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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015710 ID=TCONS_00015710|Name=TCONS_00015710|organism=Clytia hemisphaerica|type=transcript|length=2102bp
tggcgaacgacctataaatttaaatttggcggaaaaaaattttacgtGTA
TAAGTTTCGGTCAAAGTTTTATTTCCGTCAAATAGAATTTTTAAATCGTC
GTATCGGTCTTAAATACTGCAAGTTATTTCCTTATATATTAGTTTAAAAA
CTAAAATCATAGAAAACACTAACTAtatgtctgaaaatttaaagtgaATT
AATCTCAAAATGGAACTCCCTTGCTATGAGTTACTTAAATAAGGTGATAA
ACGATGATGTCGTCCGTTAGAGCTCAGTAAACGCGAGTATATGTGTAGCG
TTTACAACCTTCACGGTGGTTTACGGAAAAAAGTGGTGGCATCGTctaca
ctgtaaacacctccgccactgcttacgtAAGCTTACTCTTCCCCGGATTA
AACaccattttaaaatttatcccTAGTCTCTAaacaatttaaagattttg
tgtaGACAAAAGGATCGTCAAATTGGGTAACCATGCGTTTCGATCCAAAA
AGAATCCTCTTTATGGTAAAGATtatctaccttatcggccaaaacttagt
cggtcATAATTGACTAAATTTTGGAATGGTGATTAAAATTAGGACCGACT
AAagatttgggccaaattaaaagtttataataaagctttccttattttcc
atctgtttgtaaatttagaaatgacccaaatttttagtcggtcttaatta
ttaaccggcccttagtgactaaattttgacgaggtgactaagattaaggc
cgactaaaattaaggccgactaagttttggccgataaggtagataATCTT
TACCATAAAGAGGATTCTCTTTGGAGCGAAACGCATGGTTACCCAAATTG
ACGatctaagttttggccgataaggtatatctCACAGATAGCAAATTAAT
GTAAGATAGACATGTAGTATGATAAAGCAGACTTCACTTCGAAACACTAA
ACACTAGATTCCAAATATCATTAAAATCAACTAGATGATAAAGATATACA
TTGGTTCtgaaatttttcatcccaaaagTTAATTTTGAAATCTGTCCCAT
AATTCATCGATAATGTCTCTTTTCAATTCATCCAAAACTCTGAGCAGCTT
TTCATCTTCAGATCTGCCATCATTTTCATAGTAAACCTCGCGTTTCCCAG
GGCGTGGTCGACTCCACATTTCTTCTGATCGTCGATGCAGTAAGGAATCC
GGATGTTGAAGTTCCCGACGTCCCGGTCGTGGTCGAAATAATTCTCTTCT
ACCAGGGCGAGGGTTTCTTAAAAGGTGTTGGTAATCGAGGTCTGTGTCAC
TCGATCTTCTATGAAGCATTGAATCTGGATGCCTTTCTCGACGTCCAGGT
CTTGGCCTTATTTCTCGTCCTGGCCGAGGTCCACTCAAAAACTCTTGACC
TCTTTTATGTAGCATTGAATCTAGCCCTGGGTTTCTGAAAAGTTCCCTTC
GTCCTGGGCGTGGTCTATGCAGCAGTGCTCTTTTTTTTAGGATCGAATct
tggttcattagatcaaataATTCTCGTCTACCAGGGCGTGGTCTGTTTAA
AAGTTCTTGACTTTCTCGTCTATGTAGCATTGAGTCGAAGCCAGGGTTAA
GCCAGGTCTCACGTTTAACATGTAAAAGTTGGCCTTCTTCTTCAGGGCTT
GAAGATCCAACAGCAAAGCCAACGGcgataaaaaaacataaaattcgGAT
GGTAGTTTCGCTCGATAACATTTCAATTTTTGGGCTGCCCTTCAAGCCGC
GTGTGCCAAAAAGCGTTTGTATCTGGATTCTTTATTTTGCCAGAATTTCT
GTATTATATCAAGCTCCTTTGGCTCAAAAGACTTTCACACGTTTAAAGCT
ACGCTGGCTTTTCGTAGATGACTTGAGTTCGAAAATTCACTCACAGTTTC
ATAAATCTCAGTGCCATAGAATCGCTCCTTTTAAACTATTCCTTTAAAAG
TTCAGAATCCCACGACGAACAAAAGCTCTTGAAAAGGAGGGGAAATTTAC
CAAGAGGCTGCGAAAAAATTGTTATACTTCATTGATTGATTCCATCAATT
CTGAGTATTTACTGTTCTTATTATGCGGAGTTTGTTGAGAATTTCAATTT
AC Run BLAST on NCBI protein sequence of TCONS_00015710-protein >TCONS_00015710-protein ID=TCONS_00015710-protein|Name=TCONS_00015710-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
MLSSETTIRILCFFIAVGFAVGSSSPEEEGQLLHVKRETWLNPGFDSMLH
RRESQELLNRPRPGRRELFDLMNQDSILKKRALLHRPRPGRRELFRNPGL
DSMLHKRGQEFLSGPRPGREIRPRPGRRERHPDSMLHRRSSDTDLDYQHL
LRNPRPGRRELFRPRPGRRELQHPDSLLHRRSEEMWSRPRPGKREVYYEN
DGRSEDEKLLRVLDELKRDIIDELWDRFQN Run BLAST on NCBI transcript from alignment at sc0000215:46946..49047 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015710 ID=TCONS_00015710|Name=TCONS_00015710|organism=Clytia hemisphaerica|type=transcript|length=2102bp|location=Sequence derived from alignment at sc0000215:46946..49047 (Clytia hemisphaerica)
GTAAATTGAAATTCTCAACAAACTCCGCATAATAAGAACAGTAAATACTC
AGAATTGATGGAATCAATCAATGAAGTATAACAATTTTTTCGCAGCCTCT
TGGTAAATTTCCCCTCCTTTTCAAGAGCTTTTGTTCGTCGTGGGATTCTG
AACTTTTAAAGGAATAGTTTAAAAGGAGCGATTCTATGGCACTGAGATTT
ATGAAACTGTGAGTGAATTTTCGAACTCAAGTCATCTACGAAAAGCCAGC
GTAGCTTTAAACGTGTGAAAGTCTTTTGAGCCAAAGGAGCTTGATATAAT
ACAGAAATTCTGGCAAAATAAAGAATCCAGATACAAACGCTTTTTGGCAC
ACGCGGCTTGAAGGGCAGCCCAAAAATTGAAATGTTATCGAGCGAAACTA
CCATCcgaattttatgtttttttatcgCCGTTGGCTTTGCTGTTGGATCT
TCAAGCCCTGAAGAAGAAGGCCAACTTTTACATGTTAAACGTGAGACCTG
GCTTAACCCTGGCTTCGACTCAATGCTACATAGACGAGAAAGTCAAGAAC
TTTTAAACAGACCACGCCCTGGTAGACGAGAATtatttgatctaatgaac
caagATTCGATCCTAAAAAAAAGAGCACTGCTGCATAGACCACGCCCAGG
ACGAAGGGAACTTTTCAGAAACCCAGGGCTAGATTCAATGCTACATAAAA
GAGGTCAAGAGTTTTTGAGTGGACCTCGGCCAGGACGAGAAATAAGGCCA
AGACCTGGACGTCGAGAAAGGCATCCAGATTCAATGCTTCATAGAAGATC
GAGTGACACAGACCTCGATTACCAACACCTTTTAAGAAACCCTCGCCCTG
GTAGAAGAGAATTATTTCGACCACGACCGGGACGTCGGGAACTTCAACAT
CCGGATTCCTTACTGCATCGACGATCAGAAGAAATGTGGAGTCGACCACG
CCCTGGGAAACGCGAGGTTTACTATGAAAATGATGGCAGATCTGAAGATG
AAAAGCTGCTCAGAGTTTTGGATGAATTGAAAAGAGACATTATCGATGAA
TTATGGGACAGATTTCAAAATTAActtttgggatgaaaaatttcaGAACC
AATGTATATCTTTATCATCTAGTTGATTTTAATGATATTTGGAATCTAGT
GTTTAGTGTTTCGAAGTGAAGTCTGCTTTATCATACTACATGTCTATCTT
ACATTAATTTGCTATCTGTGagatataccttatcggccaaaacttagatC
GTCAATTTGGGTAACCATGCGTTTCGCTCCAAAGAGAATCCTCTTTATGG
TAAAGATtatctaccttatcggccaaaacttagtcggccttaattttagt
cggccttaatcttagtcacctcgtcaaaatttagtcactaagggccggtt
aataattaagaccgactaaaaatttgggtcatttctaaatttacaaacag
atggaaaataaggaaagctttattataaacttttaatttggcccaaatct
TTAGTCGGTCCTAATTTTAATCACCATTCCAAAATTTAGTCAATTATgac
cgactaagttttggccgataaggtagataATCTTTACCATAAAGAGGATT
CTTTTTGGATCGAAACGCATGGTTACCCAATTTGACGATCCTTTTGTCta
cacaaaatctttaaattgttTAGAGACTAgggataaattttaaaatggtG
TTTAATCCGGGGAAGAGTAAGCTTacgtaagcagtggcggaggtgtttac
agtgtagACGATGCCACCACTTTTTTCCGTAAACCACCGTGAAGGTTGTA
AACGCTACACATATACTCGCGTTTACTGAGCTCTAACGGACGACATCATC
GTTTATCACCTTATTTAAGTAACTCATAGCAAGGGAGTTCCATTTTGAGA
TTAATtcactttaaattttcagacataTAGTTAGTGTTTTCTATGATTTT
AGTTTTTAAACTAATATATAAGGAAATAACTTGCAGTATTTAAGACCGAT
ACGACGATTTAAAAATTCTATTTGACGGAAATAAAACTTTGACCGAAACT
TATACacgtaaaatttttttccgccaaatttaaatttataggtcgttcgc
ca Coding sequence (CDS) from alignment at sc0000215:46946..49047 >TCONS_00015710 ID=TCONS_00015710|Name=TCONS_00015710|organism=Clytia hemisphaerica|type=CDS|length=693bp|location=Sequence derived from alignment at sc0000215:46946..49047 (Clytia hemisphaerica)
ATGTTATCGAGCGAAACTACCATCcgaattttatgtttttttatcgCCGT
TGGCTTTGCTGTTGGATCTTCAAGCCCTGAAGAAGAAGGCCAACTTTTAC
ATGTTAAACGTGAGACCTGGCTTAACCCTGGCTTCGACTCAATGCTACAT
AGACGAGAAAGTCAAGAACTTTTAAACAGACCACGCCCTGGTAGACGAGA
ATtatttgatctaatgaaccaagATTCGATCCTAAAAAAAAGAGCACTGC
TGCATAGACCACGCCCAGGACGAAGGGAACTTTTCAGAAACCCAGGGCTA
GATTCAATGCTACATAAAAGAGGTCAAGAGTTTTTGAGTGGACCTCGGCC
AGGACGAGAAATAAGGCCAAGACCTGGACGTCGAGAAAGGCATCCAGATT
CAATGCTTCATAGAAGATCGAGTGACACAGACCTCGATTACCAACACCTT
TTAAGAAACCCTCGCCCTGGTAGAAGAGAATTATTTCGACCACGACCGGG
ACGTCGGGAACTTCAACATCCGGATTCCTTACTGCATCGACGATCAGAAG
AAATGTGGAGTCGACCACGCCCTGGGAAACGCGAGGTTTACTATGAAAAT
GATGGCAGATCTGAAGATGAAAAGCTGCTCAGAGTTTTGGATGAATTGAA
AAGAGACATTATCGATGAATTATGGGACAGATTTCAAAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015710-exon-sc0000215-1491911889:46946..49047 | TCONS_00015710-exon-sc0000215-1491911889:46946..49047 | Clytia hemisphaerica | exon |
| TCONS_00015710-exon-sc0000215-1510915933:46946..49047 | TCONS_00015710-exon-sc0000215-1510915933:46946..49047 | Clytia hemisphaerica | exon |
| TCONS_00015710-exon-sc0000215-1575043694:46946..49047 | TCONS_00015710-exon-sc0000215-1575043694:46946..49047 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000215 | supercontig | sc0000215:46946..49047 . |
Blast
The following BLAST results are available for this feature:
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