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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015706 ID=TCONS_00015706|Name=TCONS_00015706|organism=Clytia hemisphaerica|type=transcript|length=1849bp
GATCAGGTGTGTTCAGAATGAGCAAGTTTTTCGTTTGCCAGGACAGGGAT
GTTTTTGATTCATTGGTATATTTAGATGATAGTTAAGATGGGTATACTAC
TTGGTTCTTTTTTGTCCTTTTGGTTTTGATCAAATGTTCTGGTACTGATG
TTAACTATTTTGTGGGTTTAGAAAGTATACTTGAGGCACGAAATTAATTT
TCTGGCCCATATACGATAATTTCAATCAGGGATTTTATAGGATTTTAACT
ATTTCACAATCTTTCATTACAGCAGAAACTAATACGAAAAAGAATCAAAT
AATTCAAATGCAACCATGGTTACAACAGACGCGACGCAACAACAAACAAC
CGCTGAAAACACCCCGACACACACAACGTCTGGTTGTAAGAAAGTCGTGG
TCGTCGGTGATGGAAGTTGTGGGAAGACGTGTTTATTGATGTCTATAATC
GAACGTGATGCACCTGACGGCTACGTACCCACAGTCTTCGAAACGTACGT
CAAAGAAATCGACCACGGAAAAACGTCGTATGAAGTATCCTTTTACGATA
CGGCGGGACAGGATGTTTATGATCGCTTACGGCCGTTATCGTATCCCGAT
ACAGACGTTTTCTTAGTATGTTTTGCTGTGGATTCCCCGGACAGTTTATA
TAATGCTTATGATAAATGGACACCTGAGGTTAAACATTTCGGACCTAACG
TACCATTTGTCTTAGTAGGGACCAAATGCGATTTACGTAGTGATGAGAGC
ACGTTGAAGAGATTACGTAAAGCTAAACAAGAAGTCATTACGCAAGAAGA
AGGACGGGAAATGGCGAAAAAGCTTAAAGCTTCTGCTTACGTAGAATGTT
CTGCGTTGACGGGGTTTAACGTTAATGAAGTAATTAGTACGGCGTTGAAA
TCAGCCCTCAAGAAGCAACACAAACAATTGAACAAGTTGAAGCAATTAAG
GTGCACTTTCTTGTGAAGGAGAATGGATCGAGTTATAGTGGACATCCCAA
TGATAAGACCTAGGGAGTTTGGATGGAGGCAGTTTGATCTCTAGTGATTA
TTTAATCAATGACAATGAACTGCACTTAAATCCTAGCAGTAGTGCACACC
ATTGATCTGCGCGAAAACTTATTTTCCGACTGGGACTAAATATGGCTCAT
TATTTAACCAAGATTGTCCGTTTGGATTTCAGAAATGCAACTGATTTTGG
CTACCACCTACACAGTGGAATATCACACACCCTGTGACGGGAAGAATGCC
AACATctcaagaagaagaaaataaacgaTAAATAAACTACATAACATTTC
TTCCTTCTATCTTTTATGATATGAGATGTTTTCGGACATCagttttttgc
taaattccgcaCTTAGCATTTATGATGTTATGAGCATCTTCTACCAAAGC
GAATGTTTTTGGTTTAGAGAAGAAAGAATGACGTCACCATTTATCAGGTC
ATCAATGACCAGTAGAATAACGTTATTGTACTTTTTGAGCATCTAACTCA
ACCGAAGAAGTTATGAAACAGTAGTTACATCATATTGTACTGTGTTCGGA
ACTTAATTAGGTTGGTTCACGCACTTCCTATTTAATTTGCTAATAACATA
TTTTGATGGCAATTAACAAATGGTTCACCTGTTTGTCAGAATGGTAATAA
AATAATTAGCTTTTTTCATagaatcgcaaaattttctctctttATATTTT
CGGATTCTCGATTATACCAACATATCAAAGACAATACCTAtaaaatttta
gatgaaattttaaaccaaaataaatAAGTTTGTAAATATACAATTTGtga
atttttatatttattagtattttttatagaaaaaattacgtaatgtttt Run BLAST on NCBI transcript from alignment at sc0000215:414793..416712- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015706 ID=TCONS_00015706|Name=TCONS_00015706|organism=Clytia hemisphaerica|type=transcript|length=1920bp|location=Sequence derived from alignment at sc0000215:414793..416712- (Clytia hemisphaerica)
GATCAGGTGTGTTCAGAATGAGCAAGTTTTTCGTTTGCCAGGACAGGGAT
GTTTTTGATTCATTGGTATATTTAGATGATAGTTAAGATGGGTATACTAC
TTGGTTCTTTTTTGTCCTTTTGGTTTTGATCAAATGTTCTGGTACTGATG
TTAACTATTTTGTGGGTTTAGAAAGTATACTTGAGGCACGAAATTAATTT
TCTGGCCCATATACGATAATTTCAATCAGGGATTTTATAGGATTTTAACT
ATTTCACAATCTTTCATTACAGCAGAAACTAATACGAAAAAGAATCAAAT
AATTCAAATGCAACCATGGTTACAACAGACGCGACGCAACAACAAACAAC
CGCTGAAAACACCCCGACACACACAACGTCTGGTTGTAAGAAAGTCGTGG
TCGTCGGTGATGGAAGTTGTGGGAAGACGTGTTTATTGATGTCTATAATC
GAACGTGATGCACCTGACGGCTACGTACCCACAGTCTTCGAAACGTACGT
CAAAGAAATCGACCACGGAAAAACGTCGTATGAAGTATCCTTTTACGATA
CGGCGGGACAGGATGTTTATGATCGCTTACGGCCGTTATCGTATCCCGAT
ACAGACGTTTTCTTAGTATGTTTTGCTGTGGATTCCCCGGACAGTTTATA
TAATGCTTATGATAAATGGACACCTGAGGTTAAACATTTCGGACCTAACG
TACCATTTGTCTTAGTAGGGACCAAATGCGATTTACGTAGTGATGAGAGC
ACGTTGAAGAGATTACGTAAAGCTAAACAAGAAGTCATTACGCAAGAAGA
AGGACGGGAAATGGCGAAAAAGCTTAAAGCTTCTGCTTACGTAGAATGTT
CTGCGTTGACGGGGTTTAACGTTAATGAAGTAATTAGTACGGCGTTGAAA
TCAGCCCTCAAGAAGCAACACAAACAATTGAACAAGTTGAAGCAATTAAG
GTGCACTTTCTTGTGAAGGAGAATGGATCGAGTTATAGTGGACATCCCAA
TGATAAGACCTAGGGAGTTTGGATGGAGGCAGTTTGATCTCNAATGGCTT
GAAATATAGTGGAAATCCCAATGATAAGACCTAGGGAGTTTGGATGGAGG
CAGTTTGATCTCTAGTGATTATTTAATCAATGACAATGAACTGCACTTAA
ATCCTAGCAGTAGTGCACACCATTGATCTGCGCGAAAACTTATTTTCCGA
CTGGGACTAAATATGGCTCATTATTTAACCAAGATTGTCCGTTTGGATTT
CAGAAATGCAACTGATTTTGGCTACCACCTACACAGTGGAATATCACACA
CCCTGTGACGGGAAGAATGCCAACATCTCAAGAAGAAGAAAATAAACGAT
AAATAAACTACATAACATTTCTTCCTTCTATCTTTTATGATATGAGATGT
TTTCGGACATCAGTTTTTTGCTAAATTCCGCACTTAGCATTTATGATGTT
ATGAGCATCTTCTACCAAAGCGAATGTTTTTGGTTTAGAGAAGAAAGAAT
GACGTCACCATTTATCAGGTCATCAATGACCAGTAGAATAACGTTATTGT
ACTTTTTGAGCATCTAACTCAACCGAAGAAGTTATGAAACAGTAGTTACA
TCATATTGTACTGTGTTCGGAACTTAATTAGGTTGGTTCACGCACTTCCT
ATTTAATTTGCTAATAACATATTTTGATGGCAATTAACAAATGGTTCACC
TGTTTGTCAGAATGGTAATAAAATAATTAGCTTTTTTCATAGAATCGCAA
AATTTTCTCTCTTTATATTTTCGGATTCTCGATTATACCAACATATCAAA
GACAATACCTATAAAATTTTAGATGAAATTTTAAACCAAAATAAATAAGT
TTGTAAATATACAATTTGTGAATTTTTATATTTATTAGTATTTTTTATAG
AAAAAATTACGTAATGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015706-exon-sc0000215-1575043694:415685..416712 | TCONS_00015706-exon-sc0000215-1575043694:415685..416712 | Clytia hemisphaerica | exon |
| TCONS_00015706-exon-sc0000215-1575043694:414793..415613 | TCONS_00015706-exon-sc0000215-1575043694:414793..415613 | Clytia hemisphaerica | exon |
| TCONS_00015706-exon-sc0000215-1510915933:415685..416712 | TCONS_00015706-exon-sc0000215-1510915933:415685..416712 | Clytia hemisphaerica | exon |
| TCONS_00015706-exon-sc0000215-1510915933:414793..415613 | TCONS_00015706-exon-sc0000215-1510915933:414793..415613 | Clytia hemisphaerica | exon |
| TCONS_00015706-exon-sc0000215-1491911889:415685..416712 | TCONS_00015706-exon-sc0000215-1491911889:415685..416712 | Clytia hemisphaerica | exon |
| TCONS_00015706-exon-sc0000215-1491911889:414793..415613 | TCONS_00015706-exon-sc0000215-1491911889:414793..415613 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000215 | supercontig | sc0000215:414793..416712 - |
Blast
BLAST of TCONS_00015706 vs. Swiss-Prot (Human)
Match: RHOA (Transforming protein RhoA OS=Homo sapiens GN=RHOA PE=1 SV=1) HSP 1 Score: 211.846 bits (538), Expect = 6.538e-64 Identity = 101/173 (58.38%), Postives = 127/173 (73.41%), Query Frame = 1
Query: 388 KKVVVVGDGSCGKTCLLMSIIERDAPDGYVPTVFETYVKEIDHGKTSYEVSFYDTAGQDVYDRLRPLSYPDTDVFLVCFAVDSPDSLYNAYDKWTPEVKHFGPNVPFVLVGTKCDLRSDESTLKRLRKAKQEVITQEEGREMAKKLKASAYVECSALTGFNVNEVISTALKSA 906
KK+V+VGDG+CGKTCLL+ + P+ YVPTVFE YV +I+ E++ +DTAGQ+ YDRLRPLSYPDTDV L+CF++DSPDSL N +KWTPEVKHF PNVP +LVG K DLR+DE T + L K KQE + EEGR+MA ++ A Y+ECSA T V EV A ++A
Sbjct: 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 178
The following BLAST results are available for this feature:
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