGAGTGCG
TGCATATGCCATCAATATCAAGGATAACAAAATAACTGAACTCTTGAAAA
GCACTTTTGAAGGGGCACAACTTCAAATTCTTCAAGTAGATGATAATCCA
ATCAGATGCCAATGTTCCTTGAAAGATCTACACGGCCTTGTGGATCAAAT
GACTGGAACGTGCATCAATAAAACTTCAGCGGAAATAGACTCAGCTGAAT
GGATTCGAGAAGAGTTGTGTAATGAATGCGAGGTTAATAACACTTGCCAG
CATGGAGGTATCTGTGTACCAGTAGGCAAGATGGATATCAACTGCAAATG
TATTAATGACTACCACGGGAAGAATTGCCAGGATAAACCAATATGTGAAT
CTGTAACTTGCCAAAACAAGGGAACTTGTAAGAATCTCAGCCCCTCTAAC
TACACTTGTGAATGCAAAGATAATTATTCTGGCAACCATTGTGAGATTTT
TAACGAGGACAACAGTTTAACGGTTGCAGAGATCGTTGGGATTGTGCTTG
GTGTTTTGTTGTTTTTCATTCTGCTTGTGGTGATTTATATGCTCTGTAGA
AAGAGATGTCAAAAGGGTGGAGACGGAAAAGCTAAAGCAGGAGAAGGTGT
ACCTTTGAAAGGAGGCCCTGTCTCTGCTTGATACGAACGATGCAGCGTTG
CGTTCAATGGGTTGACTTGAAGGAAATAAATTTCTTCTTGGAGGGTTTTA
TTACTCTAGAACTTTTGTTAAGGCTATATGGAAGTTGATCACAAAGCTGG
AGCTGACATTTATTTCATATTTTCTTTAAGCACGCCCAGAGATTTAATGG
TGTTTGTTTTTTTGTACATTTTTGTGACATTTAGGATTATTTGATACAAA
CTATTTGATAGATTGGTGTGTCAAACATTTCATCATAACAAAGCGTTCAA
AGTACTTTTGCTTTGTTTTGACAAAGGAGGAAACAAGAGCTGTGGTTTGG
TTGATAGTTTTACGTCTAATGTTTATTATTGAGTAATTTCATACAAGGTT
TAAAATCGTCTTACATAAATATTGTAAATTATATTTAGTTTGTGTTTATT
TCATTAGGATTTTGTTTGTTATTTCTAGAAACTTGAAAATTCTTATTATT
ACAAACAAATCATGAAAGAATTTACCTGCTACCGCTTGACCCAGAAAAAG
TATAAGGGTTTGATGGGTAACTGCGTTCGAAATAATGTGAGCTTTGGTAT
CAAGGTGAATTTTGATTTCAAAAGCTTATAACTTGAGAACCACTCCACTT
AACTGTACAAACTAACTGTACCAATGTTAAAAATATATATGCCAAATTTT
AAGTTTGCCTTTCCTGTTGACAATTAAAAAAGAAAACAGTAAAAGTTTAC
ATTACTTTGGACACAGTTAACCGTCAAACTTTTACACTTTTTCTGGGTCA
CCCGGTAGTTTATCCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008759XLOC_008759Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015700-exon-sc0000215-1575043694:380433..383700TCONS_00015700-exon-sc0000215-1575043694:380433..383700Clytia hemisphaericaexon
TCONS_00015700-exon-sc0000215-1510915933:380433..383700TCONS_00015700-exon-sc0000215-1510915933:380433..383700Clytia hemisphaericaexon
TCONS_00015700-exon-sc0000215-1491911889:380433..383700TCONS_00015700-exon-sc0000215-1491911889:380433..383700Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:380433..383700 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.00358	7.7609	2.92362	1.56729	0.524707	0.113081	1.54618	1.91583	2.20572	43.3819	5.23209	8.69265	28.9823	24.064	17.6147	15.4114	4.59373	7.56614	8.34738	11.9614	0.341993	0.450393	2.06838	1.9542	2.43052	1.69468	63.828	39.7533	24.6944	23.3197
Blast
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BLAST of TCONS_00015700 vs. Swiss-Prot (Human)
Match: LRC15 (Leucine-rich repeat-containing protein 15 OS=Homo sapiens GN=LRRC15 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 4.387e-23
Identity = 42/139 (30.22%), Postives = 73/139 (52.52%), Query Frame = 1 
Query: 1288 LSITGQNLTTFDAPFY--LENLNNLDLSGNSFKRIPENLAKKFPKLGVLELKDNSIDKLEPEDFTGLSNLNKLRMDRNLLTEIKGGTFIELKNLKQLYADENQIETLSADSFSGASNLLNIEMKKNKVKSLPVGIFDPL 1698
            L++ G +L       +  + NL  L L  N    +P+N+     +L VL L  N I  + P  F GL+ L +L +  N L ++ G  F  L NL+ +    N++  L  + F+  + L+ I+++ N++++LP+GIFD L
Sbjct:  274 LTLFGNSLKELSPGIFGPMPNLRELWLYDNHISSLPDNVFSNLRQLQVLILSRNQISFISPGAFNGLTELRELSLHTNALQDLDGNVFRMLANLQNISLQNNRLRQLPGNIFANVNGLMAIQLQNNQLENLPLGIFDHL 412

HSP 2 Score: 54.6842 bits (130), Expect = 4.387e-23
Identity = 54/202 (26.73%), Postives = 87/202 (43.07%), Query Frame = 2 
Query:  689 LELKDNSIDKLDPEDFTGLSNLNKLRMDRNLLTEIKGGTFIELKNLKQLYADENQIETLSADSFSG------------------------ASNLLNIEMKKNNVKSLPVGIFDPLKPNNQLKIELTENYLTEIPNGLFTKLTEFQFILADKNLLTKIGATAFQG-VRAYAINIKDNKITELLKSTFEGAQ-LQILQVDDNPI 1216
            L++ +  I +L+   F  +S L  LR+++N L+ I  G F  L +L+ L    N+++ L    F G                         SNL  +++  N+++ +P G FD L      K+ L +N LT I   +F  L   Q +   +N LT I    F G V    + ++ N+I  L    F     LQ L + +N I
Sbjct:   58 LQILNTHITELNESPFLNISALIALRIEKNELSRITPGAFRNLGSLRYLSLANNKLQVLPIGLFQGLDSLESLLLSSNQLLQIQPAHFSQCSNLKELQLHGNHLEYIPDGAFDHLV--GLTKLNLGKNSLTHISPRVFQHLGNLQVLRLYENRLTDIPMGTFDGLVNLQELALQQNQIGLLSPGLFHNNHNLQRLYLSNNHI 257

HSP 3 Score: 88.9669 bits (219), Expect = 4.942e-18
Identity = 65/230 (28.26%), Postives = 106/230 (46.09%), Query Frame = 1 
Query: 1339 ENLNNLDLSGNSFKRIPENLAKKFPKLGVLELKDNSIDKLEPEDFTGLSNLNKLRMDRNLLTEIKGGTFIELKNLKQLYADENQIETLSADSFSGASNLLNIEMKKNKVKSLPVGIFDPLKPNNQL----------------------KIELTENYLTEIPNGLFTKLTEFQFILADKNLLTKIGDTAFQGVRAYA-INIKDNKITELLKSTFEG-AQLQILQVDDNPIR 1956
             NL  L L GN  + IP+        L  L L  NS+  + P  F  L NL  LR+  N LT+I  GTF  L NL++L   +NQI  LS   F    NL  + +  N +  LP  +F  L   N+L                      ++ L +N+++ +P+ +F+ L + Q ++  +N ++ I   AF G+     +++  N + +L  + F   A LQ + + +N +R
Sbjct:  149 SNLKELQLHGNHLEYIPDGAFDHLVGLTKLNLGKNSLTHISPRVFQHLGNLQVLRLYENRLTDIPMGTFDGLVNLQELALQQNQIGLLSPGLFHNNHNLQRLYLSNNHISQLPPSVFMQLPQLNRLTLFGNSLKELSPGIFGPMPNLRELWLYDNHISSLPDNVFSNLRQLQVLILSRNQISFISPGAFNGLTELRELSLHTNALQDLDGNVFRMLANLQNISLQNNRLR 378

HSP 4 Score: 87.4261 bits (215), Expect = 1.692e-17
Identity = 66/232 (28.45%), Postives = 107/232 (46.12%), Query Frame = 2 
Query:  602 ENLNNLDLSGNSFKRIPENLAKKFPKLGVLELKDNSIDKLDPEDFTGLSNLNKLRMDRNLLTEIKGGTFIELKNLKQLYADENQIETLSADSFSGASNLLNIEMKKNNVKSLP------------------------VGIFDPLKPNNQLKIELTENYLTEIPNGLFTKLTEFQFILADKNLLTKIGATAFQGV-RAYAINIKDNKITELLKSTFEG-AQLQILQVDDNPIR 1219
             NL  L L GN  + IP+        L  L L  NS+  + P  F  L NL  LR+  N LT+I  GTF  L NL++L   +NQI  LS   F    NL  + +  N++  LP                         GIF P+   N  ++ L +N+++ +P+ +F+ L + Q ++  +N ++ I   AF G+     +++  N + +L  + F   A LQ + + +N +R
Sbjct:  149 SNLKELQLHGNHLEYIPDGAFDHLVGLTKLNLGKNSLTHISPRVFQHLGNLQVLRLYENRLTDIPMGTFDGLVNLQELALQQNQIGLLSPGLFHNNHNLQRLYLSNNHISQLPPSVFMQLPQLNRLTLFGNSLKELSPGIFGPMP--NLRELWLYDNHISSLPDNVFSNLRQLQVLILSRNQISFISPGAFNGLTELRELSLHTNALQDLDGNVFRMLANLQNISLQNNRLR 378
The following BLAST results are available for this feature:
BLAST of TCONS_00015700 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRC154.387e-2330.22Leucine-rich repeat-containing protein 15 OS=Homo ... [more]
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