TCONS_00015714 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015714
Unique NameTCONS_00015714
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length853

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015714 ID=TCONS_00015714|Name=TCONS_00015714|organism=Clytia hemisphaerica|type=transcript|length=853bp
CCGGCGGCGGCGGCGAAGTTTGAGATCACACTTCAAAAACACAATAAATC
ACGGAGAATGCGAAGCTCCGCAGGGAAACTGCGGAAAATTGGCCGAAATC
TAtgccaaactcaaaaaatgtagtcctccaaaacaaaggaactgcTAGAT
ACAATCTGTCGTCATAATTACGGCGCATTCTATTATGCACGttttgaatg
ggaaataagtggcttcaatttctcttgcctgagaagggttaaagtttcac
ctctagccctttgggcttgaaactcaatggtcaggGCTTCCTTTCACTTT
ATTGATATTGCGCGAAGCGGCAGCGTGGTGCTAAACATTTTGGTTTCACT
TTCAATATCAAACAAAGGTCTTAACTTAGCAACAGGAAGCGCGTACATAA
ATGGGGcaggctgggtagaaaaatctaaacatagaattccaaaaaaatac
cgatcatccaTGTCGCTTGTTTTCATAATATTTAGATAATATTAAAAcct
ttttgtatatatttggTTCTTCAAAACCCCCAGTTTTGCGCGGTAATCTA
GAAAGGCCTTTAGTGCGGAATAAACAaataatttcagtggtttaaaattt
ggtaaaaagtTTAGTAAATTCAACCAcatatcaatgttttgatttttcaa
gcggggATTTCTGTACAATGATAAAATATGGCTTTGCTGGAATGGACACC
ATAACAGCAGTACCTGGGACTTCCCTTCACTTGCCAGATGATTTCttact
aacttttttgatactttttgaaggcttctttgttcgtctcaacaatcatc
caatttgagaAATCCGATGATGGACCATGACTTTGATGCTATTTGAATCA
GNN
Run BLAST on NCBI

transcript from alignment at sc0000215:106051..106903

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015714 ID=TCONS_00015714|Name=TCONS_00015714|organism=Clytia hemisphaerica|type=transcript|length=853bp|location=Sequence derived from alignment at sc0000215:106051..106903 (Clytia hemisphaerica)
NNCTGATTCAAATAGCATCAAAGTCATGGTCCATCATCGGATTtctcaaa
ttggatgattgttgagacgaacaaagaagccttcaaaaagtatcaaaaaa
gttagtaaGAAATCATCTGGCAAGTGAAGGGAAGTCCCAGGTACTGCTGT
TATGGTGTCCATTCCAGCAAAGCCATATTTTATCATTGTACAGAAATccc
cgcttgaaaaatcaaaacattgatatgTGGTTGAATTTACTAAacttttt
accaaattttaaaccactgaaattattTGTTTATTCCGCACTAAAGGCCT
TTCTAGATTACCGCGCAAAACTGGGGGTTTTGAAGAAccaaatatataca
aaaaggTTTTAATATTATCTAAATATTATGAAAACAAGCGACAtggatga
tcggtatttttttggaattctatgtttagatttttctacccagcctgCCC
CATTTATGTACGCGCTTCCTGTTGCTAAGTTAAGACCTTTGTTTGATATT
GAAAGTGAAACCAAAATGTTTAGCACCACGCTGCCGCTTCGCGCAATATC
AATAAAGTGAAAGGAAGCcctgaccattgagtttcaagcccaaagggcta
gaggtgaaactttaacccttctcaggcaagagaaattgaagccacttatt
tcccattcaaaaCGTGCATAATAGAATGCGCCGTAATTATGACGACAGAT
TGTATCTAgcagttcctttgttttggaggactacattttttgagtttggc
aTAGATTTCGGCCAATTTTCCGCAGTTTCCCTGCGGAGCTTCGCATTCTC
CGTGATTTATTGTGTTTTTGAAGTGTGATCTCAAACTTCGCCGCCGCCGC
CGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008768XLOC_008768Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015714-exon-sc0000215-1491911889:106051..106903TCONS_00015714-exon-sc0000215-1491911889:106051..106903Clytia hemisphaericaexon
TCONS_00015714-exon-sc0000215-1510915933:106051..106903TCONS_00015714-exon-sc0000215-1510915933:106051..106903Clytia hemisphaericaexon
TCONS_00015714-exon-sc0000215-1575043694:106051..106903TCONS_00015714-exon-sc0000215-1575043694:106051..106903Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:106051..106903 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.580396	0.260957	0.657124	0.797689	0.596463	0.483165	0.391297	1.12965	0.269116	0.543066	0.933992	0.310436	0.640543	0.66811	0.253283	0.365597	0.17684	0.315761	0.135467	0.466688	0.472349	0.383675	0.25516	0.263066	3.52494	1.78749	0.672883	0.298385	0.289391	0.305489
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015714 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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